Wall clock time and date at job start Mon Mar 30 2020 01:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42908 * 109.46807 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99766 * 2 1 3 5 5 N 1.46505 * 109.46707 * 60.00045 * 4 2 1 6 6 C 1.34783 * 119.99576 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00025 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99786 * 180.02562 * 6 5 4 9 9 C 1.53004 * 109.47321 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47276 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.47276 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47321 * 180.02562 * 11 10 9 13 13 H 1.08005 * 120.00013 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00189 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99788 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00284 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46922 * 89.99974 * 16 14 12 18 18 H 1.48498 * 109.47192 * 209.99816 * 16 14 12 19 19 H 1.48496 * 109.46987 * 330.00138 * 16 14 12 20 20 C 1.53003 * 109.47107 * 119.99644 * 2 1 3 21 21 C 1.53001 * 117.51964 * 231.28841 * 20 2 1 22 22 C 1.52999 * 60.00190 * 107.47982 * 21 20 2 23 23 H 1.08996 * 109.47501 * 299.99752 * 1 2 3 24 24 H 1.09004 * 109.47169 * 60.00511 * 1 2 3 25 25 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 26 26 H 0.96700 * 113.99867 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 28 28 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 29 29 H 0.96993 * 120.00197 * 359.97438 * 5 4 2 30 30 H 1.09010 * 109.47170 * 300.00207 * 8 6 5 31 31 H 1.09003 * 109.47636 * 59.99875 * 8 6 5 32 32 H 1.08997 * 109.46396 * 299.99902 * 9 8 6 33 33 H 1.08994 * 109.46918 * 59.99453 * 9 8 6 34 34 H 1.08998 * 109.47587 * 299.99861 * 10 9 8 35 35 H 1.09003 * 109.47618 * 59.99672 * 10 9 8 36 36 H 1.09000 * 109.46804 * 299.99631 * 11 10 9 37 37 H 1.08994 * 109.46918 * 59.99502 * 11 10 9 38 38 H 0.96993 * 120.00070 * 180.02562 * 15 14 12 39 39 H 1.09002 * 115.54973 * 85.58625 * 20 2 1 40 40 H 1.09001 * 117.49733 * 214.97413 * 21 20 2 41 41 H 1.08995 * 117.49577 * 359.97438 * 21 20 2 42 42 H 1.09004 * 117.50150 * 252.51496 * 22 21 20 43 43 H 1.09004 * 117.51638 * 107.47550 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 1.5517 -0.0306 -2.4454 6 6 1.8779 -0.4908 -3.6695 7 8 2.5752 -1.4769 -3.7807 8 6 1.3761 0.2199 -4.8999 9 6 1.8860 -0.5014 -6.1492 10 6 1.3761 0.2197 -7.3984 11 6 1.8866 -0.5012 -8.6477 12 6 1.3848 0.2095 -9.8781 13 1 0.7635 1.0874 -9.7791 14 6 1.7188 -0.2609 -11.1304 15 7 2.4758 -1.3296 -11.2510 16 14 1.0962 0.6196 -12.6557 17 1 2.0738 1.6621 -13.0590 18 1 0.9325 -0.3594 -13.7602 19 1 -0.2125 1.2560 -12.3602 20 6 2.0400 -0.7212 1.2493 21 6 3.0757 0.0040 2.1109 22 6 1.6373 -0.1482 2.6097 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 2.9702 1.4238 0.0004 27 1 3.1301 -0.7208 -1.2493 28 1 1.6767 -1.7489 -1.2492 29 1 0.9938 0.7577 -2.3564 30 1 0.2860 0.2199 -4.9004 31 1 1.7394 1.2476 -4.8996 32 1 2.9760 -0.5018 -6.1489 33 1 1.5224 -1.5289 -6.1493 34 1 0.2861 0.2197 -7.3985 35 1 1.7393 1.2474 -7.3985 36 1 2.9766 -0.5007 -8.6474 37 1 1.5237 -1.5290 -8.6478 38 1 2.7111 -1.6604 -12.1319 39 1 2.1253 -1.8046 1.1648 40 1 3.8425 -0.6023 2.5932 41 1 3.3942 0.9949 1.7876 42 1 1.0093 0.7428 2.6145 43 1 1.4574 -0.8547 3.4200 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588620590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:06 Heat of formation + Delta-G solvation = -118.225907 kcal Electronic energy + Delta-G solvation = -20096.987199 eV Core-core repulsion = 16947.845381 eV Total energy + Delta-G solvation = -3149.141818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09841 -39.96948 -36.72992 -36.32048 -35.25872 -34.60166 -32.28288 -31.27799 -28.31600 -27.00451 -24.60716 -23.36895 -23.14796 -21.77259 -21.45177 -20.75231 -18.43645 -18.28234 -17.94311 -17.04251 -16.91611 -16.52624 -16.21583 -15.93151 -15.35323 -14.98814 -14.69078 -14.52034 -13.97433 -13.69496 -13.56859 -13.41938 -13.30609 -13.24546 -12.89408 -12.79652 -12.33959 -12.28642 -12.15215 -12.12457 -11.99153 -11.46767 -11.37415 -11.35786 -11.19197 -11.10152 -10.96562 -10.65766 -10.54696 -10.11611 -8.18376 -6.30541 1.40524 1.42963 1.54067 1.65319 2.16023 2.42383 2.81524 3.14150 3.24905 3.54649 3.71880 3.87856 3.91492 4.06698 4.10280 4.15580 4.22880 4.36505 4.58729 4.67447 4.70151 4.76012 4.79438 4.85179 4.86438 4.89116 4.92677 5.05684 5.19871 5.21790 5.27661 5.28517 5.33733 5.35802 5.45104 5.57825 5.78587 5.88493 6.25754 6.53819 6.70354 6.87898 7.27147 7.38942 8.93898 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.059777 B = 0.002394 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.294893 B =11690.925025 C =11876.307783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.163 3.837 3 O -0.561 6.561 4 C 0.097 3.903 5 N -0.712 5.712 6 C 0.510 3.490 7 O -0.590 6.590 8 C -0.129 4.129 9 C -0.095 4.095 10 C -0.096 4.096 11 C 0.018 3.982 12 C -0.541 4.541 13 H 0.066 0.934 14 C -0.008 4.008 15 N -0.938 5.938 16 Si 0.971 3.029 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.259 1.259 20 C -0.193 4.193 21 C -0.176 4.176 22 C -0.163 4.163 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.387 0.613 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.416 0.584 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.060 0.940 36 H -0.016 1.016 37 H -0.015 1.015 38 H 0.263 0.737 39 H 0.112 0.888 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.960 6.039 29.888 30.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.122 3.878 3 O -0.369 6.369 4 C -0.027 4.027 5 N -0.365 5.365 6 C 0.298 3.702 7 O -0.470 6.470 8 C -0.168 4.168 9 C -0.134 4.134 10 C -0.133 4.133 11 C -0.019 4.019 12 C -0.579 4.579 13 H 0.084 0.916 14 C -0.205 4.205 15 N -0.578 5.578 16 Si 0.795 3.205 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.183 1.183 20 C -0.212 4.212 21 C -0.213 4.213 22 C -0.200 4.200 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.096 0.904 26 H 0.237 0.763 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.254 0.746 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.071 0.929 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.032 5.369 29.715 30.464 hybrid contribution 0.571 -0.102 -1.003 1.158 sum -3.461 5.266 28.712 29.396 Atomic orbital electron populations 1.21774 0.91356 1.03223 1.03287 1.20757 0.95358 0.81549 0.90174 1.86542 1.28145 1.25537 1.96688 1.21999 0.99241 0.96815 0.84679 1.45829 1.53784 1.32445 1.04471 1.21186 0.79218 0.83909 0.85840 1.90693 1.40042 1.28678 1.87580 1.21671 1.03917 1.01128 0.90116 1.21238 0.99871 0.98763 0.93497 1.21450 1.00102 0.98877 0.92905 1.19063 0.94511 0.94723 0.93609 1.21755 1.31409 1.12622 0.92117 0.91574 1.26113 0.95372 0.95875 1.03178 1.70134 1.38376 1.24902 1.24433 0.85367 0.79185 0.78105 0.77892 1.19696 1.20937 1.18315 1.22927 1.06203 0.99983 0.92061 1.23077 0.92807 1.02408 1.02987 1.22930 0.98089 1.03123 0.95825 0.90991 0.91629 0.90414 0.76263 0.92079 0.91494 0.74618 0.86410 0.86498 0.93899 0.93852 0.92061 0.92093 0.99726 0.99693 0.92857 0.86981 0.88150 0.87660 0.88574 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.51 71.98 0.61 -0.97 16 2 C 0.16 2.00 0.86 -10.79 -0.01 1.99 16 3 O -0.56 -6.94 11.88 -148.98 -1.77 -8.71 16 4 C 0.10 1.69 4.77 86.38 0.41 2.10 16 5 N -0.71 -13.49 5.15 -463.06 -2.38 -15.88 16 6 C 0.51 14.02 7.83 87.65 0.69 14.70 16 7 O -0.59 -22.20 15.98 -3.03 -0.05 -22.25 16 8 C -0.13 -3.26 5.70 29.85 0.17 -3.09 16 9 C -0.10 -3.51 4.50 30.59 0.14 -3.38 16 10 C -0.10 -3.97 5.15 30.59 0.16 -3.82 16 11 C 0.02 1.01 4.97 29.85 0.15 1.15 16 12 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16 13 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 14 C -0.01 -0.49 5.46 84.65 0.46 -0.03 16 15 N -0.94 -59.50 13.29 21.45 0.28 -59.22 16 16 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 C -0.19 -2.09 5.15 -10.79 -0.06 -2.15 16 21 C -0.18 -1.63 9.74 30.59 0.30 -1.33 16 22 C -0.16 -1.56 9.67 30.60 0.30 -1.27 16 23 H 0.07 0.77 7.29 -2.39 -0.02 0.75 16 24 H 0.06 0.74 6.86 -2.39 -0.02 0.72 16 25 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 26 H 0.39 3.24 7.56 -74.06 -0.56 2.68 16 27 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.42 5.85 7.19 -92.71 -0.67 5.19 16 30 H 0.12 2.38 8.14 -2.38 -0.02 2.36 16 31 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 33 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 34 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 37 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 38 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 39 H 0.11 1.24 8.11 -2.39 -0.02 1.22 16 40 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.85 6.38 -2.39 -0.02 0.84 16 42 H 0.10 0.99 7.61 -2.39 -0.02 0.97 16 43 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -75.60 351.40 1.42 -74.18 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -0.24 Total: 12.25 kcal Atomic # 6 Polarization: -31.09 SS G_CDS: 3.55 Total: -27.54 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -2.10 Total: -75.10 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.82 Total: -30.96 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -75.60 1.42 -74.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588620590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.045 kcal (2) G-P(sol) polarization free energy of solvation -75.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds