Wall clock time and date at job start Mon Mar 30 2020 01:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 C 1.34783 * 119.99576 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99786 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.47321 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47276 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47276 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47321 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00013 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00189 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99788 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00284 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46922 * 89.99974 * 16 14 12 18 18 H 1.48498 * 109.47192 * 209.99816 * 16 14 12 19 19 H 1.48496 * 109.46987 * 330.00138 * 16 14 12 20 20 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 21 21 C 1.53001 * 117.51964 * 231.28841 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 25 25 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 26 26 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 29 29 H 0.96993 * 120.00197 * 359.97438 * 5 4 2 30 30 H 1.09010 * 109.47170 * 300.00207 * 8 6 5 31 31 H 1.09003 * 109.47636 * 59.99875 * 8 6 5 32 32 H 1.08997 * 109.46396 * 299.99902 * 9 8 6 33 33 H 1.08994 * 109.46918 * 59.99453 * 9 8 6 34 34 H 1.08998 * 109.47587 * 299.99861 * 10 9 8 35 35 H 1.09003 * 109.47618 * 59.99672 * 10 9 8 36 36 H 1.09000 * 109.46804 * 299.99631 * 11 10 9 37 37 H 1.08994 * 109.46918 * 59.99502 * 11 10 9 38 38 H 0.96993 * 120.00070 * 180.02562 * 15 14 12 39 39 H 1.09002 * 115.54973 * 85.58625 * 20 2 1 40 40 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 41 41 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 42 42 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 43 43 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 6 1.8779 -0.4908 -3.6695 7 8 2.5752 -1.4769 -3.7807 8 6 1.3761 0.2199 -4.8999 9 6 1.8860 -0.5014 -6.1492 10 6 1.3761 0.2197 -7.3984 11 6 1.8866 -0.5012 -8.6477 12 6 1.3848 0.2095 -9.8781 13 1 0.7635 1.0874 -9.7791 14 6 1.7188 -0.2609 -11.1304 15 7 2.4758 -1.3296 -11.2510 16 14 1.0962 0.6196 -12.6557 17 1 2.0738 1.6621 -13.0590 18 1 0.9325 -0.3594 -13.7602 19 1 -0.2125 1.2560 -12.3602 20 6 2.0400 -0.7212 1.2493 21 6 3.0757 0.0040 2.1109 22 6 1.6373 -0.1482 2.6097 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.9702 1.4238 0.0004 27 1 3.1301 -0.7208 -1.2493 28 1 1.6767 -1.7489 -1.2492 29 1 0.9938 0.7577 -2.3564 30 1 0.2860 0.2199 -4.9004 31 1 1.7394 1.2476 -4.8996 32 1 2.9760 -0.5018 -6.1489 33 1 1.5224 -1.5289 -6.1493 34 1 0.2861 0.2197 -7.3985 35 1 1.7393 1.2474 -7.3985 36 1 2.9766 -0.5007 -8.6474 37 1 1.5237 -1.5290 -8.6478 38 1 2.7111 -1.6604 -12.1319 39 1 2.1253 -1.8046 1.1648 40 1 3.8425 -0.6023 2.5932 41 1 3.3942 0.9949 1.7876 42 1 1.0093 0.7428 2.6145 43 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588620590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:07 Heat of formation + Delta-G solvation = -94.436831 kcal Electronic energy + Delta-G solvation = -20095.955627 eV Core-core repulsion = 16947.845381 eV Total energy + Delta-G solvation = -3148.110246 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26703 -39.11221 -35.81513 -34.91244 -34.39205 -32.60412 -31.44370 -29.70350 -27.27961 -25.46012 -23.49358 -22.74612 -21.98703 -20.66883 -20.02055 -19.90499 -17.55268 -17.18879 -16.27692 -16.05358 -15.87957 -15.33910 -15.04381 -14.55188 -14.41285 -13.96000 -13.61667 -13.14315 -12.92200 -12.79546 -12.57364 -12.40089 -11.98404 -11.85169 -11.65364 -11.57019 -11.46296 -11.00702 -10.95861 -10.60365 -10.50829 -10.48056 -10.37623 -10.36602 -9.76988 -9.58030 -9.18869 -9.14841 -8.95302 -8.28192 -5.93004 -3.95381 2.76519 3.05306 3.28123 3.35623 3.41507 3.44893 3.78685 4.11454 4.26993 4.40673 4.50896 4.58792 4.74136 4.84812 4.96271 5.19235 5.28317 5.31938 5.37782 5.39738 5.42022 5.43856 5.48526 5.55484 5.65704 5.70832 5.79519 5.91169 6.17909 6.31962 6.35168 6.58710 6.87829 7.05771 7.15811 7.23421 7.48179 7.76794 7.93098 8.08718 8.30345 8.50566 9.12390 9.68062 11.18350 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.059777 B = 0.002394 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.294893 B =11690.925025 C =11876.307783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.151 3.849 3 O -0.554 6.554 4 C 0.098 3.902 5 N -0.732 5.732 6 C 0.511 3.489 7 O -0.538 6.538 8 C -0.138 4.138 9 C -0.103 4.103 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.054 3.946 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.186 4.186 21 C -0.177 4.177 22 C -0.165 4.165 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.074 0.926 26 H 0.378 0.622 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.403 0.597 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.572 3.958 28.984 29.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.110 3.890 3 O -0.361 6.361 4 C -0.026 4.026 5 N -0.387 5.387 6 C 0.299 3.701 7 O -0.414 6.414 8 C -0.178 4.178 9 C -0.141 4.141 10 C -0.148 4.148 11 C -0.018 4.018 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.147 4.147 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.205 4.205 21 C -0.214 4.214 22 C -0.202 4.202 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.227 0.773 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.238 0.762 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.131 0.869 40 H 0.114 0.886 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.621 3.243 28.763 29.064 hybrid contribution 0.106 0.572 -0.773 0.968 sum -2.516 3.815 27.990 28.361 Atomic orbital electron populations 1.21735 0.91740 1.02870 1.03053 1.20896 0.95186 0.81785 0.91097 1.86558 1.27167 1.25633 1.96758 1.21899 0.99622 0.96860 0.84265 1.46013 1.54855 1.32576 1.05222 1.21121 0.79796 0.84577 0.84653 1.90703 1.37499 1.26353 1.86841 1.21789 1.02377 1.00804 0.92864 1.21444 1.01176 0.99440 0.92030 1.21649 0.99479 0.98902 0.94769 1.19099 0.96460 0.95614 0.90593 1.21289 1.31211 1.12131 0.91143 0.92755 1.25051 0.95333 0.95109 0.99157 1.69976 1.37039 1.23114 1.23369 0.86604 0.79197 0.79385 0.82857 1.20720 1.21276 1.19928 1.22970 1.05324 1.00002 0.92165 1.22989 0.92745 1.02176 1.03472 1.22897 0.98033 1.03181 0.96119 0.91456 0.91639 0.90759 0.77286 0.91324 0.90726 0.76173 0.89179 0.89141 0.91849 0.91846 0.93480 0.93483 0.96601 0.96593 0.93066 0.86915 0.88644 0.88189 0.88320 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.51 37.16 0.32 -0.59 16 2 C 0.15 1.05 0.86 -90.62 -0.08 0.97 16 3 O -0.55 -3.99 11.88 -35.23 -0.42 -4.41 16 4 C 0.10 0.90 4.77 -4.04 -0.02 0.88 16 5 N -0.73 -7.54 5.15 -60.29 -0.31 -7.85 16 6 C 0.51 7.26 7.83 -10.98 -0.09 7.17 16 7 O -0.54 -9.95 15.98 5.56 0.09 -9.86 16 8 C -0.14 -1.89 5.70 -27.88 -0.16 -2.05 16 9 C -0.10 -1.88 4.50 -26.73 -0.12 -2.01 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.45 16 11 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 12 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.78 13.29 55.43 0.74 -27.05 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 20 C -0.19 -1.13 5.15 -90.61 -0.47 -1.60 16 21 C -0.18 -0.96 9.74 -26.73 -0.26 -1.22 16 22 C -0.17 -0.93 9.67 -26.73 -0.26 -1.19 16 23 H 0.07 0.43 7.29 -51.93 -0.38 0.05 16 24 H 0.06 0.44 6.86 -51.93 -0.36 0.09 16 25 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.38 1.94 7.56 45.56 0.34 2.28 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.40 3.38 7.19 -40.82 -0.29 3.08 16 30 H 0.09 1.07 8.14 -51.92 -0.42 0.64 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 33 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 34 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.11 0.67 8.11 -51.93 -0.42 0.25 16 40 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 0.49 6.38 -51.93 -0.33 0.16 16 42 H 0.10 0.60 7.61 -51.93 -0.40 0.20 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 351.40 15.07 5.30 5.30 Total: -1.00 -34.26 351.40 -8.31 -42.57 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -6.86 Total: -0.12 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.82 Total: -15.66 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.43 Total: -34.90 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.33 Total: -14.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.26 -8.31 -42.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588620590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.867 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds