Wall clock time and date at job start Mon Mar 30 2020 01:35:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45198 * 109.47372 * 2 1 4 4 C 1.34230 * 117.00173 * 180.02562 * 3 2 1 5 5 O 1.20818 * 119.99983 * 0.27497 * 4 3 2 6 6 C 1.50706 * 119.99763 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.50105 * 59.99988 * 6 4 3 8 8 C 1.53115 * 109.50408 * 299.91868 * 6 4 3 9 9 C 1.53127 * 109.15695 * 182.44538 * 8 6 4 10 10 C 1.53038 * 109.31027 * 57.59751 * 9 8 6 11 11 N 1.46849 * 109.52041 * 300.84125 * 10 9 8 12 12 C 1.46897 * 110.99684 * 185.83836 * 11 10 9 13 13 C 1.53003 * 109.47079 * 45.78998 * 12 11 10 14 14 C 1.53003 * 109.47233 * 179.97438 * 13 12 11 15 15 C 1.50694 * 109.47352 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00213 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00290 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00030 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00233 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47527 * 89.99976 * 19 17 15 21 21 H 1.48498 * 109.47113 * 210.00303 * 19 17 15 22 22 H 1.48504 * 109.47156 * 329.99681 * 19 17 15 23 23 C 1.46842 * 111.20020 * 61.74414 * 11 10 9 24 24 H 1.08999 * 109.47195 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46822 * 300.00275 * 1 2 3 26 26 H 1.08998 * 109.47020 * 59.99843 * 1 2 3 27 27 H 1.09003 * 109.46945 * 240.00450 * 2 1 3 28 28 H 1.08998 * 109.47020 * 120.00157 * 2 1 3 29 29 H 1.08999 * 109.52339 * 302.31486 * 8 6 4 30 30 H 1.09002 * 109.52231 * 62.50025 * 8 6 4 31 31 H 1.09002 * 109.47131 * 297.65394 * 9 8 6 32 32 H 1.08997 * 109.53337 * 177.57758 * 9 8 6 33 33 H 1.09001 * 109.46217 * 180.82315 * 10 9 8 34 34 H 1.08998 * 109.45298 * 60.85110 * 10 9 8 35 35 H 1.09000 * 109.47116 * 165.78529 * 12 11 10 36 36 H 1.09000 * 109.47715 * 285.79257 * 12 11 10 37 37 H 1.09001 * 109.47281 * 299.99774 * 13 12 11 38 38 H 1.08998 * 109.47205 * 60.00096 * 13 12 11 39 39 H 1.08992 * 109.47253 * 300.00429 * 14 13 12 40 40 H 1.09004 * 109.47013 * 60.00026 * 14 13 12 41 41 H 0.97002 * 120.00690 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.46187 * 178.24290 * 23 11 10 43 43 H 1.09002 * 109.45557 * 58.26483 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0060 6 6 3.9208 2.9374 -0.0012 7 1 3.5854 3.4703 0.8886 8 6 3.4505 3.6846 -1.2522 9 6 4.0887 5.0763 -1.2759 10 6 5.6122 4.9350 -1.2415 11 7 6.0108 4.2147 -0.0254 12 6 7.4730 4.1813 0.1111 13 6 8.0429 5.5743 -0.1639 14 6 9.5659 5.5397 -0.0212 15 6 10.1272 6.9116 -0.2926 16 1 9.4641 7.7269 -0.5416 17 6 11.4874 7.1260 -0.2231 18 7 12.2950 6.1333 0.0797 19 14 12.1832 8.8268 -0.5589 20 1 12.2482 9.5946 0.7105 21 1 13.5477 8.6993 -1.1307 22 1 11.3068 9.5385 -1.5236 23 6 5.4491 2.8581 -0.0036 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8900 29 1 3.7514 3.1311 -2.1417 30 1 2.3649 3.7813 -1.2321 31 1 3.7561 5.6435 -0.4066 32 1 3.7921 5.5978 -2.1859 33 1 6.0688 5.9248 -1.2435 34 1 5.9452 4.3796 -2.1182 35 1 7.7365 3.8743 1.1232 36 1 7.8886 3.4712 -0.6039 37 1 7.7795 5.8814 -1.1761 38 1 7.6274 6.2845 0.5510 39 1 9.8290 5.2328 0.9910 40 1 9.9817 4.8294 -0.7358 41 1 13.2520 6.2841 0.1290 42 1 5.7873 2.3394 0.8934 43 1 5.7831 2.3127 -0.8863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042222223.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:40 Heat of formation + Delta-G solvation = -128.180956 kcal Electronic energy + Delta-G solvation = -20658.547306 eV Core-core repulsion = 17508.973805 eV Total energy + Delta-G solvation = -3149.573502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.83948 -39.94933 -37.75599 -36.40919 -34.85385 -32.86071 -32.52066 -31.92522 -28.49267 -26.13413 -25.59221 -23.84341 -23.57132 -22.49431 -21.19914 -20.70370 -18.80383 -18.47580 -17.64012 -17.57351 -16.66721 -16.38728 -16.21994 -15.75815 -15.29792 -14.99548 -14.82849 -14.50849 -14.36835 -14.03256 -13.67272 -13.59544 -13.45292 -13.14940 -12.91889 -12.73232 -12.68145 -12.47954 -12.41163 -12.31324 -11.98261 -11.70242 -11.57493 -11.53174 -11.41248 -11.37371 -11.19741 -11.00019 -10.54487 -9.34205 -8.19532 -6.30806 1.08175 1.40672 1.42454 1.53344 1.55505 2.41469 2.93430 3.13642 3.45792 3.68286 3.80900 3.99914 4.06923 4.09530 4.10955 4.20524 4.26528 4.34495 4.37734 4.54585 4.63905 4.66776 4.69313 4.85118 4.85908 4.89036 4.93173 4.99894 5.07059 5.10068 5.13701 5.16062 5.29446 5.39259 5.42530 5.51659 5.73368 5.85257 6.00921 6.12895 6.26100 6.65442 6.86295 7.38484 8.92560 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.051098 B = 0.002892 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.840174 B = 9680.759456 C =10107.791576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.473 3.527 5 O -0.542 6.542 6 C -0.070 4.070 7 H 0.133 0.867 8 C -0.104 4.104 9 C -0.106 4.106 10 C 0.037 3.963 11 N -0.535 5.535 12 C 0.066 3.934 13 C -0.093 4.093 14 C 0.024 3.976 15 C -0.540 4.540 16 H 0.062 0.938 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.261 1.261 23 C 0.073 3.927 24 H 0.098 0.902 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.020 0.980 37 H 0.058 0.942 38 H 0.059 0.941 39 H -0.009 1.009 40 H -0.013 1.013 41 H 0.263 0.737 42 H 0.072 0.928 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.056 -7.995 -2.010 27.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.270 6.270 4 C 0.317 3.683 5 O -0.432 6.432 6 C -0.089 4.089 7 H 0.150 0.850 8 C -0.142 4.142 9 C -0.144 4.144 10 C -0.091 4.091 11 N -0.259 5.259 12 C -0.061 4.061 13 C -0.131 4.131 14 C -0.014 4.014 15 C -0.578 4.578 16 H 0.081 0.919 17 C -0.202 4.202 18 N -0.576 5.576 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.055 4.055 24 H 0.117 0.883 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.086 0.914 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.009 0.991 40 H 0.006 0.994 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -25.899 -8.104 -1.596 27.184 hybrid contribution 1.578 -0.338 -0.641 1.736 sum -24.321 -8.442 -2.238 25.842 Atomic orbital electron populations 1.21818 0.90146 1.04363 1.03881 1.23311 0.97261 0.79266 1.02426 1.86505 1.23458 1.33614 1.83440 1.23929 0.80834 0.92528 0.70969 1.90666 1.61271 1.44352 1.46874 1.21060 0.94458 0.89144 1.04269 0.84962 1.21578 1.02350 0.95862 0.94403 1.21582 0.92317 0.96348 1.04122 1.22408 0.97695 0.99311 0.89666 1.61985 1.09616 1.15498 1.38832 1.22039 0.86236 0.97361 1.00500 1.21534 0.95458 0.95287 1.00788 1.18985 0.92019 0.95607 0.94749 1.21681 0.92564 0.96537 1.47008 0.91931 1.26033 0.97769 1.01361 0.95001 1.70108 1.03912 1.33598 1.49961 0.85412 0.77529 0.79140 0.78761 1.19716 1.20881 1.18529 1.21805 0.92915 0.89562 1.01220 0.88327 0.91120 0.91064 0.91540 0.91513 0.92231 0.88114 0.89954 0.88837 0.89904 0.95664 0.91378 0.96167 0.92301 0.92269 0.99080 0.99438 0.92817 0.90930 0.95481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 71.98 0.74 -0.53 16 2 C 0.05 0.78 6.19 71.98 0.45 1.22 16 3 O -0.35 -6.83 10.15 -51.41 -0.52 -7.35 16 4 C 0.47 11.05 7.26 71.24 0.52 11.57 16 5 O -0.54 -16.25 15.73 21.99 0.35 -15.90 16 6 C -0.07 -1.47 2.79 -11.49 -0.03 -1.50 16 7 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 8 C -0.10 -1.79 5.22 30.68 0.16 -1.63 16 9 C -0.11 -1.92 6.09 30.65 0.19 -1.74 16 10 C 0.04 0.96 4.85 86.33 0.42 1.38 16 11 N -0.53 -15.91 4.81 -896.36 -4.31 -20.22 16 12 C 0.07 2.41 5.27 86.30 0.46 2.87 16 13 C -0.09 -3.89 4.40 30.60 0.13 -3.75 16 14 C 0.02 1.30 4.97 29.85 0.15 1.45 16 15 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 16 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 17 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 18 N -0.94 -58.04 13.29 21.45 0.28 -57.75 16 19 Si 0.97 44.69 29.54 68.60 2.03 46.71 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 23 C 0.07 2.01 4.00 86.33 0.35 2.35 16 24 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 25 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 28 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 2.33 5.81 -2.39 -0.01 2.32 16 34 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.07 2.52 8.14 -2.39 -0.02 2.51 16 36 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 37 H 0.06 2.36 6.21 -2.39 -0.01 2.34 16 38 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 39 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 40 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 43 H 0.03 0.81 8.08 -2.39 -0.02 0.80 16 Total: -1.00 -69.06 345.18 2.99 -66.06 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.95 Total: 7.47 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 4.22 Total: -19.03 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -4.02 Total: -77.97 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.18 Total: -23.25 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.06 2.99 -66.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042222223.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.117 kcal (2) G-P(sol) polarization free energy of solvation -69.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds