Wall clock time and date at job start Mon Mar 30 2020 01:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45203 * 109.47187 * 2 1 4 4 C 1.34230 * 116.99892 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99828 * 359.97438 * 4 3 2 6 6 C 1.50692 * 119.99843 * 180.02562 * 4 3 2 7 7 C 1.53000 * 109.46975 * 180.02562 * 6 4 3 8 8 N 1.46896 * 109.47433 * 179.97438 * 7 6 4 9 9 C 1.46897 * 111.00456 * 190.00075 * 8 7 6 10 10 C 1.52991 * 109.47371 * 71.69939 * 9 8 7 11 11 C 1.50705 * 109.47322 * 174.81870 * 10 9 8 12 12 H 1.07998 * 120.00021 * 0.02562 * 11 10 9 13 13 C 1.37878 * 119.99951 * 179.97438 * 11 10 9 14 14 N 1.31517 * 119.99570 * 179.97438 * 13 11 10 15 15 Si 1.86797 * 120.00208 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47458 * 89.99386 * 15 13 11 17 17 H 1.48498 * 109.47009 * 209.99763 * 15 13 11 18 18 H 1.48504 * 109.47052 * 329.99783 * 15 13 11 19 19 C 1.46900 * 111.00117 * 66.04176 * 8 7 6 20 20 C 1.52997 * 109.47443 * 190.97431 * 19 8 7 21 21 C 1.53001 * 117.50034 * 243.18429 * 20 19 8 22 22 C 1.52999 * 60.00035 * 252.50901 * 21 20 19 23 23 H 1.08994 * 109.47193 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46889 * 300.00600 * 1 2 3 25 25 H 1.09004 * 109.46671 * 59.99999 * 1 2 3 26 26 H 1.09000 * 109.46889 * 239.99400 * 2 1 3 27 27 H 1.09004 * 109.46671 * 120.00001 * 2 1 3 28 28 H 1.08993 * 109.47783 * 59.99796 * 6 4 3 29 29 H 1.08999 * 109.46990 * 299.99381 * 6 4 3 30 30 H 1.08999 * 109.47427 * 59.99906 * 7 6 4 31 31 H 1.09000 * 109.47293 * 299.99941 * 7 6 4 32 32 H 1.09004 * 109.47355 * 191.70488 * 9 8 7 33 33 H 1.08997 * 109.46663 * 311.69620 * 9 8 7 34 34 H 1.09004 * 109.47339 * 294.81732 * 10 9 8 35 35 H 1.09001 * 109.47104 * 54.81649 * 10 9 8 36 36 H 0.96998 * 119.99717 * 180.02562 * 14 13 11 37 37 H 1.08999 * 109.47103 * 310.97632 * 19 8 7 38 38 H 1.08997 * 109.47206 * 70.97294 * 19 8 7 39 39 H 1.09007 * 115.54894 * 28.89282 * 20 19 8 40 40 H 1.09000 * 117.49629 * 0.02562 * 21 20 19 41 41 H 1.08997 * 117.49534 * 145.02092 * 21 20 19 42 42 H 1.09000 * 117.49759 * 252.51107 * 22 21 20 43 43 H 1.09001 * 117.49831 * 107.48624 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9373 0.0012 7 6 5.4487 2.8572 0.0010 8 7 6.0103 4.2146 0.0010 9 6 7.4595 4.1848 -0.2372 10 6 7.7289 3.8136 -1.6968 11 6 9.2073 3.9069 -1.9742 12 1 9.8867 4.2011 -1.1880 13 6 9.6924 3.6157 -3.2316 14 7 10.9825 3.6976 -3.4738 15 14 8.5173 3.1061 -4.5912 16 1 8.0522 4.3125 -5.3215 17 1 9.2158 2.1956 -5.5337 18 1 7.3496 2.4050 -3.9994 19 6 5.6971 4.9139 1.2543 20 6 6.0522 6.3955 1.1142 21 6 7.1449 6.9498 2.0306 22 6 5.6811 7.3236 2.2726 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.5846 3.4693 0.8911 29 1 3.5853 3.4697 -0.8888 30 1 5.7847 2.3255 -0.8892 31 1 5.7847 2.3246 0.8908 32 1 7.8824 5.1675 -0.0282 33 1 7.9201 3.4446 0.4170 34 1 7.3882 2.7948 -1.8814 35 1 7.1923 4.5004 -2.3514 36 1 11.3238 3.4931 -4.3584 37 1 4.6333 4.8141 1.4700 38 1 6.2754 4.4771 2.0685 39 1 5.9884 6.8008 0.1043 40 1 7.6110 6.2588 2.7330 41 1 7.8002 7.7198 1.6236 42 1 5.3735 8.3395 2.0248 43 1 5.1839 6.8786 3.1345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064569409.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:49 Heat of formation + Delta-G solvation = -91.115530 kcal Electronic energy + Delta-G solvation = -20711.139936 eV Core-core repulsion = 17563.173712 eV Total energy + Delta-G solvation = -3147.966224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.58821 -39.63112 -37.84787 -37.15945 -35.19613 -33.32452 -32.49749 -31.37303 -27.95884 -26.52336 -24.39682 -23.44511 -23.08931 -21.98759 -21.64217 -20.94864 -19.04300 -18.76825 -17.85253 -17.41235 -16.90912 -16.32030 -16.19528 -15.71426 -15.44969 -15.09680 -14.77376 -14.65598 -14.35510 -14.15801 -13.82257 -13.58947 -13.31891 -13.03817 -12.89044 -12.76175 -12.49558 -12.34409 -12.25914 -12.13068 -11.95393 -11.79033 -11.60030 -11.56957 -11.53268 -11.34015 -11.07069 -10.75596 -10.66290 -9.29246 -8.30303 -6.33664 1.13627 1.34596 1.36554 1.49037 1.60472 2.35658 2.87188 3.05435 3.07854 3.66527 3.85130 3.92900 3.99319 4.03229 4.08514 4.13241 4.24224 4.32370 4.35461 4.44607 4.53953 4.59190 4.76148 4.80641 4.84416 4.85096 4.90433 4.92787 4.95979 5.02495 5.09893 5.15115 5.29837 5.32024 5.43549 5.44980 5.48703 5.63427 6.07644 6.22947 6.29924 6.69733 6.73886 7.30899 8.86549 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.005396 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.155953 B = 5187.652541 C = 7366.372742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.358 6.358 4 C 0.466 3.534 5 O -0.545 6.545 6 C -0.100 4.100 7 C 0.066 3.934 8 N -0.537 5.537 9 C 0.087 3.913 10 C 0.000 4.000 11 C -0.531 4.531 12 H 0.033 0.967 13 C 0.008 3.992 14 N -0.950 5.950 15 Si 0.949 3.051 16 H -0.262 1.262 17 H -0.284 1.284 18 H -0.254 1.254 19 C 0.082 3.918 20 C -0.156 4.156 21 C -0.198 4.198 22 C -0.153 4.153 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.135 0.865 29 H 0.129 0.871 30 H 0.061 0.939 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.013 0.987 34 H 0.010 0.990 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.104 0.896 38 H 0.030 0.970 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.528 -0.122 10.829 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.311 3.689 5 O -0.435 6.435 6 C -0.137 4.137 7 C -0.062 4.062 8 N -0.261 5.261 9 C -0.041 4.041 10 C -0.037 4.037 11 C -0.569 4.569 12 H 0.051 0.949 13 C -0.189 4.189 14 N -0.591 5.591 15 Si 0.772 3.228 16 H -0.187 1.187 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.045 4.045 20 C -0.175 4.175 21 C -0.235 4.235 22 C -0.190 4.190 23 H 0.117 0.883 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.152 0.848 29 H 0.147 0.853 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.121 0.879 38 H 0.048 0.952 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.438 -0.198 10.327 25.613 hybrid contribution 1.070 -1.014 -0.185 1.486 sum -22.368 -1.212 10.142 24.590 Atomic orbital electron populations 1.21817 0.90109 1.04351 1.03873 1.23300 0.97286 0.79349 1.02381 1.86507 1.23720 1.33589 1.83675 1.24086 0.80694 0.93060 0.71092 1.90688 1.61249 1.44628 1.46941 1.21365 0.94147 0.89802 1.08374 1.21790 0.93369 0.89781 1.01285 1.61980 1.12893 1.16040 1.35147 1.21784 0.86016 0.99963 0.96319 1.19433 0.93941 0.95966 0.94409 1.21420 0.93026 1.45710 0.96750 0.94875 1.25933 0.96676 0.94891 1.01380 1.70061 1.14647 1.51229 1.23163 0.85675 0.79420 0.79102 0.78558 1.18701 1.20968 1.17766 1.21841 1.01768 0.91683 0.89240 1.22226 1.04442 0.94350 0.96478 1.23081 0.92740 1.04094 1.03605 1.23015 0.96554 1.00201 0.99225 0.88330 0.90916 0.91243 0.91850 0.91363 0.84757 0.85318 0.92058 0.94853 0.91157 0.96879 0.97171 0.95753 0.92467 0.87851 0.95199 0.88269 0.89354 0.89413 0.87693 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 10.29 71.98 0.74 -0.83 16 2 C 0.05 0.90 6.19 71.98 0.45 1.34 16 3 O -0.36 -7.81 10.22 -51.42 -0.53 -8.34 16 4 C 0.47 12.04 7.96 71.23 0.57 12.61 16 5 O -0.54 -18.23 15.73 21.97 0.35 -17.88 16 6 C -0.10 -2.20 5.76 29.85 0.17 -2.02 16 7 C 0.07 2.02 4.10 86.30 0.35 2.37 16 8 N -0.54 -17.09 4.46 -896.27 -3.99 -21.09 16 9 C 0.09 3.55 4.78 86.30 0.41 3.96 16 10 C 0.00 0.01 3.99 29.85 0.12 0.13 16 11 C -0.53 -31.66 9.66 25.60 0.25 -31.41 16 12 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 13 C 0.01 0.49 5.47 84.65 0.46 0.95 16 14 N -0.95 -61.01 13.96 21.45 0.30 -60.71 16 15 Si 0.95 46.19 27.47 68.60 1.88 48.08 16 16 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 17 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 18 H -0.25 -11.81 6.54 99.48 0.65 -11.16 16 19 C 0.08 2.02 5.11 86.30 0.44 2.46 16 20 C -0.16 -3.83 4.71 -10.79 -0.05 -3.88 16 21 C -0.20 -4.72 10.04 30.59 0.31 -4.41 16 22 C -0.15 -2.81 10.25 30.59 0.31 -2.49 16 23 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 27 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 28 H 0.13 2.13 6.35 -2.39 -0.02 2.12 16 29 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.06 2.26 6.44 -2.39 -0.02 2.24 16 31 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.07 2.93 6.83 -2.38 -0.02 2.91 16 33 H 0.01 0.56 8.06 -2.39 -0.02 0.54 16 34 H 0.01 0.50 5.84 -2.38 -0.01 0.49 16 35 H 0.02 1.17 7.57 -2.39 -0.02 1.16 16 36 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 37 H 0.10 1.92 6.06 -2.39 -0.01 1.90 16 38 H 0.03 0.77 7.84 -2.39 -0.02 0.75 16 39 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 40 H 0.09 2.12 8.03 -2.39 -0.02 2.10 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.11 1.61 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -72.25 349.68 3.45 -68.80 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.91 Total: 12.35 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 4.53 Total: -21.21 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.69 Total: -81.80 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.18 Total: -26.22 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.88 Total: 48.08 kcal Total: -72.25 3.45 -68.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064569409.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.314 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds