Wall clock time and date at job start Mon Mar 30 2020 00:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 H 1.08998 * 110.33726 * 52.74140 * 3 2 1 5 5 C 1.54478 * 110.37355 * 174.99823 * 3 2 1 6 6 C 1.54517 * 104.06538 * 142.80669 * 5 3 2 7 7 C 1.54485 * 104.06032 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.37476 * 94.96480 * 7 6 5 9 9 C 1.50694 * 110.37100 * 217.19074 * 7 6 5 10 10 O 1.21283 * 120.00367 * 114.99444 * 9 7 6 11 11 N 1.34784 * 119.99992 * 295.00362 * 9 7 6 12 12 C 1.46499 * 119.99897 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47073 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46989 * 59.99821 * 13 12 11 15 15 C 1.53000 * 109.47124 * 300.00146 * 13 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 O 1.44428 * 104.80284 * 336.01880 * 7 6 5 25 25 H 1.09002 * 109.47600 * 300.00839 * 1 2 3 26 26 H 1.09007 * 109.46486 * 60.00259 * 1 2 3 27 27 H 1.08994 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47290 * 239.99436 * 2 1 3 29 29 H 1.09003 * 109.46884 * 119.99427 * 2 1 3 30 30 H 1.09000 * 110.51190 * 24.16408 * 5 3 2 31 31 H 1.09004 * 110.62504 * 261.50882 * 5 3 2 32 32 H 1.08993 * 110.50980 * 241.35675 * 6 5 3 33 33 H 1.08993 * 110.62597 * 118.69871 * 6 5 3 34 34 H 0.96991 * 119.99637 * 359.97438 * 11 9 7 35 35 H 1.09002 * 109.47239 * 59.99631 * 12 11 9 36 36 H 1.08998 * 109.47134 * 299.99061 * 12 11 9 37 37 H 1.08997 * 109.47359 * 180.02562 * 14 13 12 38 38 H 1.09007 * 109.47356 * 300.00069 * 14 13 12 39 39 H 1.09000 * 109.47156 * 59.99794 * 14 13 12 40 40 H 1.09002 * 109.47106 * 299.99750 * 15 13 12 41 41 H 1.08998 * 109.47089 * 59.99697 * 15 13 12 42 42 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5830 2.0059 0.8134 5 6 3.5794 1.4686 0.1263 6 6 4.0108 2.6419 -0.7819 7 6 2.6809 3.1863 -1.3489 8 1 2.3236 4.0199 -0.7444 9 6 2.8589 3.6171 -2.7819 10 8 2.2698 3.0349 -3.6679 11 7 3.6729 4.6495 -3.0791 12 6 3.8455 5.0687 -4.4722 13 6 4.8129 6.2525 -4.5324 14 6 6.1664 5.8349 -3.9540 15 6 4.2466 7.4160 -3.7161 16 6 4.9910 6.6833 -5.9654 17 1 4.4663 6.1650 -6.7544 18 6 5.8238 7.7393 -6.2695 19 7 6.4624 8.3709 -5.3087 20 14 6.0450 8.2729 -8.0459 21 1 6.9839 9.4220 -8.1043 22 1 6.5948 7.1431 -8.8373 23 1 4.7317 8.6783 -8.6082 24 8 1.7628 2.0742 -1.2686 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.0079 0.5320 -0.2306 31 1 3.8769 1.6549 1.1582 32 1 4.6524 2.2853 -1.5876 33 1 4.5206 3.4101 -0.2005 34 1 4.1438 5.1152 -2.3706 35 1 2.8813 5.3666 -4.8841 36 1 4.2487 4.2397 -5.0538 37 1 6.8556 6.6783 -3.9965 38 1 6.0380 5.5229 -2.9175 39 1 6.5699 5.0059 -4.5355 40 1 3.2823 7.7135 -4.1281 41 1 4.1182 7.1040 -2.6796 42 1 4.9360 8.2591 -3.7586 43 1 7.0486 9.1135 -5.5227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:21 Heat of formation + Delta-G solvation = -103.782461 kcal Electronic energy + Delta-G solvation = -21342.576797 eV Core-core repulsion = 18194.061293 eV Total energy + Delta-G solvation = -3148.515503 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.18877 -38.47547 -36.28728 -33.74911 -33.35786 -32.15915 -30.86935 -28.76071 -25.74346 -25.71953 -25.12686 -23.77187 -21.97113 -21.13268 -20.04811 -18.81448 -17.18410 -16.65869 -16.15075 -15.82710 -15.06544 -14.77398 -14.39813 -14.18096 -13.81937 -13.71173 -13.29271 -13.15321 -12.93313 -12.71276 -12.20595 -11.91929 -11.84604 -11.61562 -11.37086 -11.20203 -11.10768 -10.91766 -10.83857 -10.78173 -10.73465 -10.39531 -10.21026 -9.95222 -9.64704 -9.47073 -9.15622 -8.80284 -8.46130 -8.31876 -6.03010 -4.13064 2.99675 3.26181 3.30050 3.34148 3.38873 4.08301 4.37749 4.39862 4.56210 4.75151 4.90110 4.93675 5.05083 5.13419 5.23795 5.26949 5.40498 5.49166 5.60543 5.65193 5.76283 5.83464 5.90092 5.99098 6.16632 6.21473 6.32154 6.49074 6.72560 6.76926 6.80458 6.93256 7.00565 7.02066 7.34198 7.54275 7.68464 7.99707 8.03274 8.14542 8.37648 8.69683 8.87579 9.52785 10.98407 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044863 B = 0.003627 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.973501 B = 7718.033275 C = 7996.982808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.069 3.931 4 H 0.070 0.930 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.057 3.943 8 H 0.091 0.909 9 C 0.509 3.491 10 O -0.532 6.532 11 N -0.714 5.714 12 C 0.133 3.867 13 C 0.057 3.943 14 C -0.131 4.131 15 C -0.131 4.131 16 C -0.507 4.507 17 H 0.057 0.943 18 C 0.067 3.933 19 N -0.887 5.887 20 Si 0.894 3.106 21 H -0.288 1.288 22 H -0.277 1.277 23 H -0.277 1.277 24 O -0.338 6.338 25 H 0.051 0.949 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.397 0.603 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.006 0.994 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.006 0.994 42 H 0.086 0.914 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.567 -10.646 14.142 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.011 3.989 4 H 0.087 0.913 5 C -0.187 4.187 6 C -0.183 4.183 7 C -0.004 4.004 8 H 0.109 0.891 9 C 0.293 3.707 10 O -0.409 6.409 11 N -0.366 5.366 12 C 0.011 3.989 13 C 0.056 3.944 14 C -0.188 4.188 15 C -0.189 4.189 16 C -0.546 4.546 17 H 0.075 0.925 18 C -0.135 4.135 19 N -0.525 5.525 20 Si 0.722 3.278 21 H -0.213 1.213 22 H -0.203 1.203 23 H -0.203 1.203 24 O -0.257 6.257 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.233 0.767 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.104 0.896 38 H 0.025 0.975 39 H 0.046 0.954 40 H 0.046 0.954 41 H 0.025 0.975 42 H 0.104 0.896 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.025 -10.973 13.338 17.988 hybrid contribution 0.549 0.678 -0.440 0.977 sum -4.476 -10.295 12.898 17.099 Atomic orbital electron populations 1.21743 0.95247 1.01527 1.02397 1.21572 0.96819 0.94310 1.02687 1.23114 0.94138 0.94610 0.87025 0.91261 1.22990 0.95913 0.99383 1.00364 1.22908 0.96905 0.98502 1.00028 1.22863 0.90597 0.91724 0.95248 0.89146 1.20102 0.80038 0.80830 0.89731 1.90692 1.47001 1.54538 1.48649 1.46218 1.46186 1.32830 1.11395 1.21739 1.00132 0.98153 0.78918 1.18348 0.90514 0.89413 0.96126 1.21831 1.00746 1.01254 0.94993 1.21834 1.00269 1.02080 0.94693 1.20959 1.26888 1.15407 0.91335 0.92458 1.24876 0.95330 0.96054 0.97201 1.69792 1.29350 1.22089 1.31278 0.86625 0.78006 0.78085 0.85104 1.21327 1.20264 1.20261 1.89284 1.56822 1.42717 1.36839 0.92955 0.91754 0.92799 0.90891 0.90780 0.90344 0.90294 0.89948 0.89573 0.76748 0.92654 0.92672 0.89577 0.97524 0.95433 0.95399 0.97520 0.89569 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.85 37.16 0.37 -1.04 16 2 C -0.12 -1.08 5.56 -26.73 -0.15 -1.23 16 3 C 0.07 0.73 3.25 -25.96 -0.08 0.65 16 4 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 5 C -0.15 -1.36 6.63 -25.16 -0.17 -1.53 16 6 C -0.15 -1.59 6.61 -25.16 -0.17 -1.76 16 7 C 0.06 0.79 3.71 -27.11 -0.10 0.69 16 8 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 9 C 0.51 9.27 7.08 -10.98 -0.08 9.19 16 10 O -0.53 -12.08 16.55 -13.66 -0.23 -12.30 16 11 N -0.71 -12.74 4.94 -60.29 -0.30 -13.04 16 12 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 13 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 14 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 15 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 16 C -0.51 -13.29 8.01 -34.44 -0.28 -13.57 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 19 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 20 Si 0.89 20.72 29.54 -169.99 -5.02 15.69 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 O -0.34 -5.11 10.39 -54.45 -0.57 -5.68 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.73 8.01 -51.93 -0.42 0.31 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.70 7.87 -51.93 -0.41 0.29 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.01 7.87 -51.93 -0.41 0.61 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.40 6.24 6.16 -40.82 -0.25 5.99 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 42 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 43 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 338.63 15.07 5.10 5.10 Total: -1.00 -29.84 338.63 -8.17 -38.01 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.44 Total: 3.30 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -0.24 Total: -8.12 kcal Atomic # 7 Polarization: -36.23 SS G_CDS: 0.22 Total: -36.01 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.79 Total: -17.98 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.84 -8.17 -38.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.768 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds