Wall clock time and date at job start Mon Mar 30 2020 01:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47253 * 2 1 4 4 H 1.09001 * 109.47145 * 55.00403 * 3 2 1 5 5 C 1.50700 * 109.47095 * 174.99950 * 3 2 1 6 6 H 1.07997 * 120.00316 * 120.00404 * 5 3 2 7 7 C 1.37876 * 119.99947 * 300.00240 * 5 3 2 8 8 N 1.31511 * 120.00332 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00030 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46886 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47145 * 120.00012 * 9 7 5 12 12 H 1.48500 * 109.47298 * 240.00120 * 9 7 5 13 13 N 1.46895 * 109.47405 * 294.99942 * 3 2 1 14 14 C 1.46847 * 110.99982 * 174.99705 * 13 3 2 15 15 C 1.53034 * 109.51345 * 185.84805 * 14 13 3 16 16 C 1.53123 * 109.27992 * 300.80438 * 15 14 13 17 17 C 1.53002 * 109.53088 * 297.76946 * 16 15 14 18 18 C 1.50695 * 109.52378 * 177.57008 * 16 15 14 19 19 O 1.20831 * 120.00408 * 240.32702 * 18 16 15 20 20 O 1.34229 * 120.00018 * 60.33233 * 18 16 15 21 21 C 1.45207 * 117.00164 * 179.97438 * 20 18 16 22 22 C 1.53127 * 109.15019 * 57.67185 * 16 15 14 23 23 C 1.46843 * 110.99970 * 299.21070 * 13 3 2 24 24 H 1.09004 * 109.47443 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47127 * 299.99690 * 1 2 3 26 26 H 1.09004 * 109.47211 * 59.99879 * 1 2 3 27 27 H 1.09006 * 109.46641 * 239.99716 * 2 1 3 28 28 H 1.08996 * 109.47064 * 120.00769 * 2 1 3 29 29 H 0.97003 * 120.00643 * 179.97438 * 8 7 5 30 30 H 1.09002 * 109.46481 * 305.85957 * 14 13 3 31 31 H 1.08994 * 109.46283 * 65.83811 * 14 13 3 32 32 H 1.08997 * 109.50952 * 60.75924 * 15 14 13 33 33 H 1.08998 * 109.50459 * 180.87821 * 15 14 13 34 34 H 1.09007 * 109.46974 * 179.67738 * 17 16 15 35 35 H 1.08998 * 109.47153 * 299.67175 * 17 16 15 36 36 H 1.08998 * 109.47206 * 59.67919 * 17 16 15 37 37 H 1.08994 * 109.46744 * 299.99968 * 21 20 18 38 38 H 1.08999 * 109.46583 * 59.99838 * 21 20 18 39 39 H 1.08997 * 109.46660 * 180.02562 * 21 20 18 40 40 H 1.08997 * 109.49981 * 182.39822 * 22 16 15 41 41 H 1.08998 * 109.53089 * 62.30397 * 22 16 15 42 42 H 1.08993 * 109.46313 * 294.17341 * 23 13 3 43 43 H 1.09000 * 109.46480 * 54.15451 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4442 0.1238 6 1 4.1472 1.8888 -0.6522 7 6 4.1432 0.8782 1.2280 8 7 3.4062 0.3373 2.1733 9 14 6.0049 0.8798 1.3812 10 1 6.5987 1.5450 0.1937 11 1 6.4000 1.6154 2.6092 12 1 6.4961 -0.5193 1.4626 13 7 1.6514 2.0992 -1.2552 14 6 2.0207 3.5205 -1.2417 15 6 1.4733 4.2028 -2.4973 16 6 2.0526 3.5177 -3.7383 17 6 3.5742 3.6777 -3.7475 18 6 1.4711 4.1465 -4.9782 19 8 0.8355 3.4742 -5.7554 20 8 1.6594 5.4534 -5.2194 21 6 1.0712 5.9912 -6.4332 22 6 1.6948 2.0293 -3.7034 23 6 2.2355 1.4098 -2.4126 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8932 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.8292 -0.0612 2.9499 30 1 1.5993 3.9969 -0.3565 31 1 3.1065 3.6134 -1.2219 32 1 0.3864 4.1222 -2.5110 33 1 1.7608 5.2542 -2.4949 34 1 3.9860 3.1848 -4.6283 35 1 3.8279 4.7375 -3.7724 36 1 3.9926 3.2248 -2.8487 37 1 1.4835 5.4714 -7.2979 38 1 -0.0094 5.8510 -6.4062 39 1 1.2984 7.0547 -6.5066 40 1 2.1404 1.5277 -4.5624 41 1 0.6114 1.9140 -3.7364 42 1 3.3203 1.5126 -2.3872 43 1 1.9699 0.3532 -2.3781 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:59 Heat of formation + Delta-G solvation = -94.674740 kcal Electronic energy + Delta-G solvation = -22362.851225 eV Core-core repulsion = 19214.730662 eV Total energy + Delta-G solvation = -3148.120563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.77405 -38.66802 -36.44207 -35.24518 -32.30454 -31.11546 -30.25746 -28.08769 -27.53183 -26.02766 -24.29896 -22.82459 -22.47737 -20.92367 -19.27865 -18.32149 -17.22824 -16.83545 -16.29680 -16.06543 -15.15310 -14.40970 -14.32362 -13.90356 -13.70233 -13.60710 -13.32687 -12.89883 -12.72084 -12.27028 -12.11314 -11.76335 -11.73913 -11.57980 -11.45831 -11.13780 -10.94326 -10.82330 -10.77611 -10.65212 -10.56530 -10.41449 -10.15573 -9.97621 -9.72099 -9.62938 -9.28631 -9.04833 -8.36526 -7.09044 -5.99269 -4.13221 2.31100 2.77622 3.24424 3.33676 3.35665 4.38191 4.71395 4.87780 4.94218 5.01104 5.07898 5.16808 5.25161 5.30701 5.43174 5.74519 5.75939 5.85001 6.01065 6.10584 6.12223 6.25520 6.26247 6.31262 6.37112 6.40744 6.48644 6.53829 6.67059 6.73531 6.76376 6.91410 7.12960 7.21188 7.35047 7.61955 7.76497 7.83731 7.98593 8.15657 8.33036 8.47228 8.97163 9.54575 10.99396 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024886 B = 0.005552 C = 0.004929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.841643 B = 5041.798714 C = 5679.830639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.113 4.113 3 C 0.214 3.786 4 H 0.039 0.961 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.535 5.535 14 C 0.065 3.935 15 C -0.102 4.102 16 C -0.046 4.046 17 C -0.146 4.146 18 C 0.471 3.529 19 O -0.511 6.511 20 O -0.357 6.357 21 C 0.034 3.966 22 C -0.095 4.095 23 C 0.060 3.940 24 H 0.024 0.976 25 H 0.039 0.961 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.667 8.049 -11.385 14.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.057 0.943 5 C -0.581 4.581 6 H 0.074 0.926 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.259 5.259 14 C -0.064 4.064 15 C -0.140 4.140 16 C -0.048 4.048 17 C -0.203 4.203 18 C 0.315 3.685 19 O -0.398 6.398 20 O -0.274 6.274 21 C -0.060 4.060 22 C -0.133 4.133 23 C -0.068 4.068 24 H 0.043 0.957 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.116 0.884 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.370 7.748 -11.503 14.273 hybrid contribution 1.824 0.048 -0.028 1.824 sum -1.546 7.796 -11.531 14.005 Atomic orbital electron populations 1.21713 0.98843 0.98412 1.00616 1.21637 0.92285 0.99228 1.01990 1.19275 0.93043 0.91150 0.85745 0.94289 1.21760 0.92846 1.38052 1.05423 0.92550 1.24898 0.97673 0.95058 0.95719 1.69880 1.34659 1.38316 1.09421 0.86661 0.86373 0.77716 0.77962 1.19955 1.21068 1.21051 1.62407 1.58271 1.00999 1.04228 1.21850 0.98789 0.90343 0.95413 1.21694 1.00803 0.98618 0.92931 1.20662 0.97113 0.96937 0.90040 1.21977 0.92151 1.02598 1.03542 1.24147 0.76945 0.79943 0.87494 1.90626 1.38169 1.63013 1.47967 1.86545 1.70922 1.26683 1.43228 1.23216 0.98642 0.99082 0.85077 1.21617 1.02271 0.90835 0.98579 1.21976 0.97468 0.98508 0.88880 0.95655 0.94225 0.93347 0.94775 0.88970 0.92962 0.91294 0.93823 0.91346 0.91219 0.92643 0.91723 0.89647 0.92197 0.92087 0.88357 0.91853 0.90924 0.93950 0.90541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.80 37.16 0.36 -2.42 16 2 C -0.11 -2.60 5.06 -26.74 -0.14 -2.74 16 3 C 0.21 5.03 1.75 -68.87 -0.12 4.91 16 4 H 0.04 1.03 8.08 -51.93 -0.42 0.61 16 5 C -0.54 -13.76 7.19 -34.44 -0.25 -14.01 16 6 H 0.06 1.43 5.84 -52.49 -0.31 1.12 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.20 11.29 55.43 0.63 -23.58 16 9 Si 0.88 20.52 29.54 -169.99 -5.02 15.50 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -10.68 4.10 -228.09 -0.93 -11.61 16 14 C 0.06 1.17 4.87 -3.84 -0.02 1.15 16 15 C -0.10 -1.55 4.82 -26.65 -0.13 -1.68 16 16 C -0.05 -0.70 0.71 -155.53 -0.11 -0.81 16 17 C -0.15 -2.04 7.83 37.16 0.29 -1.75 16 18 C 0.47 7.14 6.56 36.00 0.24 7.38 16 19 O -0.51 -8.82 15.73 -18.75 -0.29 -9.12 16 20 O -0.36 -4.71 10.40 -39.25 -0.41 -5.11 16 21 C 0.03 0.33 10.56 101.05 1.07 1.39 16 22 C -0.10 -1.55 4.19 -26.64 -0.11 -1.67 16 23 C 0.06 1.12 4.56 -3.83 -0.02 1.10 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 27 H 0.03 0.77 6.05 -51.93 -0.31 0.45 16 28 H 0.09 2.39 5.95 -51.93 -0.31 2.08 16 29 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 31 H 0.04 0.83 5.33 -51.93 -0.28 0.56 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.08 1.34 4.92 -51.93 -0.26 1.08 16 37 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 38 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 42 H 0.04 0.84 5.00 -51.93 -0.26 0.58 16 43 H 0.08 1.49 5.93 -51.93 -0.31 1.18 16 LS Contribution 326.21 15.07 4.92 4.92 Total: -1.00 -27.85 326.21 -7.19 -35.04 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.05 Total: 1.38 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 0.97 Total: -7.42 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: -0.31 Total: -35.19 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -0.70 Total: -14.23 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.85 -7.19 -35.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.633 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds