Wall clock time and date at job start Mon Mar 30 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53004 * 109.47392 * 2 1 4 4 N 1.46498 * 109.47226 * 179.97438 * 3 2 1 5 5 C 1.37090 * 120.00407 * 269.99899 * 4 3 2 6 6 H 1.08000 * 120.00180 * 141.76713 * 5 4 3 7 7 C 1.38948 * 120.00176 * 321.77554 * 5 4 3 8 8 N 1.31416 * 120.00081 * 340.94126 * 7 5 4 9 9 Si 1.86803 * 120.00104 * 160.94127 * 7 5 4 10 10 H 1.48493 * 109.47161 * 60.00121 * 9 7 5 11 11 H 1.48504 * 109.46762 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47083 * 299.99770 * 9 7 5 13 13 C 1.34780 * 119.99533 * 90.00605 * 4 3 2 14 14 O 1.21289 * 120.00097 * 354.74653 * 13 4 3 15 15 C 1.50700 * 119.99612 * 174.74487 * 13 4 3 16 16 C 1.53001 * 109.46890 * 173.95302 * 15 13 4 17 17 H 1.09004 * 109.47063 * 55.00176 * 16 15 13 18 18 C 1.52992 * 109.47494 * 295.00221 * 16 15 13 19 19 C 1.53001 * 109.47494 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47116 * 59.99686 * 19 18 16 21 21 C 1.52997 * 109.46986 * 300.00213 * 20 19 18 22 22 C 1.52998 * 109.47116 * 174.99907 * 16 15 13 23 23 H 1.08994 * 109.46903 * 60.00109 * 22 16 15 24 24 O 1.42905 * 109.47239 * 300.00020 * 22 16 15 25 25 H 1.09000 * 109.47365 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47084 * 299.99626 * 1 2 3 27 27 H 1.08998 * 109.47176 * 59.99977 * 1 2 3 28 28 H 1.08999 * 109.47348 * 239.99897 * 2 1 3 29 29 H 1.09007 * 109.47298 * 120.00238 * 2 1 3 30 30 H 1.08993 * 109.47214 * 300.00575 * 3 2 1 31 31 H 1.09008 * 109.46668 * 60.00200 * 3 2 1 32 32 H 0.96996 * 120.00209 * 185.02462 * 8 7 5 33 33 H 1.08996 * 109.47212 * 293.95007 * 15 13 4 34 34 H 1.08996 * 109.47396 * 53.95736 * 15 13 4 35 35 H 1.09004 * 109.46929 * 300.00037 * 18 16 15 36 36 H 1.09006 * 109.47244 * 59.99601 * 18 16 15 37 37 H 1.09004 * 109.47272 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.47063 * 299.99955 * 19 18 16 39 39 H 1.09004 * 109.46935 * 60.00191 * 20 19 18 40 40 H 1.08994 * 109.46887 * 179.97438 * 20 19 18 41 41 H 1.09010 * 109.46729 * 179.97438 * 21 20 19 42 42 H 1.08994 * 109.47215 * 299.99705 * 21 20 19 43 43 H 0.96695 * 113.99784 * 179.97438 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1900 1.4427 1.1881 6 1 5.0962 0.8638 1.2889 7 6 3.7184 2.1874 2.2622 8 7 2.8630 3.1642 2.0593 9 14 4.3002 1.8001 3.9945 10 1 5.7748 1.9582 4.0684 11 1 3.6542 2.7320 4.9535 12 1 3.9342 0.4027 4.3387 13 6 4.1793 1.4424 -1.1664 14 8 3.5770 1.3462 -2.2148 15 6 5.6815 1.5619 -1.1685 16 6 6.2051 1.3853 -2.5953 17 1 5.7113 2.0993 -3.2545 18 6 5.9116 -0.0380 -3.0738 19 6 6.4346 -0.2144 -4.5007 20 6 7.9447 0.0304 -4.5244 21 6 8.2381 1.4536 -4.0459 22 6 7.7152 1.6298 -2.6183 23 1 8.2089 0.9159 -1.9591 24 8 7.9894 2.9592 -2.1714 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 2.5897 3.7307 2.7977 33 1 5.9683 2.5450 -0.7954 34 1 6.1083 0.7910 -0.5269 35 1 6.4053 -0.7520 -2.4145 36 1 4.8356 -0.2122 -3.0574 37 1 6.2250 -1.2283 -4.8418 38 1 5.9405 0.4996 -5.1597 39 1 8.4388 -0.6837 -3.8654 40 1 8.3173 -0.0958 -5.5408 41 1 9.3141 1.6278 -4.0623 42 1 7.7441 2.1676 -4.7048 43 1 8.9298 3.1841 -2.1598 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330678800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:07 Heat of formation + Delta-G solvation = -119.037268 kcal Electronic energy + Delta-G solvation = -21970.169073 eV Core-core repulsion = 18820.992071 eV Total energy + Delta-G solvation = -3149.177001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.34686 -38.01388 -35.38905 -34.92507 -32.82559 -31.92050 -31.13782 -29.41141 -26.89672 -25.44626 -24.10132 -22.37835 -21.35541 -20.42377 -19.50692 -18.91426 -16.99316 -16.63353 -15.90513 -15.07016 -14.52690 -14.49946 -14.32038 -13.95746 -13.85521 -13.51299 -13.46435 -12.69440 -12.62672 -12.32479 -12.13961 -11.77310 -11.49458 -11.39713 -11.23220 -11.02857 -10.98744 -10.89785 -10.66869 -10.61181 -10.35951 -10.27651 -10.21166 -9.88567 -9.82120 -9.66518 -9.49165 -8.99633 -8.23688 -7.37310 -6.30685 -4.01642 3.14656 3.22361 3.24129 4.02305 4.16592 4.44074 4.73685 4.89799 5.00024 5.06256 5.20784 5.42198 5.45162 5.59700 5.70846 5.74736 5.77166 5.84965 5.89765 5.95944 6.10719 6.20445 6.21969 6.26416 6.33299 6.41360 6.50509 6.54813 6.57889 6.65183 6.75677 6.86299 6.89148 6.96738 7.00173 7.21570 7.42951 7.58771 7.91041 8.05594 8.45473 9.15188 9.63236 10.06603 10.71100 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018073 B = 0.006088 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.898420 B = 4597.954910 C = 5659.128232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.114 3.886 4 N -0.441 5.441 5 C -0.337 4.337 6 H 0.087 0.913 7 C 0.045 3.955 8 N -0.863 5.863 9 Si 0.914 3.086 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.472 3.528 14 O -0.607 6.607 15 C -0.110 4.110 16 C -0.060 4.060 17 H 0.079 0.921 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.149 4.149 22 C 0.108 3.892 23 H 0.051 0.949 24 O -0.561 6.561 25 H 0.043 0.957 26 H 0.050 0.950 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.270 0.730 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.643 -4.790 -6.169 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C -0.010 4.010 4 N -0.159 5.159 5 C -0.465 4.465 6 H 0.104 0.896 7 C -0.161 4.161 8 N -0.500 5.500 9 Si 0.740 3.260 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.262 3.738 14 O -0.494 6.494 15 C -0.149 4.149 16 C -0.079 4.079 17 H 0.098 0.902 18 C -0.152 4.152 19 C -0.157 4.157 20 C -0.153 4.153 21 C -0.187 4.187 22 C 0.050 3.950 23 H 0.069 0.931 24 O -0.365 6.365 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.510 -4.705 -6.468 10.313 hybrid contribution 0.999 -0.108 1.021 1.432 sum 7.509 -4.813 -5.447 10.452 Atomic orbital electron populations 1.21658 0.96786 1.00298 1.01317 1.21817 0.94491 0.99664 1.01146 1.21424 0.81913 0.94409 1.03236 1.43448 1.04569 1.63288 1.04554 1.19343 1.10240 1.28706 0.88236 0.89588 1.25393 0.96471 0.94068 1.00178 1.69820 1.32345 1.15071 1.32750 0.86211 0.79051 0.78521 0.82172 1.19766 1.20921 1.19844 1.20508 0.89661 0.79944 0.83695 1.90472 1.70754 1.56317 1.31871 1.21327 0.94051 1.03819 0.95739 1.20854 0.91683 0.97729 0.97628 0.90232 1.21640 1.03248 0.95419 0.94859 1.21555 0.94883 1.01128 0.98105 1.21486 0.97068 0.96195 1.00578 1.22266 1.00292 0.97954 0.98198 1.21921 0.96874 0.83534 0.92721 0.93110 1.86628 1.29231 1.31501 1.89138 0.93758 0.93050 0.93216 0.93061 0.92442 0.93140 0.87823 0.91961 0.88982 0.90942 0.92925 0.89268 0.92348 0.91937 0.92163 0.92310 0.92348 0.91244 0.78550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 37.15 0.37 -2.13 16 2 C -0.13 -2.81 6.26 -26.73 -0.17 -2.98 16 3 C 0.11 2.80 4.96 -4.04 -0.02 2.78 16 4 N -0.44 -11.36 2.52 -114.81 -0.29 -11.65 16 5 C -0.34 -8.69 8.58 -14.94 -0.13 -8.82 16 6 H 0.09 2.13 6.95 -52.49 -0.36 1.76 16 7 C 0.04 1.14 5.01 -17.47 -0.09 1.06 16 8 N -0.86 -23.18 11.36 55.50 0.63 -22.55 16 9 Si 0.91 19.67 29.60 -169.99 -5.03 14.64 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 C 0.47 11.73 7.23 -10.98 -0.08 11.65 16 14 O -0.61 -15.92 13.84 5.55 0.08 -15.85 16 15 C -0.11 -2.32 4.02 -27.88 -0.11 -2.43 16 16 C -0.06 -1.08 1.57 -90.62 -0.14 -1.22 16 17 H 0.08 1.62 7.87 -51.93 -0.41 1.21 16 18 C -0.11 -1.89 4.95 -26.73 -0.13 -2.02 16 19 C -0.12 -1.61 5.92 -26.73 -0.16 -1.76 16 20 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 21 C -0.15 -1.80 5.55 -26.70 -0.15 -1.95 16 22 C 0.11 1.58 2.91 -26.70 -0.08 1.50 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 O -0.56 -8.48 12.56 -35.23 -0.44 -8.92 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.29 7.50 -51.93 -0.39 0.90 16 31 H 0.10 2.70 5.47 -51.92 -0.28 2.42 16 32 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 33 H 0.09 2.09 7.54 -51.93 -0.39 1.69 16 34 H 0.07 1.46 7.25 -51.93 -0.38 1.09 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.75 6.17 -51.93 -0.32 1.42 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.37 3.70 9.08 45.56 0.41 4.12 16 LS Contribution 335.98 15.07 5.06 5.06 Total: -1.00 -29.55 335.98 -7.79 -37.34 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.75 Total: 9.71 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -1.04 Total: -7.80 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.34 Total: -34.19 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.37 Total: -24.77 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.03 Total: 14.64 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.55 -7.79 -37.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330678800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.699 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds