Wall clock time and date at job start Mon Mar 30 2020 03:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 C 1.53003 * 109.47097 * 239.99921 * 2 1 3 5 5 O 1.45202 * 109.47454 * 120.00028 * 2 1 3 6 6 C 1.34227 * 117.00113 * 59.99669 * 5 2 1 7 7 O 1.20829 * 119.99881 * 0.02562 * 6 5 2 8 8 C 1.50697 * 120.00323 * 180.02562 * 6 5 2 9 9 C 1.53786 * 113.61519 * 80.86360 * 8 6 5 10 10 C 1.54049 * 86.98426 * 140.01979 * 9 8 6 11 11 N 1.46897 * 113.69699 * 220.01034 * 10 9 8 12 12 C 1.46907 * 111.00124 * 252.53706 * 11 10 9 13 13 C 1.53002 * 109.46995 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.46894 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00148 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99833 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00311 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99723 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47329 * 60.00210 * 18 16 14 20 20 H 1.48509 * 109.47052 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47552 * 300.00068 * 18 16 14 22 22 C 1.53781 * 113.61630 * 178.47308 * 8 6 5 23 23 H 1.09001 * 109.46913 * 299.99791 * 1 2 3 24 24 H 1.09000 * 109.47260 * 60.00241 * 1 2 3 25 25 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47344 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46798 * 300.00042 * 3 2 1 28 28 H 1.08999 * 109.47155 * 59.99502 * 3 2 1 29 29 H 1.09001 * 109.46916 * 299.99767 * 4 2 1 30 30 H 1.09000 * 109.46704 * 59.99988 * 4 2 1 31 31 H 1.08997 * 109.47113 * 179.97438 * 4 2 1 32 32 H 1.09002 * 112.84782 * 309.66950 * 8 6 5 33 33 H 1.08992 * 113.61675 * 254.61723 * 9 8 6 34 34 H 1.09000 * 113.60973 * 25.52011 * 9 8 6 35 35 H 1.09003 * 113.61268 * 89.11946 * 10 9 8 36 36 H 1.00899 * 111.00371 * 128.58116 * 11 10 9 37 37 H 1.08998 * 109.46816 * 299.99271 * 12 11 10 38 38 H 1.08997 * 109.46730 * 59.99761 * 12 11 10 39 39 H 1.09000 * 109.47180 * 299.99965 * 13 12 11 40 40 H 1.08996 * 109.47259 * 59.99837 * 13 12 11 41 41 H 0.96993 * 120.00372 * 179.97438 * 17 16 14 42 42 H 1.08999 * 113.61567 * 334.48200 * 22 8 6 43 43 H 1.08998 * 113.61196 * 105.38554 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6534 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5079 8 6 2.1174 -2.7434 2.5442 9 6 1.2802 -2.4779 3.8065 10 6 1.3966 -3.9853 4.1020 11 7 0.1593 -4.5821 4.6225 12 6 0.2859 -4.8933 6.0526 13 6 -1.0195 -5.5113 6.5576 14 6 -0.8893 -5.8311 8.0244 15 1 0.0324 -5.6156 8.5444 16 6 -1.9470 -6.3988 8.7027 17 7 -3.0692 -6.6617 8.0695 18 14 -1.7854 -6.7959 10.5208 19 1 -1.5023 -5.5494 11.2765 20 1 -3.0530 -7.3945 11.0113 21 1 -0.6730 -7.7591 10.7202 22 6 1.5890 -4.1868 2.5897 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7490 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 3.1922 -2.6665 2.7089 33 1 1.7834 -1.8476 4.5396 34 1 0.2619 -2.1519 3.5944 35 1 2.2742 -4.2479 4.6927 36 1 -0.0958 -5.4035 4.0949 37 1 1.1032 -5.5993 6.1997 38 1 0.4924 -3.9777 6.6067 39 1 -1.8366 -4.8050 6.4104 40 1 -1.2263 -6.4267 6.0034 41 1 -3.8132 -7.0614 8.5465 42 1 0.6550 -4.3273 2.0456 43 1 2.3415 -4.9353 2.3412 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001308687449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:43 Heat of formation + Delta-G solvation = -102.514317 kcal Electronic energy + Delta-G solvation = -20579.841431 eV Core-core repulsion = 17431.380919 eV Total energy + Delta-G solvation = -3148.460513 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.05115 -39.95400 -37.82409 -36.30676 -35.03862 -34.44485 -30.93627 -28.39149 -28.29959 -27.47739 -26.69956 -25.70516 -22.81782 -22.39456 -20.75997 -20.24091 -18.64793 -18.25340 -17.51764 -17.07094 -16.60862 -16.43144 -16.17614 -15.79848 -15.30107 -14.88414 -14.64027 -14.48835 -14.12077 -13.53001 -13.46513 -13.35098 -13.16428 -12.93860 -12.88407 -12.86207 -12.83725 -12.60862 -12.46561 -12.34823 -12.14807 -12.06409 -11.79588 -11.40785 -11.38529 -11.35519 -11.18180 -10.82832 -10.55549 -9.27337 -8.19513 -6.31354 1.19730 1.40943 1.44465 1.52329 1.71188 2.41359 3.13851 3.31683 3.46799 3.50320 3.72484 3.77853 3.81471 3.87463 3.96185 4.06139 4.48039 4.55443 4.57452 4.58983 4.66034 4.74919 4.76326 4.80959 4.82851 4.87221 4.90580 4.99548 5.07484 5.10145 5.11917 5.24602 5.28028 5.29922 5.47610 5.56971 5.69092 5.80889 6.16586 6.33729 6.54105 6.84381 6.86500 7.38077 8.92577 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042799 B = 0.002767 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.065309 B =10116.074842 C =10187.577132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.355 6.355 6 C 0.475 3.525 7 O -0.526 6.526 8 C -0.102 4.102 9 C -0.106 4.106 10 C 0.056 3.944 11 N -0.689 5.689 12 C 0.085 3.915 13 C 0.030 3.970 14 C -0.545 4.545 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.265 1.265 22 C -0.116 4.116 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.057 0.943 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.067 0.933 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.340 0.660 37 H 0.024 0.976 38 H 0.059 0.941 39 H -0.009 1.009 40 H -0.010 1.010 41 H 0.264 0.736 42 H 0.082 0.918 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.362 14.389 -17.045 26.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.068 3.932 3 C -0.193 4.193 4 C -0.235 4.235 5 O -0.272 6.272 6 C 0.319 3.681 7 O -0.415 6.415 8 C -0.121 4.121 9 C -0.145 4.145 10 C -0.054 4.054 11 N -0.320 5.320 12 C -0.044 4.044 13 C -0.008 4.008 14 C -0.583 4.583 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.792 3.208 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.190 1.190 22 C -0.154 4.154 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.076 0.924 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.086 0.914 32 H 0.170 0.830 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.159 0.841 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.009 0.991 40 H 0.008 0.992 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.676 14.805 -17.189 26.489 hybrid contribution -0.114 -1.207 0.679 1.390 sum 13.562 13.598 -16.510 25.326 Atomic orbital electron populations 1.22471 0.94491 1.03352 1.03606 1.22497 0.94309 0.93640 0.82787 1.21866 1.02509 0.90841 1.04062 1.22444 1.01925 1.01923 0.97248 1.86564 1.69596 1.25216 1.45839 1.23751 0.76681 0.80658 0.86966 1.90569 1.36229 1.70615 1.44092 1.22467 1.03612 0.95154 0.90848 1.23020 0.99433 0.97205 0.94797 1.23105 0.91888 0.95613 0.94755 1.60576 1.33057 1.34759 1.03654 1.21826 0.96982 0.98150 0.87452 1.18935 0.93163 0.94014 0.94654 1.21608 0.99785 1.40865 0.96054 0.91908 1.26011 0.94837 0.95439 1.03644 1.70105 1.04580 1.44178 1.38501 0.85459 0.77559 0.78874 0.78894 1.19086 1.20945 1.18985 1.23145 1.02356 0.94653 0.95212 0.92190 0.89110 0.92398 0.90903 0.88374 0.91507 0.92214 0.89230 0.91385 0.83033 0.89079 0.91010 0.89259 0.84104 0.95764 0.92243 0.99057 0.99172 0.92766 0.89903 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.55 8.37 71.98 0.60 -2.95 16 2 C 0.10 1.88 1.13 -10.79 -0.01 1.87 16 3 C -0.14 -1.64 8.85 71.98 0.64 -1.01 16 4 C -0.18 -3.02 8.37 71.98 0.60 -2.42 16 5 O -0.35 -7.88 9.89 -51.39 -0.51 -8.39 16 6 C 0.48 11.57 6.79 71.24 0.48 12.05 16 7 O -0.53 -15.28 11.41 21.96 0.25 -15.03 16 8 C -0.10 -2.09 4.25 -11.01 -0.05 -2.13 16 9 C -0.11 -2.57 7.45 31.21 0.23 -2.34 16 10 C 0.06 1.49 4.14 45.53 0.19 1.68 16 11 N -0.69 -24.40 6.56 -488.37 -3.21 -27.60 16 12 C 0.08 3.54 5.47 86.30 0.47 4.01 16 13 C 0.03 1.61 5.23 29.85 0.16 1.77 16 14 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.09 5.46 84.66 0.46 0.38 16 17 N -0.93 -57.87 13.29 21.45 0.28 -57.58 16 18 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.12 -2.66 6.97 31.12 0.22 -2.44 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.46 5.89 -2.39 -0.01 1.45 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.33 5.89 -2.39 -0.01 1.32 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.15 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 2.07 8.09 -2.39 -0.02 2.05 16 35 H 0.09 2.14 7.87 -2.39 -0.02 2.12 16 36 H 0.34 11.90 8.55 -89.69 -0.77 11.14 16 37 H 0.02 0.97 8.13 -2.39 -0.02 0.95 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.08 2.28 7.46 -2.39 -0.02 2.26 16 43 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -68.68 347.38 3.28 -65.40 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 0.21 Total: 19.34 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 4.23 Total: -22.62 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -2.92 Total: -85.18 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.26 Total: -23.42 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.68 3.28 -65.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001308687449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.112 kcal (2) G-P(sol) polarization free energy of solvation -68.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds