Wall clock time and date at job start Mon Mar 30 2020 02:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47433 * 2 1 4 4 C 1.53007 * 109.47020 * 119.99643 * 2 1 3 5 5 C 1.50700 * 109.47118 * 295.00152 * 4 2 1 6 6 H 1.07996 * 120.00154 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00063 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99842 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00284 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46714 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47196 * 119.99735 * 9 7 5 12 12 H 1.48500 * 109.47074 * 239.99861 * 9 7 5 13 13 C 1.53002 * 109.47420 * 239.99577 * 2 1 3 14 14 N 1.46900 * 109.46765 * 65.00085 * 13 2 1 15 15 C 1.46902 * 110.99722 * 180.02562 * 14 13 2 16 16 C 1.52997 * 110.32927 * 59.29951 * 15 14 13 17 17 C 1.54497 * 110.45993 * 181.60382 * 15 14 13 18 18 C 1.54563 * 102.14895 * 103.53478 * 17 15 14 19 19 C 1.52998 * 110.44227 * 268.10952 * 18 17 15 20 20 C 1.52997 * 110.54764 * 145.63901 * 18 17 15 21 21 O 1.45842 * 104.44033 * 26.84985 * 18 17 15 22 22 C 1.34060 * 109.90434 * 329.39324 * 21 18 17 23 23 O 1.20832 * 125.09057 * 200.83084 * 22 21 18 24 24 H 1.09008 * 109.46854 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47026 * 300.00286 * 1 2 3 26 26 H 1.08996 * 109.46884 * 60.00318 * 1 2 3 27 27 H 1.09004 * 109.46702 * 55.00229 * 4 2 1 28 28 H 1.09002 * 109.47018 * 174.99889 * 4 2 1 29 29 H 0.97001 * 119.99798 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.47097 * 305.00327 * 13 2 1 31 31 H 1.08997 * 109.47247 * 184.99700 * 13 2 1 32 32 H 1.00901 * 110.99876 * 56.04421 * 14 13 2 33 33 H 1.09002 * 109.47153 * 299.21130 * 16 15 14 34 34 H 1.09001 * 109.46832 * 179.21321 * 16 15 14 35 35 H 1.09004 * 109.47261 * 59.21303 * 16 15 14 36 36 H 1.09004 * 110.86760 * 221.70227 * 17 15 14 37 37 H 1.09006 * 110.86793 * 345.37174 * 17 15 14 38 38 H 1.09002 * 109.47181 * 176.47125 * 19 18 17 39 39 H 1.08991 * 109.47290 * 296.47160 * 19 18 17 40 40 H 1.09003 * 109.47219 * 56.47461 * 19 18 17 41 41 H 1.09003 * 109.47151 * 303.46759 * 20 18 17 42 42 H 1.08998 * 109.46893 * 63.46213 * 20 18 17 43 43 H 1.09003 * 109.47429 * 183.46703 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6764 -1.5186 3.8513 9 14 1.4983 0.5629 5.2497 10 1 0.7410 1.7739 4.8434 11 1 0.6450 -0.2868 6.1186 12 1 2.7162 0.9686 5.9964 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0373 -2.4456 15 6 2.1249 -0.6273 -3.6671 16 6 1.5400 -2.0377 -3.7657 17 6 1.7446 0.2009 -4.9146 18 6 3.0904 0.8628 -5.2883 19 6 3.2182 2.2309 -4.6155 20 6 3.2173 1.0015 -6.8067 21 8 4.1016 -0.0539 -4.7745 22 6 3.6370 -0.6817 -3.6848 23 8 4.3230 -1.2117 -2.8430 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7994 1.2057 29 1 2.9242 -1.8410 4.7319 30 1 1.6054 -1.7199 -1.2951 31 1 3.1264 -0.7995 -1.2055 32 1 1.9882 0.9872 -2.3966 33 1 1.8631 -2.6258 -2.9067 34 1 1.8888 -2.5123 -4.6829 35 1 0.4516 -1.9796 -3.7777 36 1 1.3938 -0.4465 -5.7184 37 1 0.9968 0.9545 -4.6672 38 1 4.1970 2.6555 -4.8383 39 1 2.4400 2.8949 -4.9917 40 1 3.1086 2.1171 -3.5370 41 1 3.1071 0.0217 -7.2716 42 1 2.4390 1.6688 -7.1769 43 1 4.1962 1.4127 -7.0535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183738109.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:50 Heat of formation + Delta-G solvation = -122.663573 kcal Electronic energy + Delta-G solvation = -21788.470714 eV Core-core repulsion = 18639.136464 eV Total energy + Delta-G solvation = -3149.334250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.64731 -39.10803 -38.38417 -36.31712 -34.59221 -34.06453 -31.51404 -28.86378 -28.49392 -28.08259 -26.60723 -25.01111 -24.27165 -22.43322 -20.84844 -20.39148 -18.51844 -18.02405 -17.88444 -17.37112 -16.57956 -16.23848 -15.78182 -15.74896 -15.14018 -14.83043 -14.54221 -14.30413 -14.20426 -13.72445 -13.41255 -13.38980 -13.22745 -13.12863 -13.04544 -12.79378 -12.78783 -12.69392 -12.59689 -12.45252 -12.20032 -12.06611 -11.95607 -11.62359 -11.48602 -11.32103 -11.10755 -10.92745 -10.56402 -9.47604 -8.18481 -6.28980 0.84545 1.39116 1.39822 1.53200 2.11195 2.40878 2.71529 3.04146 3.14722 3.25315 3.58517 3.70638 3.87305 4.09238 4.12826 4.30918 4.50031 4.58881 4.63836 4.66137 4.71181 4.76950 4.82061 4.85806 4.88059 4.95186 4.98989 5.05326 5.14485 5.15973 5.28064 5.29073 5.44325 5.51327 5.52635 5.71200 5.79232 5.80800 5.85992 6.14084 6.26777 6.37104 6.87559 7.39765 8.94249 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032091 B = 0.004020 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.319988 B = 6964.151622 C = 7024.732657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.066 0.934 7 C -0.006 4.006 8 N -0.938 5.938 9 Si 0.966 3.034 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.062 3.938 14 N -0.634 5.634 15 C 0.058 3.942 16 C -0.132 4.132 17 C -0.124 4.124 18 C 0.090 3.910 19 C -0.169 4.169 20 C -0.137 4.137 21 O -0.363 6.363 22 C 0.442 3.558 23 O -0.498 6.498 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.076 0.924 27 H -0.011 1.011 28 H -0.026 1.026 29 H 0.262 0.738 30 H 0.069 0.931 31 H 0.019 0.981 32 H 0.344 0.656 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 7.338 -24.790 26.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.565 4.565 6 H 0.084 0.916 7 C -0.203 4.203 8 N -0.579 5.579 9 Si 0.791 3.209 10 H -0.181 1.181 11 H -0.204 1.204 12 H -0.207 1.207 13 C -0.067 4.067 14 N -0.268 5.268 15 C -0.035 4.035 16 C -0.190 4.190 17 C -0.161 4.161 18 C 0.054 3.946 19 C -0.226 4.226 20 C -0.194 4.194 21 O -0.280 6.280 22 C 0.282 3.718 23 O -0.384 6.384 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.094 0.906 27 H 0.007 0.993 28 H -0.007 1.007 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.037 0.963 32 H 0.164 0.836 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.119 0.881 36 H 0.142 0.858 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.136 0.864 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.132 0.868 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.296 6.697 -24.437 25.885 hybrid contribution 1.584 -0.018 1.617 2.264 sum -3.712 6.679 -22.820 24.065 Atomic orbital electron populations 1.21488 0.93640 1.00658 1.01019 1.21005 0.97417 0.98047 0.92633 0.92963 1.19006 0.93517 0.94852 0.93166 1.21658 1.34406 1.08632 0.91825 0.91609 1.26043 0.95195 0.96127 1.02944 1.70145 1.40363 1.23174 1.24241 0.85380 0.78019 0.78916 0.78631 1.18121 1.20379 1.20742 1.22111 0.97399 0.97900 0.89320 1.60945 1.60703 1.05405 0.99709 1.22570 0.87391 0.99505 0.94020 1.21814 1.03373 0.91459 1.02333 1.23292 0.97028 1.00722 0.95050 1.23619 0.84946 0.88417 0.97579 1.22371 1.04998 0.95212 1.00028 1.21916 1.04526 1.04368 0.88616 1.87041 1.46752 1.53692 1.40520 1.25122 0.93361 0.74730 0.78552 1.90702 1.67988 1.43446 1.36225 0.94484 0.94156 0.90555 0.99254 1.00743 0.92972 0.91235 0.96309 0.83570 0.93994 0.90012 0.88128 0.85793 0.85210 0.91326 0.86402 0.93855 0.90892 0.86801 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.14 8.89 71.98 0.64 -3.50 16 2 C -0.07 -3.07 2.48 -10.79 -0.03 -3.10 16 3 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 4 C 0.03 1.80 4.45 29.85 0.13 1.93 16 5 C -0.53 -30.78 8.41 25.60 0.22 -30.57 16 6 H 0.07 3.64 7.06 -2.91 -0.02 3.62 16 7 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 8 N -0.94 -59.77 13.29 21.45 0.28 -59.49 16 9 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 10 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 C 0.06 2.32 4.34 86.30 0.37 2.70 16 14 N -0.63 -17.12 5.54 -470.37 -2.61 -19.73 16 15 C 0.06 1.35 0.89 3.49 0.00 1.36 16 16 C -0.13 -2.89 8.15 71.98 0.59 -2.30 16 17 C -0.12 -1.58 5.51 31.64 0.17 -1.41 16 18 C 0.09 1.34 1.24 -10.26 -0.01 1.33 16 19 C -0.17 -2.30 8.77 71.98 0.63 -1.66 16 20 C -0.14 -1.17 8.92 71.98 0.64 -0.53 16 21 O -0.36 -9.55 10.48 -50.12 -0.53 -10.08 16 22 C 0.44 13.88 7.08 71.43 0.51 14.39 16 23 O -0.50 -20.95 15.62 21.62 0.34 -20.61 16 24 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 26 H 0.08 2.31 7.75 -2.39 -0.02 2.29 16 27 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 28 H -0.03 -1.62 8.14 -2.39 -0.02 -1.64 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.07 2.68 6.38 -2.38 -0.02 2.67 16 31 H 0.02 0.84 5.73 -2.39 -0.01 0.82 16 32 H 0.34 8.72 7.05 -89.69 -0.63 8.09 16 33 H 0.04 1.17 6.52 -2.39 -0.02 1.16 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 36 H 0.12 0.98 7.59 -2.39 -0.02 0.97 16 37 H 0.13 1.20 7.79 -2.38 -0.02 1.18 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.04 0.77 6.41 -2.39 -0.02 0.75 16 41 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 42 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -77.26 337.45 4.20 -73.06 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 0.35 Total: 10.55 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 4.33 Total: -21.27 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.32 Total: -79.22 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.19 Total: -30.69 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.26 4.20 -73.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183738109.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.604 kcal (2) G-P(sol) polarization free energy of solvation -77.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds