Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87235 * 2 1 4 4 O 1.43745 * 109.87824 * 121.16691 * 2 1 3 5 5 C 1.44374 * 106.97576 * 145.93286 * 4 2 1 6 6 H 1.09002 * 110.61706 * 78.43563 * 5 4 2 7 7 C 1.52997 * 110.62186 * 201.27750 * 5 4 2 8 8 C 1.54998 * 103.49413 * 319.93824 * 5 4 2 9 9 H 1.08995 * 110.90874 * 155.21806 * 8 5 4 10 10 C 1.52996 * 110.90427 * 278.82714 * 8 5 4 11 11 C 1.54102 * 109.87257 * 238.99183 * 2 1 3 12 12 H 1.09009 * 110.48314 * 119.74174 * 11 2 1 13 13 C 1.50697 * 110.49204 * 357.22870 * 11 2 1 14 14 O 1.21280 * 119.99292 * 303.51288 * 13 11 2 15 15 N 1.34768 * 120.00497 * 123.51450 * 13 11 2 16 16 C 1.46502 * 120.00218 * 175.39072 * 15 13 11 17 17 C 1.53003 * 109.46934 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46787 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47198 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99449 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00132 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99941 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46981 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46866 * 120.00383 * 23 21 19 26 26 H 1.48495 * 109.47196 * 240.00024 * 23 21 19 27 27 H 1.08992 * 109.47569 * 189.01616 * 1 2 3 28 28 H 1.09000 * 109.46535 * 309.01078 * 1 2 3 29 29 H 1.09001 * 109.47239 * 69.00465 * 1 2 3 30 30 H 1.09007 * 109.47045 * 58.54157 * 7 5 4 31 31 H 1.08995 * 109.47452 * 178.54552 * 7 5 4 32 32 H 1.09002 * 109.46932 * 298.55001 * 7 5 4 33 33 H 1.09001 * 109.47369 * 170.52731 * 10 8 5 34 34 H 1.08996 * 109.47509 * 290.52670 * 10 8 5 35 35 H 1.09003 * 109.47508 * 50.53316 * 10 8 5 36 36 H 0.97004 * 120.00183 * 355.38606 * 15 13 11 37 37 H 1.08994 * 109.47027 * 60.00257 * 16 15 13 38 38 H 1.08999 * 109.46929 * 299.99935 * 16 15 13 39 39 H 1.09004 * 109.46664 * 60.00510 * 17 16 15 40 40 H 1.08999 * 109.47588 * 299.99934 * 17 16 15 41 41 H 1.09005 * 109.47092 * 60.00437 * 18 17 16 42 42 H 1.08999 * 109.47250 * 300.00444 * 18 17 16 43 43 H 0.96991 * 120.00274 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0188 -0.6996 1.1567 5 6 3.2378 -1.3653 0.7628 6 1 4.0684 -0.6600 0.7345 7 6 3.5495 -2.5245 1.7114 8 6 2.9194 -1.8907 -0.6603 9 1 3.8330 -2.0208 -1.2403 10 6 2.1255 -3.1969 -0.5950 11 6 2.0539 -0.7466 -1.2421 12 1 2.6600 -0.0828 -1.8588 13 6 0.9072 -1.3076 -2.0430 14 8 0.1103 -2.0564 -1.5184 15 7 0.7672 -0.9774 -3.3421 16 6 -0.2866 -1.6003 -4.1469 17 6 -0.2277 -1.0543 -5.5750 18 6 -1.3279 -1.7054 -6.4156 19 6 -1.2695 -1.1681 -7.8224 20 1 -0.5221 -0.4359 -8.0901 21 6 -2.1701 -1.6113 -8.7675 22 7 -3.0805 -2.5026 -8.4413 23 14 -2.0982 -0.9448 -10.5111 24 1 -0.9916 0.0394 -10.6195 25 1 -1.8603 -2.0630 -11.4590 26 1 -3.3852 -0.2817 -10.8411 27 1 -0.3634 -1.0149 0.1610 28 1 -0.3632 0.6469 0.7986 29 1 -0.3634 0.3682 -0.9594 30 1 2.7193 -3.2309 1.7070 31 1 4.4578 -3.0292 1.3824 32 1 3.6932 -2.1392 2.7209 33 1 1.7704 -3.4565 -1.5923 34 1 2.7671 -3.9937 -0.2190 35 1 1.2731 -3.0711 0.0727 36 1 1.3642 -0.3271 -3.7443 37 1 -1.2592 -1.3723 -3.7110 38 1 -0.1402 -2.6802 -4.1640 39 1 0.7450 -1.2820 -6.0111 40 1 -0.3743 0.0256 -5.5575 41 1 -2.3007 -1.4781 -5.9796 42 1 -1.1808 -2.7852 -6.4330 43 1 -3.7144 -2.8142 -9.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087215798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = -103.117058 kcal Electronic energy + Delta-G solvation = -21218.924194 eV Core-core repulsion = 18070.437544 eV Total energy + Delta-G solvation = -3148.486649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.09659 -38.59054 -35.47350 -33.85528 -33.35620 -32.76642 -31.17127 -29.24651 -27.74538 -26.53997 -24.22251 -23.16921 -21.88650 -20.72471 -20.32079 -19.46141 -17.35094 -16.70377 -16.41793 -15.81043 -15.69086 -15.23931 -14.63675 -14.43790 -14.31579 -14.08219 -13.35659 -12.92538 -12.87841 -12.47268 -12.32247 -12.13409 -11.99523 -11.97116 -11.81908 -11.68484 -11.35208 -11.17130 -10.93290 -10.89242 -10.75757 -10.71888 -10.58436 -9.89479 -9.82496 -9.68641 -9.28152 -9.10701 -8.72209 -8.39968 -6.04279 -4.07531 2.67693 3.28107 3.32144 3.35996 3.39523 3.56114 4.24895 4.41809 4.44299 4.59398 4.70428 4.85975 5.01917 5.09311 5.20818 5.30115 5.31611 5.32958 5.40999 5.50247 5.67188 5.69085 5.73652 5.75162 5.84396 5.90655 5.93643 6.05316 6.13038 6.25776 6.47508 6.52048 6.56613 6.79549 6.81096 6.97669 7.60895 7.69353 7.73072 7.94392 8.34473 8.39441 8.99410 9.56959 11.07044 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044438 B = 0.003094 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.945134 B = 9048.489832 C = 9143.995820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.096 3.904 3 H 0.072 0.928 4 O -0.364 6.364 5 C 0.077 3.923 6 H 0.069 0.931 7 C -0.148 4.148 8 C -0.104 4.104 9 H 0.088 0.912 10 C -0.139 4.139 11 C -0.143 4.143 12 H 0.096 0.904 13 C 0.520 3.480 14 O -0.528 6.528 15 N -0.727 5.727 16 C 0.117 3.883 17 C -0.121 4.121 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.056 0.944 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.397 0.603 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.338 3.713 17.678 23.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.090 0.910 4 O -0.283 6.283 5 C 0.020 3.980 6 H 0.087 0.913 7 C -0.205 4.205 8 C -0.123 4.123 9 H 0.106 0.894 10 C -0.196 4.196 11 C -0.165 4.165 12 H 0.114 0.886 13 C 0.306 3.694 14 O -0.405 6.405 15 N -0.378 5.378 16 C -0.006 4.006 17 C -0.159 4.159 18 C -0.014 4.014 19 C -0.561 4.561 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.498 3.043 18.172 22.841 hybrid contribution 0.408 0.788 -1.614 1.842 sum 13.906 3.831 16.558 21.960 Atomic orbital electron populations 1.22233 0.92984 1.04871 1.01689 1.22484 0.95982 0.94508 0.83261 0.90991 1.88910 1.39515 1.67343 1.32573 1.23128 0.87834 0.93914 0.93138 0.91331 1.21834 1.02285 0.97380 0.99034 1.22601 0.98210 0.95406 0.96070 0.89389 1.21921 0.99930 0.94323 1.03400 1.22862 0.96763 0.98893 0.98002 0.88568 1.19983 0.85921 0.81483 0.82003 1.90683 1.43821 1.36284 1.69694 1.46322 1.35812 1.45184 1.10451 1.21635 0.89853 0.97461 0.91637 1.21886 1.01732 1.00209 0.92044 1.19031 0.92622 0.96005 0.93733 1.21238 1.15539 1.24250 0.95033 0.92612 1.25033 0.95403 0.95087 0.98955 1.69972 1.18341 1.30596 1.34348 0.86530 0.77909 0.78834 0.84682 1.19758 1.20984 1.20973 0.89067 0.92569 0.91685 0.91028 0.91203 0.91982 0.92099 0.93098 0.90470 0.76950 0.91734 0.91886 0.92793 0.92757 0.96282 0.96312 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.00 8.21 37.16 0.31 -1.70 16 2 C 0.10 1.06 4.05 -26.15 -0.11 0.96 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 4 O -0.36 -4.40 10.85 -35.23 -0.38 -4.78 16 5 C 0.08 0.73 3.78 -25.68 -0.10 0.63 16 6 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 7 C -0.15 -1.20 8.92 37.16 0.33 -0.87 16 8 C -0.10 -1.03 3.46 -88.61 -0.31 -1.34 16 9 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 10 C -0.14 -1.64 6.45 37.16 0.24 -1.40 16 11 C -0.14 -1.51 3.41 -90.24 -0.31 -1.82 16 12 H 0.10 0.76 7.97 -51.92 -0.41 0.35 16 13 C 0.52 7.13 4.20 -10.99 -0.05 7.08 16 14 O -0.53 -8.89 11.11 5.56 0.06 -8.83 16 15 N -0.73 -9.87 5.55 -60.30 -0.33 -10.20 16 16 C 0.12 1.99 5.68 -4.04 -0.02 1.97 16 17 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 20 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 23 Si 0.89 21.37 29.54 -169.99 -5.02 16.34 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H 0.09 1.36 6.28 -51.93 -0.33 1.04 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.83 7.17 -51.93 -0.37 0.46 16 30 H 0.07 0.65 6.47 -51.92 -0.34 0.32 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.84 6.53 -51.93 -0.34 0.50 16 34 H 0.05 0.50 7.27 -51.93 -0.38 0.12 16 35 H 0.08 1.08 6.99 -51.93 -0.36 0.71 16 36 H 0.40 4.34 8.35 -40.82 -0.34 4.00 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -31.42 335.41 -8.07 -39.49 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.48 Total: 0.68 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -0.70 Total: -11.78 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.40 Total: -36.18 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: -0.32 Total: -13.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.42 -8.07 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087215798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.623 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds