Wall clock time and date at job start Mon Mar 30 2020 01:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99766 * 2 1 4 4 C 1.52998 * 109.47064 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47303 * 65.00053 * 4 3 2 6 6 C 1.46501 * 119.99702 * 264.24221 * 5 4 3 7 7 C 1.50695 * 109.46976 * 275.39819 * 6 5 4 8 8 H 1.08001 * 120.00272 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00000 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00118 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 119.99983 * 0.02562 * 9 7 6 12 12 H 1.48501 * 109.47198 * 89.99955 * 11 9 7 13 13 H 1.48510 * 109.47251 * 210.00002 * 11 9 7 14 14 H 1.48501 * 109.47186 * 329.99581 * 11 9 7 15 15 C 1.34774 * 120.00047 * 84.24067 * 5 4 3 16 16 O 1.21283 * 120.00248 * 3.87364 * 15 5 4 17 17 C 1.50700 * 119.99891 * 183.88009 * 15 5 4 18 18 H 1.08999 * 110.43282 * 307.90154 * 17 15 5 19 19 C 1.54886 * 110.48967 * 70.44937 * 17 15 5 20 20 C 1.54888 * 102.74954 * 156.62292 * 19 17 15 21 21 C 1.54262 * 104.19388 * 322.05408 * 20 19 17 22 22 H 1.09004 * 110.03543 * 264.27811 * 21 20 19 23 23 C 1.53003 * 110.02961 * 142.89823 * 21 20 19 24 24 C 1.53876 * 106.59952 * 23.61351 * 21 20 19 25 25 H 1.09003 * 109.47632 * 299.99962 * 1 2 3 26 26 H 1.09000 * 109.47604 * 60.00662 * 1 2 3 27 27 H 1.09006 * 109.47109 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47314 * 60.00098 * 3 2 1 29 29 H 1.08998 * 109.46882 * 300.00203 * 3 2 1 30 30 H 1.08994 * 109.47246 * 304.99458 * 4 3 2 31 31 H 1.09006 * 109.47079 * 184.99988 * 4 3 2 32 32 H 1.09001 * 109.47348 * 35.39913 * 6 5 4 33 33 H 1.09003 * 109.46840 * 155.40224 * 6 5 4 34 34 H 0.96994 * 120.00002 * 179.97438 * 10 9 7 35 35 H 1.08998 * 110.75770 * 38.30142 * 19 17 15 36 36 H 1.09008 * 110.75342 * 274.93438 * 19 17 15 37 37 H 1.09002 * 110.48170 * 203.37624 * 20 19 17 38 38 H 1.08995 * 110.60140 * 80.79223 * 20 19 17 39 39 H 1.08991 * 109.47179 * 61.45547 * 23 21 20 40 40 H 1.09001 * 109.47080 * 301.45069 * 23 21 20 41 41 H 1.09001 * 109.47120 * 181.45438 * 23 21 20 42 42 H 1.08998 * 110.03208 * 119.28762 * 24 21 20 43 43 H 1.09001 * 110.02815 * 240.71117 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2278 -0.8782 -1.3044 7 6 5.6290 -1.1621 -0.8280 8 1 6.2684 -0.3495 -0.5161 9 6 6.0947 -2.4593 -0.7903 10 7 7.3175 -2.7071 -0.3740 11 14 4.9892 -3.8647 -1.3304 12 1 5.1692 -4.1054 -2.7847 13 1 5.3470 -5.0936 -0.5772 14 1 3.5723 -3.5126 -1.0586 15 6 4.1515 1.3200 -2.3529 16 8 4.0119 2.5232 -2.2915 17 6 4.5205 0.6701 -3.6616 18 1 5.3897 0.0249 -3.5343 19 6 3.3235 -0.1372 -4.2225 20 6 3.6325 -0.1975 -5.7390 21 6 4.2278 1.1892 -6.0592 22 1 3.4494 1.8512 -6.4387 23 6 5.3486 1.0526 -7.0918 24 6 4.7925 1.7408 -4.7383 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.6885 1.8465 0.8900 29 1 1.6884 1.8464 -0.8900 30 1 3.8507 0.5687 0.8427 31 1 3.9783 2.1767 0.0902 32 1 3.5141 -1.3954 -0.6630 33 1 4.1148 -1.2288 -2.3303 34 1 7.6450 -3.6197 -0.3471 35 1 2.3850 0.3863 -4.0399 36 1 3.2981 -1.1389 -3.7933 37 1 2.7175 -0.3606 -6.3085 38 1 4.3581 -0.9825 -5.9516 39 1 4.9434 0.6386 -8.0150 40 1 6.1210 0.3885 -6.7040 41 1 5.7797 2.0335 -7.2920 42 1 5.8649 1.9113 -4.8329 43 1 4.2879 2.6707 -4.4761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611453906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:44 Heat of formation + Delta-G solvation = -117.684047 kcal Electronic energy + Delta-G solvation = -22160.742540 eV Core-core repulsion = 19011.624219 eV Total energy + Delta-G solvation = -3149.118321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.30678 -39.06044 -38.29734 -36.72598 -34.57875 -32.73818 -31.22495 -29.83688 -29.26656 -27.23649 -26.18252 -24.50083 -23.99275 -22.09184 -20.67445 -19.56397 -19.05028 -18.39653 -17.53104 -17.19760 -16.63395 -16.39173 -16.19768 -15.55799 -15.52739 -15.30639 -14.62997 -14.36744 -14.23360 -13.93759 -13.76915 -13.55895 -13.16747 -12.97206 -12.79713 -12.76790 -12.53109 -12.43728 -12.07047 -12.02815 -11.94191 -11.74889 -11.62566 -11.56871 -11.50556 -11.22010 -10.78355 -10.71824 -10.49549 -9.41812 -8.29902 -6.36370 1.38629 1.41317 1.52405 1.72288 2.28296 2.35348 2.89197 3.04632 3.56644 3.63811 3.78769 4.06071 4.11582 4.24622 4.35849 4.42726 4.45364 4.53271 4.54050 4.55896 4.60979 4.64057 4.67481 4.76125 4.80529 4.83709 4.87468 4.97062 5.00796 5.06772 5.14635 5.20098 5.31617 5.35961 5.40483 5.48331 5.60790 5.73143 6.17173 6.26230 6.64277 6.70275 7.23749 7.35110 8.86660 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.008745 C = 0.006177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.797089 B = 3201.135363 C = 4532.126015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.409 6.409 3 C 0.061 3.939 4 C 0.114 3.886 5 N -0.587 5.587 6 C 0.221 3.779 7 C -0.543 4.543 8 H 0.027 0.973 9 C 0.019 3.981 10 N -0.943 5.943 11 Si 0.937 3.063 12 H -0.255 1.255 13 H -0.284 1.284 14 H -0.242 1.242 15 C 0.517 3.483 16 O -0.594 6.594 17 C -0.115 4.115 18 H 0.087 0.913 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.091 4.091 22 H 0.082 0.918 23 C -0.142 4.142 24 C -0.105 4.105 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.268 0.732 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.264 3.885 -8.650 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.329 6.329 3 C -0.017 4.017 4 C -0.009 4.009 5 N -0.316 5.316 6 C 0.099 3.901 7 C -0.581 4.581 8 H 0.045 0.955 9 C -0.180 4.180 10 N -0.583 5.583 11 Si 0.759 3.241 12 H -0.180 1.180 13 H -0.210 1.210 14 H -0.165 1.165 15 C 0.307 3.693 16 O -0.477 6.477 17 C -0.136 4.136 18 H 0.105 0.895 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.109 4.109 22 H 0.100 0.900 23 C -0.199 4.199 24 C -0.143 4.143 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.104 4.186 -8.558 16.201 hybrid contribution 0.265 -0.394 0.566 0.739 sum -12.839 3.792 -7.992 15.592 Atomic orbital electron populations 1.22902 0.79775 1.03590 1.00675 1.87950 1.21312 1.28090 1.95510 1.22858 0.93002 0.84852 1.00978 1.21473 0.93191 0.99168 0.87117 1.47860 1.64400 1.09743 1.09594 1.19712 0.94476 0.77336 0.98546 1.21586 0.98626 0.93241 1.44674 0.95499 1.25772 0.96276 1.01495 0.94407 1.70058 1.18385 1.21475 1.48387 0.85868 0.80541 0.78100 0.79623 1.17963 1.20960 1.16484 1.20917 0.75438 0.86433 0.86488 1.90531 1.55131 1.15537 1.86456 1.22128 1.00881 0.98881 0.91709 0.89485 1.22514 0.95893 0.99298 0.96970 1.22454 1.01667 0.97064 0.93791 1.21733 0.98221 0.96771 0.94173 0.89979 1.21868 0.97661 1.01827 0.98545 1.22145 1.01054 0.97593 0.93462 0.92663 0.93801 0.88785 0.90134 0.93866 0.90269 0.89755 0.94167 0.92897 0.92284 0.91364 0.91020 0.89313 0.90988 0.91113 0.93297 0.92399 0.92108 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -13.27 10.09 -148.98 -1.50 -14.77 16 3 C 0.06 1.89 6.24 71.98 0.45 2.33 16 4 C 0.11 4.33 5.79 86.38 0.50 4.83 16 5 N -0.59 -25.15 2.42 -826.16 -2.00 -27.15 16 6 C 0.22 10.14 3.89 85.63 0.33 10.47 16 7 C -0.54 -30.30 9.93 25.60 0.25 -30.04 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 9 C 0.02 1.07 5.47 84.65 0.46 1.53 16 10 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 11 Si 0.94 41.27 27.47 68.60 1.88 43.15 16 12 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 14 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 15 C 0.52 21.79 6.94 87.66 0.61 22.39 16 16 O -0.59 -26.74 15.05 -3.04 -0.05 -26.78 16 17 C -0.11 -4.17 2.27 -10.47 -0.02 -4.19 16 18 H 0.09 3.55 7.69 -2.39 -0.02 3.53 16 19 C -0.11 -3.26 5.78 31.88 0.18 -3.08 16 20 C -0.11 -2.64 6.36 31.67 0.20 -2.44 16 21 C -0.09 -2.15 3.50 -10.07 -0.04 -2.19 16 22 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 23 C -0.14 -2.91 8.84 71.98 0.64 -2.27 16 24 C -0.10 -3.28 5.88 31.32 0.18 -3.09 16 25 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 3.14 8.03 -2.39 -0.02 3.12 16 31 H 0.08 3.18 7.55 -2.38 -0.02 3.17 16 32 H 0.04 1.87 6.64 -2.39 -0.02 1.85 16 33 H 0.05 2.28 3.62 -2.39 -0.01 2.27 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.07 2.00 8.05 -2.39 -0.02 1.98 16 36 H 0.07 2.22 6.21 -2.38 -0.01 2.20 16 37 H 0.09 1.66 8.14 -2.39 -0.02 1.65 16 38 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 39 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.06 1.91 7.67 -2.39 -0.02 1.89 16 43 H 0.07 2.26 6.79 -2.39 -0.02 2.25 16 Total: -1.00 -68.01 339.51 4.55 -63.46 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.91 Total: 23.07 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.00 Total: -3.90 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -1.70 Total: -84.23 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.55 Total: -41.56 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.88 Total: 43.15 kcal Total: -68.01 4.55 -63.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611453906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.225 kcal (2) G-P(sol) polarization free energy of solvation -68.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds