Wall clock time and date at job start Mon Mar 30 2020 01:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.87235 * 2 1 4 4 O 1.43745 * 109.87824 * 121.16691 * 2 1 3 5 5 C 1.44374 * 106.97576 * 145.93286 * 4 2 1 6 6 H 1.09002 * 110.61706 * 78.43563 * 5 4 2 7 7 C 1.52997 * 110.62186 * 201.27750 * 5 4 2 8 8 C 1.54998 * 103.49413 * 319.93824 * 5 4 2 9 9 H 1.08995 * 110.90874 * 155.21806 * 8 5 4 10 10 C 1.52996 * 110.90427 * 278.82714 * 8 5 4 11 11 C 1.54102 * 109.87257 * 238.99183 * 2 1 3 12 12 H 1.09009 * 110.48314 * 119.74174 * 11 2 1 13 13 C 1.50697 * 110.49204 * 357.22870 * 11 2 1 14 14 O 1.21280 * 119.99292 * 303.51288 * 13 11 2 15 15 N 1.34768 * 120.00497 * 123.51450 * 13 11 2 16 16 C 1.46502 * 120.00218 * 175.39072 * 15 13 11 17 17 C 1.53003 * 109.46934 * 179.97438 * 16 15 13 18 18 C 1.53003 * 109.46787 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.47198 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99449 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00132 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99941 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46981 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46866 * 120.00383 * 23 21 19 26 26 H 1.48495 * 109.47196 * 240.00024 * 23 21 19 27 27 H 1.08992 * 109.47569 * 189.01616 * 1 2 3 28 28 H 1.09000 * 109.46535 * 309.01078 * 1 2 3 29 29 H 1.09001 * 109.47239 * 69.00465 * 1 2 3 30 30 H 1.09007 * 109.47045 * 58.54157 * 7 5 4 31 31 H 1.08995 * 109.47452 * 178.54552 * 7 5 4 32 32 H 1.09002 * 109.46932 * 298.55001 * 7 5 4 33 33 H 1.09001 * 109.47369 * 170.52731 * 10 8 5 34 34 H 1.08996 * 109.47509 * 290.52670 * 10 8 5 35 35 H 1.09003 * 109.47508 * 50.53316 * 10 8 5 36 36 H 0.97004 * 120.00183 * 355.38606 * 15 13 11 37 37 H 1.08994 * 109.47027 * 60.00257 * 16 15 13 38 38 H 1.08999 * 109.46929 * 299.99935 * 16 15 13 39 39 H 1.09004 * 109.46664 * 60.00510 * 17 16 15 40 40 H 1.08999 * 109.47588 * 299.99934 * 17 16 15 41 41 H 1.09005 * 109.47092 * 60.00437 * 18 17 16 42 42 H 1.08999 * 109.47250 * 300.00444 * 18 17 16 43 43 H 0.96991 * 120.00274 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0188 -0.6996 1.1567 5 6 3.2378 -1.3653 0.7628 6 1 4.0684 -0.6600 0.7345 7 6 3.5495 -2.5245 1.7114 8 6 2.9194 -1.8907 -0.6603 9 1 3.8330 -2.0208 -1.2403 10 6 2.1255 -3.1969 -0.5950 11 6 2.0539 -0.7466 -1.2421 12 1 2.6600 -0.0828 -1.8588 13 6 0.9072 -1.3076 -2.0430 14 8 0.1103 -2.0564 -1.5184 15 7 0.7672 -0.9774 -3.3421 16 6 -0.2866 -1.6003 -4.1469 17 6 -0.2277 -1.0543 -5.5750 18 6 -1.3279 -1.7054 -6.4156 19 6 -1.2695 -1.1681 -7.8224 20 1 -0.5221 -0.4359 -8.0901 21 6 -2.1701 -1.6113 -8.7675 22 7 -3.0805 -2.5026 -8.4413 23 14 -2.0982 -0.9448 -10.5111 24 1 -0.9916 0.0394 -10.6195 25 1 -1.8603 -2.0630 -11.4590 26 1 -3.3852 -0.2817 -10.8411 27 1 -0.3634 -1.0149 0.1610 28 1 -0.3632 0.6469 0.7986 29 1 -0.3634 0.3682 -0.9594 30 1 2.7193 -3.2309 1.7070 31 1 4.4578 -3.0292 1.3824 32 1 3.6932 -2.1392 2.7209 33 1 1.7704 -3.4565 -1.5923 34 1 2.7671 -3.9937 -0.2190 35 1 1.2731 -3.0711 0.0727 36 1 1.3642 -0.3271 -3.7443 37 1 -1.2592 -1.3723 -3.7110 38 1 -0.1402 -2.6802 -4.1640 39 1 0.7450 -1.2820 -6.0111 40 1 -0.3743 0.0256 -5.5575 41 1 -2.3007 -1.4781 -5.9796 42 1 -1.1808 -2.7852 -6.4330 43 1 -3.7144 -2.8142 -9.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087215798.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:41 Heat of formation + Delta-G solvation = -124.030760 kcal Electronic energy + Delta-G solvation = -21219.831080 eV Core-core repulsion = 18070.437544 eV Total energy + Delta-G solvation = -3149.393536 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.03822 -39.61937 -36.96251 -35.19219 -34.67412 -33.74922 -32.87748 -30.04205 -29.06522 -27.96548 -25.49643 -24.43732 -23.03610 -22.31611 -21.11743 -20.63472 -18.56173 -18.21118 -17.59335 -16.96162 -16.78480 -16.45177 -16.31688 -15.79994 -15.42474 -14.99166 -14.48286 -14.23543 -13.96308 -13.79517 -13.68460 -13.49095 -13.29324 -12.92729 -12.84953 -12.81911 -12.55254 -12.53058 -12.44672 -12.34066 -12.00663 -11.71867 -11.64855 -11.55096 -11.50089 -11.21038 -10.62786 -10.57354 -10.45490 -9.96062 -8.20649 -6.32335 1.41269 1.41355 1.54640 1.60921 2.20158 2.41972 2.79641 3.13258 3.42068 3.58244 3.79176 3.93102 4.08732 4.17237 4.21005 4.23099 4.37110 4.40867 4.53275 4.54725 4.55661 4.60649 4.72950 4.87890 4.93308 4.94525 4.95722 4.99404 5.03533 5.15637 5.16298 5.29159 5.33220 5.47654 5.50181 5.56135 5.69467 5.83196 6.03274 6.21125 6.63335 6.85765 7.32011 7.37677 8.91715 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.044438 B = 0.003094 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.945134 B = 9048.489832 C = 9143.995820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.095 3.905 3 H 0.101 0.899 4 O -0.388 6.388 5 C 0.075 3.925 6 H 0.096 0.904 7 C -0.149 4.149 8 C -0.103 4.103 9 H 0.117 0.883 10 C -0.132 4.132 11 C -0.138 4.138 12 H 0.135 0.865 13 C 0.518 3.482 14 O -0.565 6.565 15 N -0.717 5.717 16 C 0.132 3.868 17 C -0.101 4.101 18 C 0.023 3.977 19 C -0.540 4.540 20 H 0.067 0.933 21 C -0.004 4.004 22 N -0.936 5.936 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.034 0.966 34 H 0.067 0.933 35 H 0.047 0.953 36 H 0.414 0.586 37 H 0.046 0.954 38 H 0.047 0.953 39 H 0.068 0.932 40 H 0.067 0.933 41 H -0.010 1.010 42 H -0.009 1.009 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.289 5.631 17.303 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.037 3.963 3 H 0.119 0.881 4 O -0.308 6.308 5 C 0.019 3.981 6 H 0.114 0.886 7 C -0.206 4.206 8 C -0.122 4.122 9 H 0.135 0.865 10 C -0.189 4.189 11 C -0.159 4.159 12 H 0.153 0.847 13 C 0.305 3.695 14 O -0.444 6.444 15 N -0.370 5.370 16 C 0.008 3.992 17 C -0.139 4.139 18 C -0.014 4.014 19 C -0.578 4.578 20 H 0.085 0.915 21 C -0.202 4.202 22 N -0.576 5.576 23 Si 0.792 3.208 24 H -0.181 1.181 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.053 0.947 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.251 0.749 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.486 4.988 17.806 24.773 hybrid contribution -0.555 0.130 -1.426 1.536 sum 15.932 5.118 16.380 23.416 Atomic orbital electron populations 1.22155 0.94886 1.02916 1.01573 1.22595 0.94580 0.95909 0.83239 0.88098 1.88894 1.40922 1.67838 1.33195 1.23361 0.87583 0.94581 0.92618 0.88601 1.21867 1.02552 0.96890 0.99269 1.22689 0.98655 0.93757 0.97113 0.86501 1.21797 0.99521 0.96522 1.01062 1.22951 0.95606 0.99660 0.97720 0.84689 1.20647 0.86335 0.80717 0.81770 1.90692 1.45422 1.37888 1.70372 1.46097 1.35146 1.45368 1.10342 1.21162 0.90318 0.96673 0.91036 1.21588 0.99965 1.00298 0.92050 1.18946 0.93458 0.94783 0.94241 1.21715 1.15652 1.24307 0.96117 0.91485 1.26036 0.94967 0.95306 1.03867 1.70117 1.19337 1.32138 1.36036 0.85362 0.78343 0.78379 0.78730 1.18095 1.20576 1.20616 0.92287 0.91765 0.92314 0.92831 0.88995 0.91636 0.94660 0.91404 0.93440 0.74913 0.93596 0.93499 0.91325 0.91426 0.99152 0.99076 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.94 8.21 71.98 0.59 -3.34 16 2 C 0.09 1.89 4.05 30.97 0.13 2.02 16 3 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 4 O -0.39 -8.73 10.85 -148.98 -1.62 -10.35 16 5 C 0.08 1.20 3.78 31.28 0.12 1.32 16 6 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 7 C -0.15 -2.11 8.92 71.98 0.64 -1.47 16 8 C -0.10 -1.77 3.46 -9.49 -0.03 -1.80 16 9 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 10 C -0.13 -3.09 6.45 71.98 0.46 -2.62 16 11 C -0.14 -2.53 3.41 -10.55 -0.04 -2.57 16 12 H 0.14 1.47 7.97 -2.38 -0.02 1.45 16 13 C 0.52 13.84 4.20 87.66 0.37 14.21 16 14 O -0.56 -19.81 11.11 -3.03 -0.03 -19.84 16 15 N -0.72 -18.59 5.55 -463.08 -2.57 -21.16 16 16 C 0.13 4.58 5.68 86.38 0.49 5.07 16 17 C -0.10 -3.83 5.27 30.60 0.16 -3.67 16 18 C 0.02 1.21 4.97 29.85 0.15 1.36 16 19 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 20 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 21 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 22 N -0.94 -57.23 13.29 21.44 0.28 -56.94 16 23 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H 0.06 1.86 6.28 -2.39 -0.02 1.84 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.49 7.17 -2.39 -0.02 1.47 16 30 H 0.05 0.95 6.47 -2.38 -0.02 0.93 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.03 0.98 6.53 -2.39 -0.02 0.97 16 34 H 0.07 1.29 7.27 -2.39 -0.02 1.27 16 35 H 0.05 1.38 6.99 -2.39 -0.02 1.37 16 36 H 0.41 7.85 8.35 -92.71 -0.77 7.08 16 37 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 41 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 42 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -70.96 335.41 2.03 -68.93 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.20 Total: 14.79 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: 3.74 Total: -21.05 kcal Atomic # 7 Polarization: -75.81 SS G_CDS: -2.29 Total: -78.10 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.65 Total: -30.19 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -70.96 2.03 -68.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087215798.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.104 kcal (2) G-P(sol) polarization free energy of solvation -70.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds