Wall clock time and date at job start Mon Mar 30 2020 02:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.53007 * 109.47020 * 119.99643 * 2 1 3 5 5 C 1.50700 * 109.47118 * 295.00152 * 4 2 1 6 6 H 1.07996 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00063 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00284 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46714 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47196 * 119.99735 * 9 7 5 12 12 H 1.48500 * 109.47074 * 239.99861 * 9 7 5 13 13 C 1.53002 * 109.47420 * 239.99577 * 2 1 3 14 14 N 1.46900 * 109.46765 * 65.00085 * 13 2 1 15 15 C 1.46902 * 110.99722 * 180.02562 * 14 13 2 16 16 C 1.52997 * 110.32927 * 59.29951 * 15 14 13 17 17 C 1.54497 * 110.45993 * 181.60382 * 15 14 13 18 18 C 1.54563 * 102.14895 * 103.53478 * 17 15 14 19 19 C 1.52998 * 110.44227 * 268.10952 * 18 17 15 20 20 C 1.52997 * 110.54764 * 145.63901 * 18 17 15 21 21 O 1.45842 * 104.44033 * 26.84985 * 18 17 15 22 22 C 1.34060 * 109.90434 * 329.39324 * 21 18 17 23 23 O 1.20832 * 125.09057 * 200.83084 * 22 21 18 24 24 H 1.09008 * 109.46854 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47026 * 300.00286 * 1 2 3 26 26 H 1.08996 * 109.46884 * 60.00318 * 1 2 3 27 27 H 1.09004 * 109.46702 * 55.00229 * 4 2 1 28 28 H 1.09002 * 109.47018 * 174.99889 * 4 2 1 29 29 H 0.97001 * 119.99798 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47097 * 305.00327 * 13 2 1 31 31 H 1.08997 * 109.47247 * 184.99700 * 13 2 1 32 32 H 1.00901 * 110.99876 * 56.04421 * 14 13 2 33 33 H 1.09002 * 109.47153 * 299.21130 * 16 15 14 34 34 H 1.09001 * 109.46832 * 179.21321 * 16 15 14 35 35 H 1.09004 * 109.47261 * 59.21303 * 16 15 14 36 36 H 1.09004 * 110.86760 * 221.70227 * 17 15 14 37 37 H 1.09006 * 110.86793 * 345.37174 * 17 15 14 38 38 H 1.09002 * 109.47181 * 176.47125 * 19 18 17 39 39 H 1.08991 * 109.47290 * 296.47160 * 19 18 17 40 40 H 1.09003 * 109.47219 * 56.47461 * 19 18 17 41 41 H 1.09003 * 109.47151 * 303.46759 * 20 18 17 42 42 H 1.08998 * 109.46893 * 63.46213 * 20 18 17 43 43 H 1.09003 * 109.47429 * 183.46703 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5186 3.8513 9 14 1.4983 0.5629 5.2497 10 1 0.7410 1.7739 4.8434 11 1 0.6450 -0.2868 6.1186 12 1 2.7162 0.9686 5.9964 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1249 -0.6273 -3.6671 16 6 1.5400 -2.0377 -3.7657 17 6 1.7446 0.2009 -4.9146 18 6 3.0904 0.8628 -5.2883 19 6 3.2182 2.2309 -4.6155 20 6 3.2173 1.0015 -6.8067 21 8 4.1016 -0.0539 -4.7745 22 6 3.6370 -0.6817 -3.6848 23 8 4.3230 -1.2117 -2.8430 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 2.9242 -1.8410 4.7319 30 1 1.6054 -1.7199 -1.2951 31 1 3.1264 -0.7995 -1.2055 32 1 1.9882 0.9872 -2.3966 33 1 1.8631 -2.6258 -2.9067 34 1 1.8888 -2.5123 -4.6829 35 1 0.4516 -1.9796 -3.7777 36 1 1.3938 -0.4465 -5.7184 37 1 0.9968 0.9545 -4.6672 38 1 4.1970 2.6555 -4.8383 39 1 2.4400 2.8949 -4.9917 40 1 3.1086 2.1171 -3.5370 41 1 3.1071 0.0217 -7.2716 42 1 2.4390 1.6688 -7.1769 43 1 4.1962 1.4127 -7.0535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001183738109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:51 Heat of formation + Delta-G solvation = -100.901556 kcal Electronic energy + Delta-G solvation = -21787.527042 eV Core-core repulsion = 18639.136464 eV Total energy + Delta-G solvation = -3148.390578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.63580 -37.94000 -36.97720 -34.78742 -33.53887 -32.25694 -30.19064 -27.97810 -27.31536 -26.74237 -25.10838 -23.83653 -22.42212 -21.56048 -19.42224 -19.12530 -16.90190 -16.84593 -16.37036 -16.20168 -15.19125 -14.80000 -14.51896 -14.36450 -13.99717 -13.64661 -13.58513 -13.00021 -12.72528 -12.68064 -12.36122 -12.31878 -12.25649 -12.05575 -11.85707 -11.75473 -11.51147 -11.33370 -11.06510 -10.85561 -10.75679 -10.66322 -10.38803 -10.25269 -10.21175 -9.66661 -9.12844 -8.91308 -8.29132 -8.18468 -5.93273 -3.94692 2.00385 3.02969 3.34498 3.41830 3.45604 3.74451 4.02539 4.13556 4.27346 4.42161 4.51603 4.57211 4.91867 5.16430 5.25965 5.32165 5.35237 5.42251 5.45872 5.49973 5.54626 5.64789 5.71876 5.75460 5.80555 5.93723 6.06416 6.20889 6.43055 6.53853 6.65096 6.71590 6.94713 7.13519 7.16158 7.25793 7.36748 7.54261 7.75369 7.90115 8.07136 8.50114 9.11957 9.68423 11.18258 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.004020 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.319988 B = 6964.151622 C = 7024.732657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.081 4.081 3 H 0.051 0.949 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.045 3.955 14 N -0.650 5.650 15 C 0.059 3.941 16 C -0.132 4.132 17 C -0.138 4.138 18 C 0.100 3.900 19 C -0.167 4.167 20 C -0.141 4.141 21 O -0.347 6.347 22 C 0.446 3.554 23 O -0.439 6.439 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.040 0.960 27 H 0.017 0.983 28 H 0.014 0.986 29 H 0.259 0.741 30 H 0.074 0.926 31 H 0.050 0.950 32 H 0.338 0.662 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.873 5.190 -22.742 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.100 4.100 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.083 4.083 14 N -0.284 5.284 15 C -0.034 4.034 16 C -0.189 4.189 17 C -0.176 4.176 18 C 0.063 3.937 19 C -0.224 4.224 20 C -0.198 4.198 21 O -0.264 6.264 22 C 0.283 3.717 23 O -0.320 6.320 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.059 0.941 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.100 0.900 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.878 4.514 -22.339 22.971 hybrid contribution 0.779 0.646 1.083 1.482 sum -2.100 5.160 -21.255 21.973 Atomic orbital electron populations 1.21604 0.95699 1.00622 1.00088 1.21200 0.95913 0.98792 0.94053 0.93014 1.19115 0.96113 0.95547 0.90231 1.21261 1.34531 1.08277 0.90975 0.92547 1.25028 0.95367 0.95101 0.99087 1.69988 1.39062 1.21235 1.23227 0.86579 0.78222 0.80107 0.83349 1.19777 1.21091 1.21137 1.22530 0.99572 0.97874 0.88334 1.61006 1.61332 1.05437 1.00602 1.22345 0.89603 0.98227 0.93270 1.21764 1.02263 0.92268 1.02618 1.23196 0.96995 1.00557 0.96836 1.23121 0.85773 0.89060 0.95771 1.22287 1.03869 0.94989 1.01245 1.21848 1.03502 1.03323 0.91119 1.87055 1.44480 1.53340 1.41482 1.24528 0.92122 0.75946 0.79081 1.90735 1.66472 1.40913 1.33842 0.94072 0.92718 0.94054 0.96502 0.96778 0.93162 0.90742 0.93159 0.84298 0.90920 0.92054 0.90090 0.88591 0.87382 0.90949 0.89756 0.91852 0.91290 0.89968 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.36 8.89 37.16 0.33 -2.03 16 2 C -0.08 -1.68 2.48 -90.61 -0.22 -1.91 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 5 C -0.51 -14.63 8.41 -34.44 -0.29 -14.92 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.60 13.29 55.43 0.74 -26.87 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 C 0.04 0.81 4.34 -3.82 -0.02 0.79 16 14 N -0.65 -9.15 5.54 -100.03 -0.55 -9.70 16 15 C 0.06 0.73 0.89 -131.66 -0.12 0.61 16 16 C -0.13 -1.53 8.15 37.16 0.30 -1.22 16 17 C -0.14 -1.16 5.51 -25.12 -0.14 -1.29 16 18 C 0.10 0.88 1.24 -89.80 -0.11 0.77 16 19 C -0.17 -1.34 8.77 37.16 0.33 -1.01 16 20 C -0.14 -0.86 8.92 37.16 0.33 -0.53 16 21 O -0.35 -4.64 10.48 -38.46 -0.40 -5.04 16 22 C 0.45 6.85 7.08 36.31 0.26 7.11 16 23 O -0.44 -8.60 15.62 -18.42 -0.29 -8.88 16 24 H 0.04 0.79 8.14 -51.92 -0.42 0.36 16 25 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 26 H 0.04 0.68 7.75 -51.93 -0.40 0.28 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 30 H 0.07 1.37 6.38 -51.93 -0.33 1.04 16 31 H 0.05 1.04 5.73 -51.93 -0.30 0.74 16 32 H 0.34 4.51 7.05 -39.29 -0.28 4.24 16 33 H 0.07 0.99 6.52 -51.93 -0.34 0.66 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 0.64 7.59 -51.93 -0.39 0.24 16 37 H 0.11 0.79 7.79 -51.93 -0.40 0.39 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.61 6.41 -51.93 -0.33 0.27 16 41 H 0.07 0.41 8.13 -51.93 -0.42 -0.01 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -33.24 337.45 -7.31 -40.55 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.29 Total: -0.64 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 0.43 Total: -11.52 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.18 Total: -36.57 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.69 Total: -13.93 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.24 -7.31 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183738109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.347 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds