Wall clock time and date at job start Mon Mar 30 2020 01:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46889 * 2 1 4 4 H 1.09005 * 109.46507 * 180.52557 * 3 2 1 5 5 C 1.50694 * 109.47107 * 300.52423 * 3 2 1 6 6 H 1.07999 * 119.99919 * 119.99962 * 5 3 2 7 7 C 1.37876 * 120.00449 * 299.72932 * 5 3 2 8 8 N 1.31517 * 119.99583 * 0.27362 * 7 5 3 9 9 Si 1.86798 * 120.00385 * 180.27363 * 7 5 3 10 10 H 1.48502 * 109.47126 * 59.99760 * 9 7 5 11 11 H 1.48504 * 109.47290 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47157 * 299.99872 * 9 7 5 13 13 N 1.46892 * 109.47196 * 60.52919 * 3 2 1 14 14 C 1.48534 * 111.00339 * 59.78767 * 13 3 2 15 15 C 1.54944 * 103.22881 * 159.72176 * 14 13 3 16 16 C 1.54595 * 102.91930 * 322.58457 * 15 14 13 17 17 H 1.08995 * 110.39476 * 263.00173 * 16 15 14 18 18 C 1.52996 * 110.30770 * 140.87297 * 16 15 14 19 19 C 1.53004 * 109.47230 * 69.28405 * 18 16 15 20 20 C 1.50693 * 109.47290 * 180.02562 * 19 18 16 21 21 O 1.20828 * 120.00217 * 359.97438 * 20 19 18 22 22 O 1.34227 * 120.00022 * 180.02562 * 20 19 18 23 23 C 1.45204 * 117.00297 * 179.97438 * 22 20 19 24 24 C 1.47904 * 111.00347 * 177.18503 * 13 3 2 25 25 H 1.08997 * 109.47042 * 185.40995 * 1 2 3 26 26 H 1.09000 * 109.47724 * 305.41613 * 1 2 3 27 27 H 1.09006 * 109.47039 * 65.41726 * 1 2 3 28 28 H 1.09001 * 109.47366 * 239.99495 * 2 1 3 29 29 H 1.09008 * 109.47070 * 119.99474 * 2 1 3 30 30 H 0.97002 * 119.99625 * 180.02562 * 8 7 5 31 31 H 1.09004 * 110.66628 * 278.15653 * 14 13 3 32 32 H 1.08994 * 110.66580 * 41.28624 * 14 13 3 33 33 H 1.08998 * 110.72083 * 204.22664 * 15 14 13 34 34 H 1.08993 * 110.87361 * 81.01294 * 15 14 13 35 35 H 1.08999 * 109.47169 * 189.28427 * 18 16 15 36 36 H 1.08999 * 109.47246 * 309.28479 * 18 16 15 37 37 H 1.08999 * 109.47063 * 300.00088 * 19 18 16 38 38 H 1.08999 * 109.46945 * 59.99890 * 19 18 16 39 39 H 1.09001 * 109.46606 * 59.99631 * 23 22 20 40 40 H 1.08998 * 109.47019 * 179.97438 * 23 22 20 41 41 H 1.09000 * 109.47235 * 300.00175 * 23 22 20 42 42 H 1.09005 * 109.90800 * 333.50880 * 24 13 3 43 43 H 1.08998 * 109.91881 * 94.59665 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1300 1.4425 -0.0094 5 6 1.5270 2.1567 -1.2239 6 1 0.9070 3.0344 -1.1167 7 6 1.8538 1.6928 -2.4804 8 7 2.6089 0.6239 -2.6109 9 14 1.2243 2.5825 -3.9975 10 1 1.7199 3.9823 -3.9917 11 1 1.7137 1.8896 -5.2165 12 1 -0.2607 2.5831 -3.9904 13 7 1.5608 2.1313 1.2057 14 6 2.0435 1.4511 2.4347 15 6 1.9156 2.5486 3.5209 16 6 2.3173 3.8343 2.7623 17 1 3.3662 4.0695 2.9424 18 6 1.4301 5.0041 3.1927 19 6 1.7599 5.3901 4.6361 20 6 0.8856 6.5419 5.0603 21 8 0.0815 7.0067 4.2874 22 8 1.0008 7.0521 6.2964 23 6 0.1270 8.1610 6.6360 24 6 2.0901 3.5107 1.2740 25 1 -0.3633 -1.0231 0.0969 26 1 -0.3634 0.5955 0.8375 27 1 -0.3633 0.4275 -0.9346 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.8391 0.2977 -3.4950 31 1 1.4111 0.5964 2.6751 32 1 3.0825 1.1422 2.3205 33 1 2.6020 2.3570 4.3456 34 1 0.8899 2.6190 3.8830 35 1 1.6104 5.8569 2.5383 36 1 0.3828 4.7096 3.1257 37 1 1.5796 4.5374 5.2905 38 1 2.8072 5.6846 4.7031 39 1 -0.9124 7.8454 6.5451 40 1 0.3222 8.4767 7.6609 41 1 0.3149 8.9928 5.9572 42 1 3.0338 3.5734 0.7320 43 1 1.3691 4.2068 0.8454 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:48 Heat of formation + Delta-G solvation = -116.401561 kcal Electronic energy + Delta-G solvation = -21209.233016 eV Core-core repulsion = 18060.170308 eV Total energy + Delta-G solvation = -3149.062709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.48629 -40.09867 -37.65992 -36.70101 -34.48034 -33.01474 -30.87515 -29.99641 -28.35403 -27.78694 -25.54709 -24.36051 -22.83038 -21.65135 -20.81659 -20.62922 -18.55154 -18.05475 -17.62961 -17.47571 -17.05004 -16.39666 -16.03672 -15.49913 -14.97856 -14.79178 -14.44188 -14.27168 -13.98677 -13.96343 -13.48459 -13.39044 -13.06667 -12.86468 -12.80544 -12.70436 -12.45329 -12.39644 -12.21415 -11.91101 -11.78799 -11.65622 -11.56099 -11.51000 -11.42654 -11.30734 -11.14067 -10.80235 -10.46382 -8.91647 -8.08457 -6.17911 1.21468 1.40326 1.41400 1.48909 1.81561 2.42660 3.19576 3.54241 3.71261 3.78477 3.94630 3.99131 4.29458 4.32125 4.35155 4.44757 4.55237 4.60930 4.67195 4.70466 4.75392 4.77032 4.79887 4.88753 4.95524 5.04018 5.14640 5.18182 5.25514 5.27220 5.34514 5.40800 5.44631 5.49429 5.58535 5.74106 5.78001 5.88389 6.32048 6.43352 6.74067 6.76386 6.95139 7.49915 8.96908 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.003992 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.323467 B = 7011.481499 C = 7677.310047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.105 4.105 3 C 0.217 3.783 4 H -0.042 1.042 5 C -0.505 4.505 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.949 3.051 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.273 1.273 13 N -0.518 5.518 14 C 0.028 3.972 15 C -0.106 4.106 16 C -0.087 4.087 17 H 0.091 0.909 18 C -0.088 4.088 19 C -0.104 4.104 20 C 0.459 3.541 21 O -0.546 6.546 22 O -0.364 6.364 23 C 0.027 3.973 24 C 0.054 3.946 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.028 0.972 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.075 0.925 32 H 0.024 0.976 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.131 0.869 38 H 0.131 0.869 39 H 0.058 0.942 40 H 0.132 0.868 41 H 0.058 0.942 42 H 0.015 0.985 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.621 8.895 19.202 21.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C 0.109 3.891 4 H -0.025 1.025 5 C -0.543 4.543 6 H 0.067 0.933 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.775 3.225 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.243 5.243 14 C -0.100 4.100 15 C -0.144 4.144 16 C -0.106 4.106 17 H 0.109 0.891 18 C -0.126 4.126 19 C -0.141 4.141 20 C 0.304 3.696 21 O -0.437 6.437 22 O -0.280 6.280 23 C -0.066 4.066 24 C -0.075 4.075 25 H 0.058 0.942 26 H 0.072 0.928 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.077 0.923 40 H 0.150 0.850 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.364 8.945 18.811 20.875 hybrid contribution 0.512 0.458 -1.593 1.735 sum -0.852 9.403 17.219 19.638 Atomic orbital electron populations 1.21309 0.95873 0.98629 1.00671 1.21400 0.96356 0.97375 0.99203 1.19195 0.90238 0.91982 0.87650 1.02503 1.21216 1.30506 1.11624 0.90997 0.93336 1.25590 0.95518 0.95814 1.01455 1.70002 1.38189 1.24169 1.23560 0.85750 0.78815 0.78737 0.79186 1.20016 1.20890 1.19873 1.64728 1.55552 1.01793 1.02202 1.23243 0.97345 0.98249 0.91135 1.22592 1.02752 0.92244 0.96770 1.21994 1.00174 0.95320 0.93119 0.89086 1.21340 0.99681 0.97259 0.94322 1.21503 1.00403 0.94547 0.97663 1.24447 0.81950 0.83815 0.79354 1.90684 1.37667 1.61220 1.54082 1.86508 1.60211 1.48548 1.32764 1.23509 0.93335 0.86474 1.03285 1.22646 0.96916 0.91695 0.96195 0.94228 0.92807 0.95270 0.92263 0.95170 0.93095 0.90699 0.95775 0.88291 0.90315 0.92465 0.92382 0.85126 0.85102 0.92318 0.84963 0.92317 0.96651 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.47 71.98 0.68 -4.11 16 2 C -0.10 -5.11 5.22 30.60 0.16 -4.95 16 3 C 0.22 11.12 1.44 44.17 0.06 11.18 16 4 H -0.04 -2.46 7.99 -2.38 -0.02 -2.48 16 5 C -0.50 -28.24 6.94 25.60 0.18 -28.06 16 6 H 0.05 2.76 7.42 -2.91 -0.02 2.74 16 7 C 0.01 0.82 5.31 84.65 0.45 1.27 16 8 N -0.92 -53.66 11.33 21.45 0.24 -53.42 16 9 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 10 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.52 -22.00 4.26 -862.23 -3.68 -25.68 16 14 C 0.03 0.96 5.40 86.65 0.47 1.42 16 15 C -0.11 -2.55 5.87 31.80 0.19 -2.36 16 16 C -0.09 -2.29 3.00 -9.92 -0.03 -2.32 16 17 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.09 -2.12 3.66 30.59 0.11 -2.01 16 19 C -0.10 -1.74 5.68 29.85 0.17 -1.57 16 20 C 0.46 10.11 7.96 71.23 0.57 10.67 16 21 O -0.55 -16.33 15.73 21.96 0.35 -15.98 16 22 O -0.36 -6.73 10.57 -51.38 -0.54 -7.28 16 23 C 0.03 0.37 10.56 113.37 1.20 1.57 16 24 C 0.05 2.09 5.46 86.45 0.47 2.56 16 25 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 2.29 7.46 -2.39 -0.02 2.27 16 27 H 0.03 1.41 7.40 -2.38 -0.02 1.40 16 28 H 0.06 3.26 6.10 -2.39 -0.01 3.25 16 29 H 0.03 1.32 6.90 -2.38 -0.02 1.31 16 30 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.07 2.47 7.65 -2.38 -0.02 2.45 16 32 H 0.02 0.85 8.00 -2.39 -0.02 0.84 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 34 H 0.08 1.81 7.76 -2.39 -0.02 1.79 16 35 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 36 H 0.06 1.63 7.95 -2.39 -0.02 1.61 16 37 H 0.13 1.60 7.58 -2.39 -0.02 1.59 16 38 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 40 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 42 H 0.02 0.65 7.69 -2.38 -0.02 0.64 16 43 H 0.05 2.22 7.54 -2.39 -0.02 2.20 16 Total: -1.00 -68.44 339.55 4.03 -64.41 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.96 Total: 7.73 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 4.67 Total: -16.70 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -3.43 Total: -79.09 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.20 Total: -23.26 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -68.44 4.03 -64.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.992 kcal (2) G-P(sol) polarization free energy of solvation -68.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds