Wall clock time and date at job start Mon Mar 30 2020 01:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45194 * 109.47284 * 2 1 4 4 C 1.34231 * 117.00085 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00105 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00025 * 180.02562 * 4 3 2 7 7 C 1.53111 * 109.52208 * 180.02562 * 6 4 3 8 8 C 1.53040 * 109.27976 * 182.37553 * 7 6 4 9 9 N 1.46844 * 109.52213 * 59.17809 * 8 7 6 10 10 C 1.46901 * 111.00526 * 174.16367 * 9 8 7 11 11 C 1.52992 * 109.47859 * 170.00090 * 10 9 8 12 12 C 1.52997 * 109.47482 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.47212 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 11 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47432 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46890 * 120.00210 * 17 15 13 20 20 H 1.48501 * 109.47062 * 240.00257 * 17 15 13 21 21 C 1.46848 * 111.20049 * 298.25822 * 9 8 7 22 22 C 1.53045 * 109.52212 * 61.74502 * 21 9 8 23 23 H 1.08994 * 109.47453 * 59.99838 * 1 2 3 24 24 H 1.09003 * 109.47129 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47097 * 299.99682 * 1 2 3 26 26 H 1.09001 * 109.46611 * 240.00275 * 2 1 3 27 27 H 1.09004 * 109.47325 * 120.00727 * 2 1 3 28 28 H 1.09003 * 109.51840 * 300.12756 * 6 4 3 29 29 H 1.08993 * 109.50713 * 62.43516 * 7 6 4 30 30 H 1.08998 * 109.50742 * 302.31723 * 7 6 4 31 31 H 1.09001 * 109.46414 * 299.16653 * 8 7 6 32 32 H 1.08996 * 109.45780 * 179.18574 * 8 7 6 33 33 H 1.09002 * 109.46980 * 49.99749 * 10 9 8 34 34 H 1.09001 * 109.46628 * 290.00171 * 10 9 8 35 35 H 1.09002 * 109.47103 * 59.99734 * 11 10 9 36 36 H 1.08998 * 109.46862 * 300.00546 * 11 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 38 38 H 1.09001 * 109.46832 * 299.99974 * 12 11 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.46861 * 181.75554 * 21 9 8 41 41 H 1.08996 * 109.46450 * 301.72736 * 21 9 8 42 42 H 1.08996 * 109.50378 * 180.88718 * 22 21 9 43 43 H 1.08993 * 109.50521 * 60.75626 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 6 5.4499 2.8585 -0.0014 8 6 6.0289 4.2739 0.0590 9 7 5.5566 4.9457 1.2764 10 6 6.2012 6.2557 1.4387 11 6 5.5116 7.0275 2.5654 12 6 6.1834 8.3916 2.7348 13 6 5.5037 9.1520 3.8443 14 1 4.6757 8.7067 4.3757 15 6 5.9397 10.4158 4.1815 16 7 6.9484 10.9578 3.5347 17 14 5.0977 11.3581 5.5572 18 1 3.9993 10.5334 6.1220 19 1 6.0847 11.6644 6.6236 20 1 4.5399 12.6252 5.0200 21 6 4.0938 5.0753 1.2780 22 6 3.4571 3.6838 1.2540 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8932 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 3.5831 3.4715 -0.8881 29 1 5.7881 2.3657 -0.9128 30 1 5.7859 2.2906 0.8661 31 1 5.7037 4.8370 -0.8158 32 1 7.1174 4.2206 0.0727 33 1 6.1187 6.8189 0.5091 34 1 7.2534 6.1147 1.6859 35 1 5.5941 6.4643 3.4950 36 1 4.4594 7.1684 2.3182 37 1 6.1013 8.9550 1.8053 38 1 7.2355 8.2502 2.9823 39 1 7.2548 11.8471 3.7718 40 1 3.7770 5.6041 2.1769 41 1 3.7778 5.6345 0.3975 42 1 2.3715 3.7805 1.2393 43 1 3.7617 3.1288 2.1413 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042224177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:21 Heat of formation + Delta-G solvation = -109.784832 kcal Electronic energy + Delta-G solvation = -20603.218211 eV Core-core repulsion = 17454.442425 eV Total energy + Delta-G solvation = -3148.775786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87988 -38.85584 -36.86527 -34.84060 -33.09494 -32.02441 -31.12972 -30.56171 -27.13180 -25.21321 -23.48053 -23.26723 -22.31073 -21.22188 -19.85793 -19.56515 -17.86034 -16.80772 -16.78672 -16.27620 -15.40296 -14.97574 -14.59762 -14.51546 -14.29606 -13.95306 -13.62430 -13.41294 -13.23781 -13.05768 -12.27560 -12.24504 -12.19344 -11.98192 -11.72845 -11.52258 -11.30404 -11.14403 -10.92242 -10.85060 -10.82330 -10.75537 -10.49855 -10.34033 -10.18496 -9.61501 -9.32846 -9.02391 -8.33793 -8.04894 -5.98935 -4.00963 2.02539 2.43742 3.31809 3.39275 3.43509 4.09979 4.35822 4.47517 4.57259 4.58711 4.65419 4.66757 4.92278 5.01510 5.14666 5.32598 5.35353 5.37086 5.42245 5.42567 5.56216 5.62334 5.64451 5.67141 5.82539 5.86813 5.98556 6.06108 6.08795 6.19069 6.28808 6.30311 6.70053 6.77866 7.09126 7.37798 7.39064 7.56873 7.69155 7.83778 8.01435 8.44500 9.06467 9.63099 11.12550 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.031121 B = 0.003021 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.485252 B = 9267.176686 C =10007.795066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.357 6.357 4 C 0.469 3.531 5 O -0.509 6.509 6 C -0.081 4.081 7 C -0.099 4.099 8 C 0.056 3.944 9 N -0.541 5.541 10 C 0.056 3.944 11 C -0.113 4.113 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.050 3.950 22 C -0.106 4.106 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.080 0.920 33 H 0.029 0.971 34 H 0.072 0.928 35 H 0.056 0.944 36 H 0.050 0.950 37 H 0.014 0.986 38 H 0.016 0.984 39 H 0.259 0.741 40 H 0.096 0.904 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.848 -19.788 -9.507 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.274 6.274 4 C 0.312 3.688 5 O -0.396 6.396 6 C -0.100 4.100 7 C -0.137 4.137 8 C -0.073 4.073 9 N -0.266 5.266 10 C -0.071 4.071 11 C -0.150 4.150 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.078 4.078 22 C -0.144 4.144 23 H 0.085 0.915 24 H 0.097 0.903 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.035 0.965 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.053 0.947 42 H 0.097 0.903 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.415 -20.245 -9.116 24.117 hybrid contribution -0.564 0.922 -0.032 1.082 sum -9.979 -19.323 -9.148 23.593 Atomic orbital electron populations 1.21808 0.92588 1.02931 1.03653 1.23018 0.95421 0.80402 1.02511 1.86527 1.24759 1.32206 1.83944 1.23884 0.80374 0.92793 0.71781 1.90651 1.60445 1.43231 1.45315 1.21225 0.97162 0.89388 1.02212 1.21510 0.91210 0.97382 1.03567 1.22072 1.00363 0.93603 0.91230 1.62055 1.05697 1.22397 1.36427 1.22287 0.99071 0.86896 0.98800 1.21802 0.98927 0.98004 0.96301 1.19076 0.95923 0.89815 0.96805 1.21285 1.16299 1.00403 1.17622 0.92646 1.25033 0.95132 0.97733 0.96665 1.69976 1.26366 1.15960 1.41265 0.86548 0.79534 0.79851 0.82143 1.19721 1.21028 1.21067 1.22212 0.88032 0.95279 1.02306 1.21625 1.00516 0.96329 0.95937 0.91469 0.90298 0.91327 0.91380 0.91242 0.87730 0.90956 0.90050 0.94914 0.90187 0.95254 0.90947 0.92500 0.93114 0.96805 0.96536 0.93097 0.88628 0.94749 0.90309 0.90545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.29 37.16 0.38 -0.51 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.36 -3.81 10.16 -39.26 -0.40 -4.20 16 4 C 0.47 5.54 7.26 36.01 0.26 5.80 16 5 O -0.51 -7.23 15.73 -18.74 -0.29 -7.52 16 6 C -0.08 -0.87 2.69 -91.65 -0.25 -1.11 16 7 C -0.10 -1.12 4.68 -26.65 -0.12 -1.24 16 8 C 0.06 0.68 5.42 -3.83 -0.02 0.66 16 9 N -0.54 -7.93 4.81 -234.67 -1.13 -9.06 16 10 C 0.06 0.96 5.27 -3.83 -0.02 0.94 16 11 C -0.11 -2.29 4.40 -26.74 -0.12 -2.41 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.05 0.66 4.85 -3.83 -0.02 0.64 16 22 C -0.11 -1.19 5.32 -26.64 -0.14 -1.33 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.03 8.04 -51.93 -0.42 0.61 16 31 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 33 H 0.03 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.00 6.21 -51.93 -0.32 0.67 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.10 1.38 5.81 -51.93 -0.30 1.08 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 345.18 15.07 5.20 5.20 Total: -1.00 -31.50 345.18 -9.04 -40.54 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -7.77 Total: -4.43 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.37 Total: -10.90 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.39 Total: -35.36 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.69 Total: -11.73 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.50 -9.04 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042224177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.245 kcal (2) G-P(sol) polarization free energy of solvation -31.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds