Wall clock time and date at job start Mon Mar 30 2020 01:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99766 * 2 1 4 4 C 1.52998 * 109.47064 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47303 * 65.00053 * 4 3 2 6 6 C 1.46501 * 119.99702 * 264.24221 * 5 4 3 7 7 C 1.50695 * 109.46976 * 275.39819 * 6 5 4 8 8 H 1.08001 * 120.00272 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00000 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00118 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99983 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47198 * 89.99955 * 11 9 7 13 13 H 1.48510 * 109.47251 * 210.00002 * 11 9 7 14 14 H 1.48501 * 109.47186 * 329.99581 * 11 9 7 15 15 C 1.34774 * 120.00047 * 84.24067 * 5 4 3 16 16 O 1.21283 * 120.00248 * 3.87364 * 15 5 4 17 17 C 1.50700 * 119.99891 * 183.88009 * 15 5 4 18 18 H 1.08999 * 110.43282 * 307.90154 * 17 15 5 19 19 C 1.54886 * 110.48967 * 70.44937 * 17 15 5 20 20 C 1.54888 * 102.74954 * 156.62292 * 19 17 15 21 21 C 1.54262 * 104.19388 * 322.05408 * 20 19 17 22 22 H 1.09004 * 110.03543 * 264.27811 * 21 20 19 23 23 C 1.53003 * 110.02961 * 142.89823 * 21 20 19 24 24 C 1.53876 * 106.59952 * 23.61351 * 21 20 19 25 25 H 1.09003 * 109.47632 * 299.99962 * 1 2 3 26 26 H 1.09000 * 109.47604 * 60.00662 * 1 2 3 27 27 H 1.09006 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47314 * 60.00098 * 3 2 1 29 29 H 1.08998 * 109.46882 * 300.00203 * 3 2 1 30 30 H 1.08994 * 109.47246 * 304.99458 * 4 3 2 31 31 H 1.09006 * 109.47079 * 184.99988 * 4 3 2 32 32 H 1.09001 * 109.47348 * 35.39913 * 6 5 4 33 33 H 1.09003 * 109.46840 * 155.40224 * 6 5 4 34 34 H 0.96994 * 120.00002 * 179.97438 * 10 9 7 35 35 H 1.08998 * 110.75770 * 38.30142 * 19 17 15 36 36 H 1.09008 * 110.75342 * 274.93438 * 19 17 15 37 37 H 1.09002 * 110.48170 * 203.37624 * 20 19 17 38 38 H 1.08995 * 110.60140 * 80.79223 * 20 19 17 39 39 H 1.08991 * 109.47179 * 61.45547 * 23 21 20 40 40 H 1.09001 * 109.47080 * 301.45069 * 23 21 20 41 41 H 1.09001 * 109.47120 * 181.45438 * 23 21 20 42 42 H 1.08998 * 110.03208 * 119.28762 * 24 21 20 43 43 H 1.09001 * 110.02815 * 240.71117 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2278 -0.8782 -1.3044 7 6 5.6290 -1.1621 -0.8280 8 1 6.2684 -0.3495 -0.5161 9 6 6.0947 -2.4593 -0.7903 10 7 7.3175 -2.7071 -0.3740 11 14 4.9892 -3.8647 -1.3304 12 1 5.1692 -4.1054 -2.7847 13 1 5.3470 -5.0936 -0.5772 14 1 3.5723 -3.5126 -1.0586 15 6 4.1515 1.3200 -2.3529 16 8 4.0119 2.5232 -2.2915 17 6 4.5205 0.6701 -3.6616 18 1 5.3897 0.0249 -3.5343 19 6 3.3235 -0.1372 -4.2225 20 6 3.6325 -0.1975 -5.7390 21 6 4.2278 1.1892 -6.0592 22 1 3.4494 1.8512 -6.4387 23 6 5.3486 1.0526 -7.0918 24 6 4.7925 1.7408 -4.7383 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6885 1.8465 0.8900 29 1 1.6884 1.8464 -0.8900 30 1 3.8507 0.5687 0.8427 31 1 3.9783 2.1767 0.0902 32 1 3.5141 -1.3954 -0.6630 33 1 4.1148 -1.2288 -2.3303 34 1 7.6450 -3.6197 -0.3471 35 1 2.3850 0.3863 -4.0399 36 1 3.2981 -1.1389 -3.7933 37 1 2.7175 -0.3606 -6.3085 38 1 4.3581 -0.9825 -5.9516 39 1 4.9434 0.6386 -8.0150 40 1 6.1210 0.3885 -6.7040 41 1 5.7797 2.0335 -7.2920 42 1 5.8649 1.9113 -4.8329 43 1 4.2879 2.6707 -4.4761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611453906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:45 Heat of formation + Delta-G solvation = -98.963837 kcal Electronic energy + Delta-G solvation = -22159.930771 eV Core-core repulsion = 19011.624219 eV Total energy + Delta-G solvation = -3148.306552 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.75948 -37.81813 -36.99070 -34.99194 -32.52937 -31.46749 -29.78563 -28.51984 -27.51813 -26.12359 -25.02933 -22.76133 -22.44600 -20.72175 -19.50733 -18.01204 -16.96576 -16.89220 -16.01419 -15.94940 -15.26271 -15.01131 -14.58766 -14.24571 -14.01927 -13.86137 -13.24364 -13.04013 -12.76840 -12.54757 -12.15775 -12.09063 -11.90270 -11.62955 -11.51295 -11.28542 -10.96396 -10.83371 -10.69570 -10.61337 -10.48139 -10.46612 -10.31921 -10.17402 -10.03556 -9.53972 -9.47200 -8.95509 -8.63684 -7.67544 -6.15105 -4.15309 3.22368 3.31172 3.34413 3.36841 3.86116 4.08323 4.33593 4.83966 4.84488 4.99646 5.16449 5.31078 5.34775 5.43770 5.53188 5.58904 5.59558 5.63962 5.68227 5.71918 5.74620 5.82750 5.88679 5.93825 6.05519 6.07478 6.17655 6.20807 6.29503 6.30143 6.36537 6.53178 6.63344 6.65693 6.76347 6.93580 7.37527 7.43888 7.56044 8.20849 8.50424 8.88237 8.98828 9.45241 10.97786 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.008745 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.797089 B = 3201.135363 C = 4532.126015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.122 3.878 5 N -0.580 5.580 6 C 0.205 3.795 7 C -0.539 4.539 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.894 5.894 11 Si 0.867 3.133 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.525 3.475 16 O -0.576 6.576 17 C -0.110 4.110 18 H 0.110 0.890 19 C -0.112 4.112 20 C -0.119 4.119 21 C -0.096 4.096 22 H 0.067 0.933 23 C -0.144 4.144 24 C -0.108 4.108 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.736 4.703 -6.875 13.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.002 4.002 5 N -0.309 5.309 6 C 0.084 3.916 7 C -0.577 4.577 8 H 0.094 0.906 9 C -0.127 4.127 10 N -0.532 5.532 11 Si 0.694 3.306 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.313 3.687 16 O -0.457 6.457 17 C -0.131 4.131 18 H 0.128 0.872 19 C -0.150 4.150 20 C -0.156 4.156 21 C -0.115 4.115 22 H 0.086 0.914 23 C -0.201 4.201 24 C -0.145 4.145 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.556 4.981 -6.783 13.500 hybrid contribution -0.583 -0.752 -0.082 0.955 sum -11.139 4.229 -6.865 13.751 Atomic orbital electron populations 1.22681 0.82159 1.02280 0.99337 1.88012 1.18680 1.27845 1.95251 1.23052 0.95378 0.84663 0.99889 1.21328 0.90717 0.99797 0.88327 1.47789 1.64248 1.10290 1.08596 1.19994 0.97401 0.76109 0.98123 1.21435 0.97168 0.94323 1.44812 0.90582 1.24851 0.94839 0.98482 0.94567 1.69900 1.16057 1.20587 1.46667 0.86970 0.82037 0.82379 0.79263 1.19864 1.21002 1.18446 1.20409 0.75983 0.86540 0.85738 1.90554 1.54276 1.14851 1.86043 1.22071 1.00608 0.98213 0.92249 0.87235 1.22519 0.97058 1.00331 0.95089 1.22448 1.00372 0.97063 0.95753 1.21744 0.97428 0.96703 0.95584 0.91426 1.21890 0.98428 1.01498 0.98323 1.22152 1.01217 0.98782 0.92389 0.94576 0.94610 0.90001 0.93096 0.93290 0.89126 0.89509 0.94102 0.94508 0.92497 0.91683 0.90412 0.91960 0.91205 0.93137 0.92351 0.92931 0.91683 0.90175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.38 -6.47 10.09 -35.23 -0.36 -6.83 16 3 C 0.05 0.77 6.24 37.16 0.23 1.00 16 4 C 0.12 2.28 5.79 -4.04 -0.02 2.26 16 5 N -0.58 -12.22 2.42 -175.06 -0.42 -12.65 16 6 C 0.20 4.68 3.89 -5.20 -0.02 4.66 16 7 C -0.54 -14.55 9.93 -34.44 -0.34 -14.90 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 10 N -0.89 -26.43 13.96 55.43 0.77 -25.66 16 11 Si 0.87 20.27 27.47 -169.99 -4.67 15.60 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 15 C 0.52 10.88 6.94 -10.99 -0.08 10.80 16 16 O -0.58 -12.76 15.05 5.56 0.08 -12.68 16 17 C -0.11 -2.00 2.27 -90.11 -0.20 -2.21 16 18 H 0.11 2.18 7.69 -51.93 -0.40 1.78 16 19 C -0.11 -1.78 5.78 -24.74 -0.14 -1.92 16 20 C -0.12 -1.58 6.36 -25.07 -0.16 -1.74 16 21 C -0.10 -1.26 3.50 -89.50 -0.31 -1.57 16 22 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 23 C -0.14 -1.66 8.84 37.16 0.33 -1.33 16 24 C -0.11 -1.71 5.88 -25.61 -0.15 -1.86 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.73 8.03 -51.93 -0.42 1.32 16 31 H 0.09 1.58 7.55 -51.93 -0.39 1.19 16 32 H 0.04 0.97 6.64 -51.93 -0.35 0.62 16 33 H 0.04 0.81 3.62 -51.93 -0.19 0.62 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 1.02 8.05 -51.93 -0.42 0.60 16 36 H 0.08 1.29 6.21 -51.92 -0.32 0.96 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.01 7.67 -51.93 -0.40 0.62 16 43 H 0.08 1.37 6.79 -51.93 -0.35 1.02 16 LS Contribution 339.51 15.07 5.12 5.12 Total: -1.00 -30.68 339.51 -6.79 -37.47 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.46 Total: 2.92 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.14 Total: -3.29 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.35 Total: -38.31 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.27 Total: -19.51 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.67 Total: 15.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.68 -6.79 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611453906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.494 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds