Wall clock time and date at job start Mon Mar 30 2020 01:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.70456 * 2 1 4 4 C 1.53192 * 109.58863 * 239.64339 * 2 1 3 5 5 H 1.08998 * 109.52568 * 174.88004 * 4 2 1 6 6 C 1.50700 * 109.49653 * 54.79702 * 4 2 1 7 7 O 1.20824 * 120.00108 * 266.42857 * 6 4 2 8 8 O 1.34238 * 119.99439 * 86.42868 * 6 4 2 9 9 C 1.45197 * 116.99664 * 180.02562 * 8 6 4 10 10 C 1.53005 * 109.47463 * 59.99522 * 9 8 6 11 11 C 1.52994 * 109.47267 * 179.97438 * 9 8 6 12 12 C 1.53011 * 109.47183 * 299.99965 * 9 8 6 13 13 C 1.53042 * 109.31160 * 294.84940 * 4 2 1 14 14 C 1.53036 * 109.53883 * 298.62997 * 13 4 2 15 15 C 1.53199 * 109.31069 * 61.36764 * 14 13 4 16 16 N 1.46926 * 108.77441 * 305.36177 * 15 14 13 17 17 C 1.36934 * 120.62997 * 233.33518 * 16 15 14 18 18 H 1.07998 * 119.99804 * 152.43171 * 17 16 15 19 19 C 1.38813 * 120.00007 * 332.41924 * 17 16 15 20 20 N 1.31613 * 120.00344 * 342.17478 * 19 17 16 21 21 Si 1.86800 * 119.99546 * 162.16772 * 19 17 16 22 22 H 1.48501 * 109.47029 * 60.00763 * 21 19 17 23 23 H 1.48503 * 109.46924 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47232 * 300.00275 * 21 19 17 25 25 H 1.08999 * 109.46672 * 300.16122 * 1 2 3 26 26 H 1.08998 * 109.46690 * 60.15871 * 1 2 3 27 27 H 1.09001 * 109.46671 * 180.15914 * 1 2 3 28 28 H 1.09007 * 109.46720 * 60.00259 * 10 9 8 29 29 H 1.08993 * 109.47234 * 179.97438 * 10 9 8 30 30 H 1.09001 * 109.47329 * 300.00470 * 10 9 8 31 31 H 1.09000 * 109.47052 * 59.99965 * 11 9 8 32 32 H 1.09003 * 109.47481 * 179.97438 * 11 9 8 33 33 H 1.08995 * 109.47199 * 300.00362 * 11 9 8 34 34 H 1.09001 * 109.46966 * 59.99924 * 12 9 8 35 35 H 1.08994 * 109.46910 * 179.97438 * 12 9 8 36 36 H 1.09002 * 109.46692 * 300.00375 * 12 9 8 37 37 H 1.09004 * 109.46071 * 178.61162 * 13 4 2 38 38 H 1.09001 * 109.46254 * 58.65202 * 13 4 2 39 39 H 1.08996 * 109.50235 * 301.41943 * 14 13 4 40 40 H 1.09000 * 109.50064 * 181.31729 * 14 13 4 41 41 H 1.09001 * 109.58741 * 185.57906 * 15 14 13 42 42 H 1.08992 * 109.58784 * 65.15241 * 15 14 13 43 43 H 0.96993 * 120.00357 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 1 3.1297 -0.6504 -1.2919 6 6 1.4407 -0.1060 -2.4778 7 8 0.4275 -0.5626 -2.9519 8 8 2.0295 0.9567 -3.0489 9 6 1.3930 1.5056 -4.2329 10 6 -0.0262 1.9593 -3.8853 11 6 2.2013 2.7024 -4.7379 12 6 1.3330 0.4336 -5.3231 13 6 1.6415 -2.2041 -1.1701 14 6 2.2801 -2.8464 0.0635 15 6 1.7692 -2.1410 1.3238 16 7 2.0226 -0.6996 1.1945 17 6 2.7000 -0.0199 2.1714 18 1 3.2645 0.8659 1.9206 19 6 2.6609 -0.4695 3.4842 20 7 1.7227 -1.3107 3.8641 21 14 3.9400 0.1195 4.7115 22 1 3.8630 1.5973 4.8360 23 1 3.6803 -0.5032 6.0344 24 1 5.2938 -0.2677 4.2398 25 1 -0.3632 0.5163 0.8885 26 1 -0.3632 0.5114 -0.8914 27 1 -0.3633 -1.0277 0.0029 28 1 0.0166 2.7230 -3.1087 29 1 -0.5037 2.3717 -4.7740 30 1 -0.6023 1.1069 -3.5252 31 1 3.2125 2.3795 -4.9856 32 1 1.7238 3.1143 -5.6271 33 1 2.2437 3.4659 -3.9612 34 1 0.7569 -0.4189 -4.9631 35 1 0.8548 0.8455 -6.2117 36 1 2.3441 0.1103 -5.5708 37 1 1.9844 -2.7203 -2.0668 38 1 0.5565 -2.2815 -1.0992 39 1 3.3640 -2.7474 0.0053 40 1 2.0123 -3.9023 0.1037 41 1 2.2944 -2.5274 2.1972 42 1 0.6987 -2.3156 1.4317 43 1 1.6955 -1.6251 4.7812 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420923852.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:11 Heat of formation + Delta-G solvation = -95.192088 kcal Electronic energy + Delta-G solvation = -22448.822587 eV Core-core repulsion = 19300.679590 eV Total energy + Delta-G solvation = -3148.142997 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03906 -39.67621 -37.77040 -35.20003 -34.83985 -33.13906 -32.01296 -29.08737 -28.33277 -28.26470 -26.57076 -25.21518 -23.30951 -22.76011 -20.70110 -19.82236 -18.63080 -17.93440 -17.37672 -17.17482 -16.84384 -16.02386 -15.64833 -15.42638 -15.01797 -14.76463 -14.64082 -14.24298 -14.14637 -13.79137 -13.33103 -13.16077 -13.06288 -13.03867 -12.88409 -12.81590 -12.71910 -12.63227 -12.43661 -12.23996 -12.13598 -11.97792 -11.92326 -11.62326 -11.49030 -11.32520 -11.08687 -10.78012 -10.49106 -8.70724 -7.86293 -5.31641 1.24458 1.49954 1.51992 1.58546 1.75614 2.53190 3.28876 3.51233 3.75737 3.79306 3.82987 3.86233 3.97241 3.99731 4.26346 4.38322 4.47818 4.56780 4.62287 4.63137 4.71991 4.78626 4.81346 4.84578 4.86120 4.90142 4.95730 5.04995 5.11854 5.15300 5.20214 5.26598 5.29784 5.33803 5.40203 5.54892 5.59380 5.69069 5.79410 6.39470 6.90528 7.15394 7.84066 8.36826 9.19905 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.027551 B = 0.005286 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.047936 B = 5295.373955 C = 5731.574718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.181 3.819 3 H 0.062 0.938 4 C -0.088 4.088 5 H 0.100 0.900 6 C 0.483 3.517 7 O -0.517 6.517 8 O -0.360 6.360 9 C 0.101 3.899 10 C -0.181 4.181 11 C -0.136 4.136 12 C -0.178 4.178 13 C -0.087 4.087 14 C -0.130 4.130 15 C 0.173 3.827 16 N -0.593 5.593 17 C -0.266 4.266 18 H 0.068 0.932 19 C -0.043 4.043 20 N -0.931 5.931 21 Si 0.966 3.034 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.277 1.277 25 H 0.036 0.964 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.094 0.906 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.057 0.943 42 H -0.001 1.001 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.612 3.898 -17.241 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.073 3.927 3 H 0.080 0.920 4 C -0.109 4.109 5 H 0.118 0.882 6 C 0.327 3.673 7 O -0.406 6.406 8 O -0.277 6.277 9 C 0.065 3.935 10 C -0.238 4.238 11 C -0.193 4.193 12 C -0.235 4.235 13 C -0.125 4.125 14 C -0.169 4.169 15 C 0.048 3.952 16 N -0.315 5.315 17 C -0.396 4.396 18 H 0.086 0.914 19 C -0.239 4.239 20 N -0.576 5.576 21 Si 0.794 3.206 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.203 1.203 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.120 0.880 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.017 0.983 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.290 3.736 -17.241 17.643 hybrid contribution 0.188 0.146 1.098 1.123 sum 0.478 3.882 -16.143 16.610 Atomic orbital electron populations 1.22152 0.97762 1.01083 0.99763 1.20354 0.92271 0.94603 0.85483 0.91996 1.21563 1.02049 0.97094 0.90219 0.88207 1.23553 0.82112 0.77512 0.84159 1.90515 1.24602 1.62183 1.63288 1.86598 1.54470 1.43907 1.42743 1.22542 0.93557 0.94839 0.82532 1.22468 0.95736 1.02116 1.03466 1.21871 1.00423 0.94875 1.02139 1.22443 1.03059 0.99326 0.98637 1.21291 1.00974 0.91770 0.98431 1.22044 1.00303 0.99394 0.95135 1.20662 0.96083 0.82932 0.95542 1.44278 1.64248 1.04171 1.18824 1.19456 1.22315 1.10432 0.87405 0.91450 1.25735 0.99313 1.00521 0.98356 1.70187 1.32993 1.37348 1.17058 0.85375 0.79464 0.77938 0.77849 1.20267 1.22135 1.20298 0.94483 0.92951 0.93308 0.92367 0.88771 0.92102 0.91222 0.87959 0.91717 0.92006 0.88871 0.91738 0.90869 0.91947 0.92195 0.90453 0.92451 0.98269 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 8.57 71.98 0.62 -5.47 16 2 C 0.18 7.58 2.87 44.97 0.13 7.71 16 3 H 0.06 2.65 7.93 -2.39 -0.02 2.63 16 4 C -0.09 -3.13 2.56 -11.46 -0.03 -3.16 16 5 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 6 C 0.48 15.89 5.22 71.24 0.37 16.26 16 7 O -0.52 -17.79 10.92 21.97 0.24 -17.55 16 8 O -0.36 -10.81 9.89 -51.49 -0.51 -11.32 16 9 C 0.10 2.33 1.13 -10.79 -0.01 2.32 16 10 C -0.18 -4.16 8.37 71.98 0.60 -3.55 16 11 C -0.14 -2.29 8.85 71.98 0.64 -1.65 16 12 C -0.18 -3.73 8.37 71.99 0.60 -3.13 16 13 C -0.09 -2.97 4.48 30.62 0.14 -2.83 16 14 C -0.13 -4.79 6.08 30.67 0.19 -4.60 16 15 C 0.17 8.25 4.89 86.36 0.42 8.67 16 16 N -0.59 -29.30 2.70 -675.21 -1.82 -31.12 16 17 C -0.27 -14.43 9.58 84.03 0.81 -13.62 16 18 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 19 C -0.04 -2.38 4.90 84.86 0.42 -1.97 16 20 N -0.93 -54.33 11.22 21.65 0.24 -54.09 16 21 Si 0.97 44.32 29.59 68.60 2.03 46.35 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.05 1.94 6.71 -2.39 -0.02 1.93 16 27 H 0.05 2.04 5.72 -2.39 -0.01 2.03 16 28 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.72 5.89 -2.39 -0.01 1.70 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.06 1.61 5.89 -2.39 -0.01 1.59 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.06 2.26 6.27 -2.39 -0.01 2.24 16 39 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 41 H 0.06 3.08 6.06 -2.39 -0.01 3.06 16 42 H 0.00 -0.04 7.48 -2.39 -0.02 -0.06 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -62.06 327.38 6.03 -56.02 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.97 Total: 16.73 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: 4.89 Total: -5.03 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -1.58 Total: -85.21 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.27 Total: -28.87 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -62.06 6.03 -56.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420923852.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.168 kcal (2) G-P(sol) polarization free energy of solvation -62.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds