Wall clock time and date at job start Mon Mar 30 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46889 * 2 1 4 4 H 1.09005 * 109.46507 * 180.52557 * 3 2 1 5 5 C 1.50694 * 109.47107 * 300.52423 * 3 2 1 6 6 H 1.07999 * 119.99919 * 119.99962 * 5 3 2 7 7 C 1.37876 * 120.00449 * 299.72932 * 5 3 2 8 8 N 1.31517 * 119.99583 * 0.27362 * 7 5 3 9 9 Si 1.86798 * 120.00385 * 180.27363 * 7 5 3 10 10 H 1.48502 * 109.47126 * 59.99760 * 9 7 5 11 11 H 1.48504 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47157 * 299.99872 * 9 7 5 13 13 N 1.46892 * 109.47196 * 60.52919 * 3 2 1 14 14 C 1.48534 * 111.00339 * 59.78767 * 13 3 2 15 15 C 1.54944 * 103.22881 * 159.72176 * 14 13 3 16 16 C 1.54595 * 102.91930 * 322.58457 * 15 14 13 17 17 H 1.08995 * 110.39476 * 263.00173 * 16 15 14 18 18 C 1.52996 * 110.30770 * 140.87297 * 16 15 14 19 19 C 1.53004 * 109.47230 * 69.28405 * 18 16 15 20 20 C 1.50693 * 109.47290 * 180.02562 * 19 18 16 21 21 O 1.20828 * 120.00217 * 359.97438 * 20 19 18 22 22 O 1.34227 * 120.00022 * 180.02562 * 20 19 18 23 23 C 1.45204 * 117.00297 * 179.97438 * 22 20 19 24 24 C 1.47904 * 111.00347 * 177.18503 * 13 3 2 25 25 H 1.08997 * 109.47042 * 185.40995 * 1 2 3 26 26 H 1.09000 * 109.47724 * 305.41613 * 1 2 3 27 27 H 1.09006 * 109.47039 * 65.41726 * 1 2 3 28 28 H 1.09001 * 109.47366 * 239.99495 * 2 1 3 29 29 H 1.09008 * 109.47070 * 119.99474 * 2 1 3 30 30 H 0.97002 * 119.99625 * 180.02562 * 8 7 5 31 31 H 1.09004 * 110.66628 * 278.15653 * 14 13 3 32 32 H 1.08994 * 110.66580 * 41.28624 * 14 13 3 33 33 H 1.08998 * 110.72083 * 204.22664 * 15 14 13 34 34 H 1.08993 * 110.87361 * 81.01294 * 15 14 13 35 35 H 1.08999 * 109.47169 * 189.28427 * 18 16 15 36 36 H 1.08999 * 109.47246 * 309.28479 * 18 16 15 37 37 H 1.08999 * 109.47063 * 300.00088 * 19 18 16 38 38 H 1.08999 * 109.46945 * 59.99890 * 19 18 16 39 39 H 1.09001 * 109.46606 * 59.99631 * 23 22 20 40 40 H 1.08998 * 109.47019 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.47235 * 300.00175 * 23 22 20 42 42 H 1.09005 * 109.90800 * 333.50880 * 24 13 3 43 43 H 1.08998 * 109.91881 * 94.59665 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 -0.0094 5 6 1.5270 2.1567 -1.2239 6 1 0.9070 3.0344 -1.1167 7 6 1.8538 1.6928 -2.4804 8 7 2.6089 0.6239 -2.6109 9 14 1.2243 2.5825 -3.9975 10 1 1.7199 3.9823 -3.9917 11 1 1.7137 1.8896 -5.2165 12 1 -0.2607 2.5831 -3.9904 13 7 1.5608 2.1313 1.2057 14 6 2.0435 1.4511 2.4347 15 6 1.9156 2.5486 3.5209 16 6 2.3173 3.8343 2.7623 17 1 3.3662 4.0695 2.9424 18 6 1.4301 5.0041 3.1927 19 6 1.7599 5.3901 4.6361 20 6 0.8856 6.5419 5.0603 21 8 0.0815 7.0067 4.2874 22 8 1.0008 7.0521 6.2964 23 6 0.1270 8.1610 6.6360 24 6 2.0901 3.5107 1.2740 25 1 -0.3633 -1.0231 0.0969 26 1 -0.3634 0.5955 0.8375 27 1 -0.3633 0.4275 -0.9346 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.8391 0.2977 -3.4950 31 1 1.4111 0.5964 2.6751 32 1 3.0825 1.1422 2.3205 33 1 2.6020 2.3570 4.3456 34 1 0.8899 2.6190 3.8830 35 1 1.6104 5.8569 2.5383 36 1 0.3828 4.7096 3.1257 37 1 1.5796 4.5374 5.2905 38 1 2.8072 5.6846 4.7031 39 1 -0.9124 7.8454 6.5451 40 1 0.3222 8.4767 7.6609 41 1 0.3149 8.9928 5.9572 42 1 3.0338 3.5734 0.7320 43 1 1.3691 4.2068 0.8454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:48 Heat of formation + Delta-G solvation = -98.553214 kcal Electronic energy + Delta-G solvation = -21208.459054 eV Core-core repulsion = 18060.170308 eV Total energy + Delta-G solvation = -3148.288746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.58398 -38.64425 -36.72364 -35.11998 -32.94448 -31.19308 -29.40955 -28.81327 -27.43751 -25.89495 -24.04608 -22.86203 -21.32851 -20.66461 -19.53808 -18.87031 -17.63740 -16.77112 -16.59863 -16.02873 -15.29450 -15.02074 -14.57604 -14.12511 -13.75833 -13.33817 -13.13097 -12.85706 -12.73080 -12.43783 -12.24630 -11.96515 -11.80072 -11.60370 -11.18983 -11.10359 -10.98923 -10.87080 -10.68417 -10.59333 -10.50346 -10.35444 -10.20651 -10.14343 -9.84668 -9.60916 -9.31153 -8.79158 -8.36576 -7.17379 -5.96238 -3.99296 2.10470 2.58084 3.35252 3.39365 3.43013 4.45272 4.61956 4.81281 4.87250 4.89485 4.95575 5.07438 5.16195 5.27473 5.31496 5.35211 5.47755 5.60763 5.83263 5.90018 5.93373 6.20619 6.25354 6.26100 6.37471 6.43569 6.48651 6.58212 6.66328 6.74154 6.77428 6.84847 7.17077 7.31332 7.44759 7.63042 7.66978 7.76619 7.88920 8.17887 8.38778 8.61760 9.06260 9.64689 11.10388 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.003992 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.323467 B = 7011.481499 C = 7677.310047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.109 4.109 3 C 0.209 3.791 4 H -0.002 1.002 5 C -0.495 4.495 6 H 0.060 0.940 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.508 5.508 14 C 0.035 3.965 15 C -0.120 4.120 16 C -0.101 4.101 17 H 0.069 0.931 18 C -0.096 4.096 19 C -0.112 4.112 20 C 0.458 3.542 21 O -0.505 6.505 22 O -0.365 6.365 23 C 0.035 3.965 24 C 0.057 3.943 25 H 0.014 0.986 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.012 0.988 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.032 0.968 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.041 0.959 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.561 8.428 16.814 18.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.148 4.148 3 C 0.103 3.897 4 H 0.015 0.985 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.232 5.232 14 C -0.094 4.094 15 C -0.158 4.158 16 C -0.120 4.120 17 H 0.087 0.913 18 C -0.134 4.134 19 C -0.150 4.150 20 C 0.301 3.699 21 O -0.392 6.392 22 O -0.282 6.282 23 C -0.059 4.059 24 C -0.071 4.071 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.307 8.472 16.391 18.498 hybrid contribution 0.489 0.577 -0.896 1.172 sum -0.819 9.049 15.496 17.963 Atomic orbital electron populations 1.21458 0.97299 0.97167 1.01857 1.21528 0.95225 0.98130 0.99888 1.19445 0.92769 0.91143 0.86386 0.98487 1.21011 1.30812 1.11864 0.89645 0.92195 1.24897 0.95272 0.95124 0.98859 1.69876 1.37294 1.23109 1.23109 0.86646 0.79312 0.79709 0.82261 1.20413 1.21462 1.20235 1.64843 1.55323 1.00852 1.02225 1.23121 0.97937 0.96853 0.91452 1.22602 1.01079 0.94829 0.97255 1.22100 0.98555 0.94382 0.96954 0.91279 1.21524 1.01186 0.98425 0.92237 1.21528 0.99403 0.94337 0.99713 1.24086 0.82597 0.83858 0.79372 1.90690 1.35778 1.59776 1.52910 1.86518 1.59914 1.47987 1.33752 1.23234 0.93813 0.87385 1.01475 1.22639 0.98967 0.92931 0.92582 0.96735 0.93500 0.92696 0.89234 0.96947 0.93040 0.91064 0.94974 0.92176 0.91193 0.91095 0.90469 0.87629 0.87832 0.91942 0.88280 0.91975 0.94022 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.71 9.47 37.16 0.35 -2.35 16 2 C -0.11 -2.63 5.22 -26.73 -0.14 -2.77 16 3 C 0.21 5.20 1.44 -68.87 -0.10 5.10 16 4 H 0.00 -0.07 7.99 -51.93 -0.41 -0.48 16 5 C -0.49 -13.39 6.94 -34.44 -0.24 -13.63 16 6 H 0.06 1.65 7.42 -52.49 -0.39 1.26 16 7 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 8 N -0.89 -25.42 11.33 55.43 0.63 -24.79 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.51 -10.69 4.26 -223.88 -0.95 -11.64 16 14 C 0.03 0.61 5.40 -1.89 -0.01 0.60 16 15 C -0.12 -1.65 5.87 -24.87 -0.15 -1.79 16 16 C -0.10 -1.43 3.00 -89.27 -0.27 -1.69 16 17 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 18 C -0.10 -1.24 3.66 -26.73 -0.10 -1.33 16 19 C -0.11 -1.13 5.68 -27.88 -0.16 -1.29 16 20 C 0.46 5.50 7.96 36.00 0.29 5.78 16 21 O -0.50 -7.68 15.73 -18.75 -0.29 -7.98 16 22 O -0.36 -3.84 10.57 -39.25 -0.41 -4.25 16 23 C 0.03 0.27 10.56 101.05 1.07 1.34 16 24 C 0.06 1.09 5.46 -2.75 -0.02 1.07 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.05 1.02 7.46 -51.93 -0.39 0.63 16 27 H 0.05 1.34 7.40 -51.93 -0.38 0.95 16 28 H 0.09 2.40 6.10 -51.93 -0.32 2.09 16 29 H 0.01 0.27 6.90 -51.92 -0.36 -0.09 16 30 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 31 H 0.07 1.24 7.65 -51.93 -0.40 0.85 16 32 H 0.03 0.59 8.00 -51.93 -0.42 0.17 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.94 7.76 -51.93 -0.40 0.54 16 35 H 0.07 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.08 1.12 7.95 -51.93 -0.41 0.70 16 37 H 0.11 0.91 7.58 -51.93 -0.39 0.52 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.50 8.13 -51.93 -0.42 0.07 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.04 0.86 7.69 -51.93 -0.40 0.46 16 43 H 0.07 1.41 7.54 -51.93 -0.39 1.02 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -30.30 339.55 -8.08 -38.38 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.58 Total: -1.89 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 0.44 Total: -9.43 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: -0.33 Total: -36.43 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: -0.71 Total: -12.23 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.30 -8.08 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.173 kcal (2) G-P(sol) polarization free energy of solvation -30.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds