Wall clock time and date at job start Mon Mar 30 2020 01:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47372 * 2 1 4 4 C 1.34230 * 117.00173 * 180.02562 * 3 2 1 5 5 O 1.20818 * 119.99983 * 0.27497 * 4 3 2 6 6 C 1.50706 * 119.99763 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.50105 * 59.99988 * 6 4 3 8 8 C 1.53115 * 109.50408 * 299.91868 * 6 4 3 9 9 C 1.53127 * 109.15695 * 182.44538 * 8 6 4 10 10 C 1.53038 * 109.31027 * 57.59751 * 9 8 6 11 11 N 1.46849 * 109.52041 * 300.84125 * 10 9 8 12 12 C 1.46897 * 110.99684 * 185.83836 * 11 10 9 13 13 C 1.53003 * 109.47079 * 45.78998 * 12 11 10 14 14 C 1.53003 * 109.47233 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00213 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00290 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00030 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47527 * 89.99976 * 19 17 15 21 21 H 1.48498 * 109.47113 * 210.00303 * 19 17 15 22 22 H 1.48504 * 109.47156 * 329.99681 * 19 17 15 23 23 C 1.46842 * 111.20020 * 61.74414 * 11 10 9 24 24 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46822 * 300.00275 * 1 2 3 26 26 H 1.08998 * 109.47020 * 59.99843 * 1 2 3 27 27 H 1.09003 * 109.46945 * 240.00450 * 2 1 3 28 28 H 1.08998 * 109.47020 * 120.00157 * 2 1 3 29 29 H 1.08999 * 109.52339 * 302.31486 * 8 6 4 30 30 H 1.09002 * 109.52231 * 62.50025 * 8 6 4 31 31 H 1.09002 * 109.47131 * 297.65394 * 9 8 6 32 32 H 1.08997 * 109.53337 * 177.57758 * 9 8 6 33 33 H 1.09001 * 109.46217 * 180.82315 * 10 9 8 34 34 H 1.08998 * 109.45298 * 60.85110 * 10 9 8 35 35 H 1.09000 * 109.47116 * 165.78529 * 12 11 10 36 36 H 1.09000 * 109.47715 * 285.79257 * 12 11 10 37 37 H 1.09001 * 109.47281 * 299.99774 * 13 12 11 38 38 H 1.08998 * 109.47205 * 60.00096 * 13 12 11 39 39 H 1.08992 * 109.47253 * 300.00429 * 14 13 12 40 40 H 1.09004 * 109.47013 * 60.00026 * 14 13 12 41 41 H 0.97002 * 120.00690 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46187 * 178.24290 * 23 11 10 43 43 H 1.09002 * 109.45557 * 58.26483 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0060 6 6 3.9208 2.9374 -0.0012 7 1 3.5854 3.4703 0.8886 8 6 3.4505 3.6846 -1.2522 9 6 4.0887 5.0763 -1.2759 10 6 5.6122 4.9350 -1.2415 11 7 6.0108 4.2147 -0.0254 12 6 7.4730 4.1813 0.1111 13 6 8.0429 5.5743 -0.1639 14 6 9.5659 5.5397 -0.0212 15 6 10.1272 6.9116 -0.2926 16 1 9.4641 7.7269 -0.5416 17 6 11.4874 7.1260 -0.2231 18 7 12.2950 6.1333 0.0797 19 14 12.1832 8.8268 -0.5589 20 1 12.2482 9.5946 0.7105 21 1 13.5477 8.6993 -1.1307 22 1 11.3068 9.5385 -1.5236 23 6 5.4491 2.8581 -0.0036 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.7514 3.1311 -2.1417 30 1 2.3649 3.7813 -1.2321 31 1 3.7561 5.6435 -0.4066 32 1 3.7921 5.5978 -2.1859 33 1 6.0688 5.9248 -1.2435 34 1 5.9452 4.3796 -2.1182 35 1 7.7365 3.8743 1.1232 36 1 7.8886 3.4712 -0.6039 37 1 7.7795 5.8814 -1.1761 38 1 7.6274 6.2845 0.5510 39 1 9.8290 5.2328 0.9910 40 1 9.9817 4.8294 -0.7358 41 1 13.2520 6.2841 0.1290 42 1 5.7873 2.3394 0.8934 43 1 5.7831 2.3127 -0.8863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042222223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:41 Heat of formation + Delta-G solvation = -109.405255 kcal Electronic energy + Delta-G solvation = -20657.733131 eV Core-core repulsion = 17508.973805 eV Total energy + Delta-G solvation = -3148.759326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.88889 -38.84765 -36.81179 -34.89122 -33.05471 -32.05984 -31.18184 -30.69442 -26.70825 -25.13715 -24.13013 -23.04318 -22.18495 -21.27869 -19.87221 -19.52345 -17.82753 -16.79889 -16.77263 -16.16658 -15.43280 -14.88107 -14.74690 -14.42054 -14.31375 -14.02063 -13.61875 -13.35972 -13.22926 -13.06381 -12.59581 -12.24116 -12.17976 -11.97542 -11.65873 -11.55977 -11.38304 -11.06640 -10.93598 -10.81775 -10.77086 -10.55569 -10.51846 -10.40828 -10.17637 -9.60412 -9.32132 -9.03046 -8.32326 -8.07066 -5.97519 -3.99762 2.02991 2.39794 3.33601 3.39639 3.42851 4.09854 4.38380 4.48504 4.55824 4.59735 4.64613 4.72669 4.91917 4.96686 5.12606 5.25961 5.35815 5.38197 5.40895 5.48735 5.60304 5.62168 5.64907 5.69043 5.84232 5.85775 5.92225 6.03951 6.13744 6.22152 6.27783 6.31561 6.70939 6.78057 7.09674 7.33381 7.38612 7.57824 7.70231 7.85160 8.02687 8.45478 9.07403 9.64088 11.13904 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.051098 B = 0.002892 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.840174 B = 9680.759456 C =10107.791576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.468 3.532 5 O -0.507 6.507 6 C -0.076 4.076 7 H 0.118 0.882 8 C -0.110 4.110 9 C -0.115 4.115 10 C 0.043 3.957 11 N -0.538 5.538 12 C 0.057 3.943 13 C -0.111 4.111 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.071 3.929 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.016 0.984 40 H 0.014 0.986 41 H 0.260 0.740 42 H 0.081 0.919 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.755 -9.265 -1.518 25.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.311 3.689 5 O -0.394 6.394 6 C -0.095 4.095 7 H 0.135 0.865 8 C -0.148 4.148 9 C -0.153 4.153 10 C -0.085 4.085 11 N -0.263 5.263 12 C -0.070 4.070 13 C -0.149 4.149 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.057 4.057 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.032 0.968 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.554 -9.379 -1.101 25.377 hybrid contribution 0.887 0.135 -0.802 1.203 sum -22.667 -9.244 -1.903 24.553 Atomic orbital electron populations 1.21802 0.92596 1.02944 1.03566 1.23024 0.95377 0.80394 1.02610 1.86511 1.24675 1.32222 1.84035 1.23832 0.80437 0.92724 0.71936 1.90673 1.60397 1.43251 1.45095 1.21108 0.96631 0.89116 1.02658 0.86459 1.21574 1.00993 0.96640 0.95573 1.21610 0.95233 0.95743 1.02665 1.22295 0.95061 1.00415 0.90738 1.61990 1.11874 1.14599 1.37794 1.22290 0.84089 0.99485 1.01088 1.21801 0.99311 0.93509 1.00288 1.19073 0.88308 0.97042 0.97197 1.21238 0.91882 0.95515 1.47022 0.92697 1.25035 0.97294 0.96814 0.95431 1.69966 1.03493 1.31053 1.49025 0.86596 0.78311 0.84643 0.78455 1.20661 1.21282 1.19907 1.21850 0.90849 0.90718 1.02285 0.90279 0.91417 0.91463 0.91296 0.91233 0.91826 0.90551 0.90659 0.91005 0.88879 0.95004 0.90874 0.95143 0.93085 0.92459 0.96517 0.96786 0.93037 0.90007 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.29 37.16 0.38 -0.46 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.76 10.15 -39.26 -0.40 -4.16 16 4 C 0.47 5.70 7.26 36.01 0.26 5.96 16 5 O -0.51 -7.59 15.73 -18.74 -0.29 -7.88 16 6 C -0.08 -0.85 2.79 -91.69 -0.26 -1.11 16 7 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 8 C -0.11 -1.09 5.22 -26.61 -0.14 -1.23 16 9 C -0.11 -1.20 6.09 -26.65 -0.16 -1.36 16 10 C 0.04 0.58 4.85 -3.83 -0.02 0.56 16 11 N -0.54 -8.11 4.81 -234.67 -1.13 -9.24 16 12 C 0.06 1.02 5.27 -3.82 -0.02 1.00 16 13 C -0.11 -2.30 4.40 -26.73 -0.12 -2.41 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 16 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.07 0.98 4.00 -3.83 -0.02 0.97 16 24 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 1.36 5.81 -51.93 -0.30 1.06 16 34 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.03 0.56 8.08 -51.93 -0.42 0.14 16 37 H 0.05 1.02 6.21 -51.93 -0.32 0.70 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 42 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 43 H 0.04 0.60 8.08 -51.93 -0.42 0.18 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -31.69 345.18 -9.07 -40.77 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -7.77 Total: -4.44 kcal Atomic # 6 Polarization: -10.13 SS G_CDS: -0.40 Total: -10.54 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.39 Total: -35.76 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.69 Total: -12.04 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.69 -9.07 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042222223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.636 kcal (2) G-P(sol) polarization free energy of solvation -31.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds