Wall clock time and date at job start Mon Mar 30 2020 01:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45203 * 109.47187 * 2 1 4 4 C 1.34230 * 116.99892 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99828 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99843 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46975 * 180.02562 * 6 4 3 8 8 N 1.46896 * 109.47433 * 179.97438 * 7 6 4 9 9 C 1.46897 * 111.00456 * 190.00075 * 8 7 6 10 10 C 1.52991 * 109.47371 * 71.69939 * 9 8 7 11 11 C 1.50705 * 109.47322 * 174.81870 * 10 9 8 12 12 H 1.07998 * 120.00021 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99951 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99570 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00208 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47458 * 89.99386 * 15 13 11 17 17 H 1.48498 * 109.47009 * 209.99763 * 15 13 11 18 18 H 1.48504 * 109.47052 * 329.99783 * 15 13 11 19 19 C 1.46900 * 111.00117 * 66.04176 * 8 7 6 20 20 C 1.52997 * 109.47443 * 190.97431 * 19 8 7 21 21 C 1.53001 * 117.50034 * 243.18429 * 20 19 8 22 22 C 1.52999 * 60.00035 * 252.50901 * 21 20 19 23 23 H 1.08994 * 109.47193 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46889 * 300.00600 * 1 2 3 25 25 H 1.09004 * 109.46671 * 59.99999 * 1 2 3 26 26 H 1.09000 * 109.46889 * 239.99400 * 2 1 3 27 27 H 1.09004 * 109.46671 * 120.00001 * 2 1 3 28 28 H 1.08993 * 109.47783 * 59.99796 * 6 4 3 29 29 H 1.08999 * 109.46990 * 299.99381 * 6 4 3 30 30 H 1.08999 * 109.47427 * 59.99906 * 7 6 4 31 31 H 1.09000 * 109.47293 * 299.99941 * 7 6 4 32 32 H 1.09004 * 109.47355 * 191.70488 * 9 8 7 33 33 H 1.08997 * 109.46663 * 311.69620 * 9 8 7 34 34 H 1.09004 * 109.47339 * 294.81732 * 10 9 8 35 35 H 1.09001 * 109.47104 * 54.81649 * 10 9 8 36 36 H 0.96998 * 119.99717 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47103 * 310.97632 * 19 8 7 38 38 H 1.08997 * 109.47206 * 70.97294 * 19 8 7 39 39 H 1.09007 * 115.54894 * 28.89282 * 20 19 8 40 40 H 1.09000 * 117.49629 * 0.02562 * 21 20 19 41 41 H 1.08997 * 117.49534 * 145.02092 * 21 20 19 42 42 H 1.09000 * 117.49759 * 252.51107 * 22 21 20 43 43 H 1.09001 * 117.49831 * 107.48624 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0012 7 6 5.4487 2.8572 0.0010 8 7 6.0103 4.2146 0.0010 9 6 7.4595 4.1848 -0.2372 10 6 7.7289 3.8136 -1.6968 11 6 9.2073 3.9069 -1.9742 12 1 9.8867 4.2011 -1.1880 13 6 9.6924 3.6157 -3.2316 14 7 10.9825 3.6976 -3.4738 15 14 8.5173 3.1061 -4.5912 16 1 8.0522 4.3125 -5.3215 17 1 9.2158 2.1956 -5.5337 18 1 7.3496 2.4050 -3.9994 19 6 5.6971 4.9139 1.2543 20 6 6.0522 6.3955 1.1142 21 6 7.1449 6.9498 2.0306 22 6 5.6811 7.3236 2.2726 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.5846 3.4693 0.8911 29 1 3.5853 3.4697 -0.8888 30 1 5.7847 2.3255 -0.8892 31 1 5.7847 2.3246 0.8908 32 1 7.8824 5.1675 -0.0282 33 1 7.9201 3.4446 0.4170 34 1 7.3882 2.7948 -1.8814 35 1 7.1923 4.5004 -2.3514 36 1 11.3238 3.4931 -4.3584 37 1 4.6333 4.8141 1.4700 38 1 6.2754 4.4771 2.0685 39 1 5.9884 6.8008 0.1043 40 1 7.6110 6.2588 2.7330 41 1 7.8002 7.7198 1.6236 42 1 5.3735 8.3395 2.0248 43 1 5.1839 6.8786 3.1345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064569409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:50 Heat of formation + Delta-G solvation = -71.357747 kcal Electronic energy + Delta-G solvation = -20710.283174 eV Core-core repulsion = 17563.173712 eV Total energy + Delta-G solvation = -3147.109462 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.53997 -38.43531 -36.84431 -35.98461 -33.15222 -32.17896 -31.28492 -29.85683 -26.61502 -25.00223 -23.32877 -22.30959 -22.06848 -20.63883 -20.43976 -19.63023 -17.76218 -16.95895 -16.80243 -16.29732 -15.72391 -15.05926 -14.68582 -14.41225 -14.15436 -13.83410 -13.47106 -13.22675 -13.11392 -13.03159 -12.51133 -12.42250 -12.13739 -11.87491 -11.70204 -11.45407 -11.38398 -11.09533 -11.01740 -10.85169 -10.69844 -10.47510 -10.22918 -10.13872 -9.86018 -9.63435 -9.54619 -9.14926 -8.48375 -7.92217 -6.00241 -3.97846 2.18866 2.54201 3.36105 3.42972 3.48755 3.89256 4.23387 4.50488 4.65898 4.67580 4.76484 4.85891 4.97485 5.01611 5.04528 5.10867 5.25616 5.34836 5.44455 5.50064 5.51447 5.56772 5.65882 5.68893 5.71357 5.83820 5.95043 6.01989 6.12918 6.20570 6.27186 6.32892 6.42562 6.48523 6.83482 7.16664 7.29793 7.60513 7.63620 7.72759 7.88224 8.57496 9.04251 9.62719 11.13237 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.005396 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.155953 B = 5187.652541 C = 7366.372742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.362 6.362 4 C 0.462 3.538 5 O -0.505 6.505 6 C -0.111 4.111 7 C 0.064 3.936 8 N -0.539 5.539 9 C 0.072 3.928 10 C -0.008 4.008 11 C -0.519 4.519 12 H 0.070 0.930 13 C 0.068 3.932 14 N -0.905 5.905 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.265 1.265 19 C 0.080 3.920 20 C -0.139 4.139 21 C -0.181 4.181 22 C -0.184 4.184 23 H 0.078 0.922 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.021 0.979 36 H 0.262 0.738 37 H 0.072 0.928 38 H 0.031 0.969 39 H 0.115 0.885 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.106 -0.521 10.413 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.014 4.014 3 O -0.279 6.279 4 C 0.305 3.695 5 O -0.392 6.392 6 C -0.149 4.149 7 C -0.064 4.064 8 N -0.263 5.263 9 C -0.054 4.054 10 C -0.045 4.045 11 C -0.557 4.557 12 H 0.089 0.911 13 C -0.133 4.133 14 N -0.544 5.544 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.048 4.048 20 C -0.158 4.158 21 C -0.218 4.218 22 C -0.221 4.221 23 H 0.097 0.903 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.039 0.961 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.133 0.867 40 H 0.109 0.891 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.978 -0.614 9.892 22.301 hybrid contribution -0.031 -0.893 -0.136 0.904 sum -20.009 -1.507 9.756 22.311 Atomic orbital electron populations 1.21802 0.92708 1.02877 1.03498 1.23008 0.95271 0.80470 1.02646 1.86509 1.24911 1.32218 1.84288 1.23876 0.80336 0.93084 0.72208 1.90695 1.60288 1.43330 1.44923 1.21450 0.97081 0.90102 1.06226 1.21880 0.90793 0.90662 1.03033 1.62060 1.15879 1.15453 1.32898 1.22150 0.83176 1.00864 0.99199 1.19572 0.97163 0.96185 0.91616 1.21082 0.90972 1.46205 0.97488 0.91137 1.24985 0.94927 0.94891 0.98533 1.69918 1.12477 1.49818 1.22194 0.86769 0.81604 0.78901 0.81980 1.20247 1.21549 1.18953 1.21723 0.99975 0.92003 0.91055 1.22279 1.02986 0.94131 0.96354 1.23037 0.91566 1.03884 1.03360 1.22933 0.98641 1.00169 1.00363 0.90333 0.91540 0.91432 0.91190 0.91327 0.87911 0.86703 0.88974 0.94252 0.90662 0.95565 0.96808 0.96054 0.92791 0.90988 0.95044 0.86730 0.89109 0.88795 0.89026 0.89288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.63 16 2 C 0.06 0.58 6.19 37.16 0.23 0.81 16 3 O -0.36 -4.33 10.22 -39.26 -0.40 -4.73 16 4 C 0.46 6.34 7.96 36.00 0.29 6.62 16 5 O -0.51 -8.54 15.73 -18.75 -0.29 -8.83 16 6 C -0.11 -1.37 5.76 -27.89 -0.16 -1.53 16 7 C 0.06 1.02 4.10 -3.83 -0.02 1.00 16 8 N -0.54 -8.88 4.46 -234.64 -1.05 -9.93 16 9 C 0.07 1.46 4.78 -3.83 -0.02 1.45 16 10 C -0.01 -0.19 3.99 -27.89 -0.11 -0.30 16 11 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 15 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 18 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 19 C 0.08 1.08 5.11 -3.83 -0.02 1.06 16 20 C -0.14 -1.82 4.71 -90.62 -0.43 -2.25 16 21 C -0.18 -2.25 10.04 -26.73 -0.27 -2.52 16 22 C -0.18 -1.96 10.25 -26.73 -0.27 -2.24 16 23 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 27 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.10 1.04 6.35 -51.93 -0.33 0.71 16 29 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.09 1.70 6.44 -51.93 -0.33 1.36 16 31 H 0.04 0.63 8.08 -51.93 -0.42 0.21 16 32 H 0.07 1.53 6.83 -51.93 -0.35 1.18 16 33 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 34 H 0.01 0.34 5.84 -51.93 -0.30 0.04 16 35 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.07 0.82 6.06 -51.93 -0.31 0.50 16 38 H 0.03 0.43 7.84 -51.93 -0.41 0.03 16 39 H 0.11 1.66 8.14 -51.93 -0.42 1.23 16 40 H 0.09 1.12 8.03 -51.93 -0.42 0.70 16 41 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -32.48 349.68 -8.70 -41.18 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.50 Total: -1.14 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.83 Total: -11.94 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.27 Total: -37.47 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.70 Total: -13.56 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.48 -8.70 -41.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064569409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.178 kcal (2) G-P(sol) polarization free energy of solvation -32.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds