Wall clock time and date at job start Mon Mar 30 2020 00:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47254 * 2 1 4 4 H 1.08998 * 110.33726 * 52.74140 * 3 2 1 5 5 C 1.54478 * 110.37355 * 174.99823 * 3 2 1 6 6 C 1.54517 * 104.06538 * 142.80669 * 5 3 2 7 7 C 1.54485 * 104.06032 * 0.02562 * 6 5 3 8 8 H 1.08998 * 110.37476 * 94.96480 * 7 6 5 9 9 C 1.50694 * 110.37100 * 217.19074 * 7 6 5 10 10 O 1.21283 * 120.00367 * 114.99444 * 9 7 6 11 11 N 1.34784 * 119.99992 * 295.00362 * 9 7 6 12 12 C 1.46499 * 119.99897 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47073 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46989 * 59.99821 * 13 12 11 15 15 C 1.53000 * 109.47124 * 300.00146 * 13 12 11 16 16 C 1.50694 * 109.47168 * 179.97438 * 13 12 11 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 O 1.44428 * 104.80284 * 336.01880 * 7 6 5 25 25 H 1.09002 * 109.47600 * 300.00839 * 1 2 3 26 26 H 1.09007 * 109.46486 * 60.00259 * 1 2 3 27 27 H 1.08994 * 109.47156 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47290 * 239.99436 * 2 1 3 29 29 H 1.09003 * 109.46884 * 119.99427 * 2 1 3 30 30 H 1.09000 * 110.51190 * 24.16408 * 5 3 2 31 31 H 1.09004 * 110.62504 * 261.50882 * 5 3 2 32 32 H 1.08993 * 110.50980 * 241.35675 * 6 5 3 33 33 H 1.08993 * 110.62597 * 118.69871 * 6 5 3 34 34 H 0.96991 * 119.99637 * 359.97438 * 11 9 7 35 35 H 1.09002 * 109.47239 * 59.99631 * 12 11 9 36 36 H 1.08998 * 109.47134 * 299.99061 * 12 11 9 37 37 H 1.08997 * 109.47359 * 180.02562 * 14 13 12 38 38 H 1.09007 * 109.47356 * 300.00069 * 14 13 12 39 39 H 1.09000 * 109.47156 * 59.99794 * 14 13 12 40 40 H 1.09002 * 109.47106 * 299.99750 * 15 13 12 41 41 H 1.08998 * 109.47089 * 59.99697 * 15 13 12 42 42 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5830 2.0059 0.8134 5 6 3.5794 1.4686 0.1263 6 6 4.0108 2.6419 -0.7819 7 6 2.6809 3.1863 -1.3489 8 1 2.3236 4.0199 -0.7444 9 6 2.8589 3.6171 -2.7819 10 8 2.2698 3.0349 -3.6679 11 7 3.6729 4.6495 -3.0791 12 6 3.8455 5.0687 -4.4722 13 6 4.8129 6.2525 -4.5324 14 6 6.1664 5.8349 -3.9540 15 6 4.2466 7.4160 -3.7161 16 6 4.9910 6.6833 -5.9654 17 1 4.4663 6.1650 -6.7544 18 6 5.8238 7.7393 -6.2695 19 7 6.4624 8.3709 -5.3087 20 14 6.0450 8.2729 -8.0459 21 1 6.9839 9.4220 -8.1043 22 1 6.5948 7.1431 -8.8373 23 1 4.7317 8.6783 -8.6082 24 8 1.7628 2.0742 -1.2686 25 1 -0.3634 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 4.0079 0.5320 -0.2306 31 1 3.8769 1.6549 1.1582 32 1 4.6524 2.2853 -1.5876 33 1 4.5206 3.4101 -0.2005 34 1 4.1438 5.1152 -2.3706 35 1 2.8813 5.3666 -4.8841 36 1 4.2487 4.2397 -5.0538 37 1 6.8556 6.6783 -3.9965 38 1 6.0380 5.5229 -2.9175 39 1 6.5699 5.0059 -4.5355 40 1 3.2823 7.7135 -4.1281 41 1 4.1182 7.1040 -2.6796 42 1 4.9360 8.2591 -3.7586 43 1 7.0486 9.1135 -5.5227 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:20 Heat of formation + Delta-G solvation = -121.444759 kcal Electronic energy + Delta-G solvation = -21343.342691 eV Core-core repulsion = 18194.061293 eV Total energy + Delta-G solvation = -3149.281398 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36899 -39.78174 -38.04739 -35.09139 -34.54463 -33.25908 -32.53875 -29.79806 -27.55859 -27.45418 -26.78123 -24.94562 -22.82739 -21.94174 -21.44856 -20.62659 -18.57515 -17.72952 -17.57643 -17.23576 -16.60514 -16.46784 -15.79570 -15.49723 -14.82384 -14.75771 -14.51111 -14.44454 -14.33505 -13.99261 -13.97057 -13.21631 -13.10980 -12.86788 -12.68041 -12.66082 -12.63392 -12.36722 -12.24739 -12.13571 -11.87798 -11.70389 -11.50202 -11.48821 -11.28001 -10.95528 -10.73788 -10.56291 -10.40064 -9.99548 -8.03038 -6.18704 1.43696 1.44884 1.51451 1.58406 2.00579 2.46294 3.07115 3.20547 3.50629 3.65194 3.91739 3.95741 4.17763 4.20357 4.34578 4.38912 4.44111 4.48832 4.60484 4.70943 4.77023 4.91322 4.95016 4.97987 5.04184 5.05819 5.08381 5.10904 5.16626 5.19379 5.24002 5.34396 5.43374 5.55845 5.66802 5.67670 5.87652 6.15782 6.21163 6.43209 6.63146 6.84920 7.26893 7.48927 8.95655 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044863 B = 0.003627 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.973501 B = 7718.033275 C = 7996.982808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.061 3.939 4 H 0.089 0.911 5 C -0.142 4.142 6 C -0.143 4.143 7 C 0.061 3.939 8 H 0.120 0.880 9 C 0.505 3.495 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.148 3.852 13 C 0.053 3.947 14 C -0.120 4.120 15 C -0.122 4.122 16 C -0.533 4.533 17 H 0.042 0.958 18 C 0.031 3.969 19 N -0.898 5.898 20 Si 0.944 3.056 21 H -0.281 1.281 22 H -0.278 1.278 23 H -0.278 1.278 24 O -0.377 6.377 25 H 0.065 0.935 26 H 0.034 0.966 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.411 0.589 35 H 0.036 0.964 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.017 0.983 40 H 0.016 0.984 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 -10.929 16.741 20.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.004 3.996 4 H 0.107 0.893 5 C -0.179 4.179 6 C -0.181 4.181 7 C 0.000 4.000 8 H 0.138 0.862 9 C 0.292 3.708 10 O -0.465 6.465 11 N -0.355 5.355 12 C 0.024 3.976 13 C 0.052 3.948 14 C -0.178 4.178 15 C -0.179 4.179 16 C -0.572 4.572 17 H 0.061 0.939 18 C -0.170 4.170 19 N -0.536 5.536 20 Si 0.771 3.229 21 H -0.206 1.206 22 H -0.203 1.203 23 H -0.204 1.204 24 O -0.296 6.296 25 H 0.084 0.916 26 H 0.053 0.947 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.249 0.751 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.036 0.964 40 H 0.036 0.964 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.573 -11.247 15.975 20.065 hybrid contribution 0.375 0.727 -1.243 1.488 sum -4.198 -10.520 14.732 18.583 Atomic orbital electron populations 1.21735 0.95489 1.02037 1.01588 1.21629 0.96648 0.93927 1.03194 1.23431 0.95475 0.95027 0.85705 0.89337 1.23008 0.94584 0.98560 1.01751 1.22967 0.95059 1.00014 1.00051 1.22944 0.92490 0.92725 0.91858 0.86234 1.21010 0.78540 0.79712 0.91533 1.90665 1.48952 1.56120 1.50798 1.45989 1.46357 1.33006 1.10161 1.21295 0.98537 0.96912 0.80847 1.18342 0.91416 0.90135 0.94869 1.21672 0.99383 0.99906 0.96866 1.21682 0.98894 1.00867 0.96494 1.21263 1.27203 1.15865 0.92861 0.93939 1.25423 0.95212 0.96134 1.00183 1.69889 1.29338 1.22082 1.32293 0.85840 0.77795 0.77721 0.81591 1.20642 1.20320 1.20366 1.89267 1.57505 1.43421 1.39434 0.91582 0.94655 0.91707 0.92731 0.87818 0.90465 0.87033 0.91830 0.86485 0.75083 0.94574 0.94521 0.91771 0.94062 0.96424 0.96444 0.94122 0.91737 0.92943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.85 71.98 0.71 -1.89 16 2 C -0.12 -1.94 5.56 30.59 0.17 -1.77 16 3 C 0.06 1.12 3.25 31.10 0.10 1.22 16 4 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 5 C -0.14 -2.09 6.63 31.61 0.21 -1.88 16 6 C -0.14 -2.69 6.61 31.61 0.21 -2.48 16 7 C 0.06 1.56 3.71 30.35 0.11 1.67 16 8 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 9 C 0.51 18.18 7.08 87.65 0.62 18.80 16 10 O -0.59 -27.30 16.55 15.34 0.25 -27.05 16 11 N -0.70 -24.33 4.94 -463.06 -2.29 -26.62 16 12 C 0.15 6.42 4.50 86.38 0.39 6.80 16 13 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 14 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 15 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 16 C -0.53 -28.41 8.01 25.60 0.21 -28.20 16 17 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 18 C 0.03 1.61 5.15 84.66 0.44 2.04 16 19 N -0.90 -47.47 9.35 21.45 0.20 -47.27 16 20 Si 0.94 42.68 29.54 68.60 2.03 44.70 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 O -0.38 -11.02 10.39 -130.60 -1.36 -12.38 16 25 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.03 0.80 8.01 -2.38 -0.02 0.78 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.08 1.17 7.87 -2.39 -0.02 1.15 16 31 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.06 1.44 7.87 -2.39 -0.02 1.43 16 33 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.41 11.80 6.16 -92.71 -0.57 11.23 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 38 H 0.04 1.46 6.86 -2.38 -0.02 1.44 16 39 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 42 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 43 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 Total: -1.00 -66.69 338.63 3.54 -63.15 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.40 Total: 18.13 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 4.30 Total: -12.66 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -2.09 Total: -73.89 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.10 Total: -39.43 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.69 3.54 -63.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.293 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds