Wall clock time and date at job start Mon Mar 30 2020 00:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 N 1.46493 * 109.47395 * 120.00906 * 2 1 3 13 13 C 1.46495 * 120.00627 * 59.99798 * 12 2 1 14 14 C 1.34782 * 119.99615 * 239.99773 * 12 2 1 15 15 O 1.21281 * 120.00412 * 0.02562 * 14 12 2 16 16 C 1.50709 * 119.99651 * 179.97438 * 14 12 2 17 17 C 1.53004 * 109.46687 * 179.97438 * 16 14 12 18 18 C 1.52998 * 109.46766 * 180.02562 * 17 16 14 19 19 H 1.09005 * 109.47993 * 305.00130 * 18 17 16 20 20 C 1.53089 * 109.48007 * 184.98194 * 18 17 16 21 21 C 1.53175 * 109.16420 * 182.42269 * 20 18 17 22 22 C 1.53176 * 109.04974 * 56.96058 * 21 20 18 23 23 C 1.53096 * 109.16045 * 303.02517 * 22 21 20 24 24 O 1.42906 * 109.48197 * 65.02459 * 18 17 16 25 25 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 27 27 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 28 28 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 29 29 H 1.09001 * 109.47422 * 89.99467 * 13 12 2 30 30 H 1.08999 * 109.47640 * 210.00702 * 13 12 2 31 31 H 1.09007 * 109.46983 * 330.00324 * 13 12 2 32 32 H 1.08993 * 109.47234 * 299.99875 * 16 14 12 33 33 H 1.08998 * 109.46956 * 60.00563 * 16 14 12 34 34 H 1.08995 * 109.47110 * 300.00475 * 17 16 14 35 35 H 1.08998 * 109.46908 * 60.00601 * 17 16 14 36 36 H 1.09002 * 109.51918 * 302.31314 * 20 18 17 37 37 H 1.08998 * 109.52888 * 62.50147 * 20 18 17 38 38 H 1.09006 * 109.53475 * 297.09566 * 21 20 18 39 39 H 1.09004 * 109.62144 * 176.88031 * 21 20 18 40 40 H 1.08997 * 109.52742 * 183.12202 * 22 21 20 41 41 H 1.09003 * 109.57526 * 62.96199 * 22 21 20 42 42 H 1.08990 * 109.48576 * 297.62605 * 23 22 21 43 43 H 1.09004 * 109.47959 * 177.58166 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.3411 -2.1690 -4.4082 10 1 2.4753 -0.1452 -5.1142 11 1 3.6277 -1.7556 -3.7145 12 7 2.0183 -0.6908 1.1960 13 6 1.6645 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0832 15 8 3.0859 1.1255 1.8916 16 6 3.2952 -0.7462 3.3139 17 6 4.1459 0.2152 4.1463 18 6 4.6560 -0.5062 5.3954 19 1 3.8120 -0.9254 5.9432 20 6 5.4024 0.4872 6.2897 21 6 5.9617 -0.2545 7.5076 22 6 6.8635 -1.3957 7.0272 23 6 6.0604 -2.3164 6.1047 24 8 5.5433 -1.5579 5.0094 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.6955 1.1524 -3.4842 29 1 2.4158 -2.7378 0.9713 30 1 1.6239 -2.2855 2.4999 31 1 0.6905 -2.3004 0.9844 32 1 2.4473 -1.0884 3.9071 33 1 3.9007 -1.6028 3.0174 34 1 4.9938 0.5571 3.5528 35 1 3.5409 1.0720 4.4428 36 1 6.2220 0.9371 5.7294 37 1 4.7158 1.2662 6.6211 38 1 5.1393 -0.6624 8.0953 39 1 6.5417 0.4348 8.1214 40 1 7.2217 -1.9632 7.8861 41 1 7.7133 -0.9850 6.4820 42 1 5.2349 -2.7593 6.6618 43 1 6.7086 -3.1065 5.7255 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069274007.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:53 Heat of formation + Delta-G solvation = -124.180126 kcal Electronic energy + Delta-G solvation = -21204.666305 eV Core-core repulsion = 18055.266293 eV Total energy + Delta-G solvation = -3149.400013 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87585 -40.15065 -37.18499 -35.03343 -34.62071 -34.49371 -31.81446 -30.46874 -27.59468 -27.30184 -26.67717 -24.83523 -23.23129 -22.01794 -21.14915 -19.75002 -18.51900 -17.88022 -17.47104 -17.13900 -16.66272 -16.34799 -16.05183 -15.51285 -15.31213 -14.79853 -14.61219 -14.39829 -14.27230 -13.68620 -13.54824 -13.46094 -13.17532 -13.04039 -12.91883 -12.71180 -12.57476 -12.56115 -12.18608 -12.14524 -12.10309 -12.03321 -11.79695 -11.53982 -11.18528 -11.12469 -10.63683 -10.45933 -10.27585 -9.29774 -8.14718 -6.31703 1.40091 1.42085 1.52148 1.86085 2.34325 2.52749 2.90395 3.12494 3.65798 3.81943 3.97191 4.00600 4.08630 4.16893 4.34315 4.38931 4.42839 4.53815 4.63542 4.68690 4.73856 4.79008 4.83646 4.88952 4.91019 4.97293 5.03214 5.05303 5.09939 5.12808 5.17339 5.23291 5.31634 5.44448 5.46837 5.64515 5.68980 6.05484 6.17227 6.40756 6.76638 6.88011 7.33265 7.52214 8.89413 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032897 B = 0.003672 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.935935 B = 7622.422652 C = 7871.480855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.006 0.994 4 C -0.540 4.540 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.604 5.604 13 C 0.084 3.916 14 C 0.489 3.511 15 O -0.609 6.609 16 C -0.118 4.118 17 C -0.092 4.092 18 C 0.097 3.903 19 H 0.077 0.923 20 C -0.153 4.153 21 C -0.120 4.120 22 C -0.156 4.156 23 C 0.053 3.947 24 O -0.402 6.402 25 H 0.048 0.952 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.265 0.735 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.118 0.882 33 H 0.103 0.897 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 -8.744 20.682 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.157 3.843 3 H 0.024 0.976 4 C -0.578 4.578 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.334 5.334 13 C -0.058 4.058 14 C 0.279 3.721 15 O -0.492 6.492 16 C -0.158 4.158 17 C -0.130 4.130 18 C 0.040 3.960 19 H 0.095 0.905 20 C -0.190 4.190 21 C -0.157 4.157 22 C -0.193 4.193 23 C -0.023 4.023 24 O -0.321 6.321 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.136 0.864 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.531 -8.097 20.242 22.759 hybrid contribution 0.213 0.177 -1.096 1.130 sum 6.744 -7.920 19.146 21.790 Atomic orbital electron populations 1.21875 0.97083 1.00148 0.99984 1.18519 0.91707 0.92140 0.81959 0.97580 1.21597 1.31799 1.13072 0.91342 0.92376 1.25759 0.95083 0.95677 1.02073 1.70025 1.37147 1.24129 1.24421 0.85437 0.78825 0.78287 0.78362 1.19077 1.21035 1.19699 1.48285 1.49215 1.13459 1.22491 1.21800 1.01311 0.80328 1.02385 1.21591 0.77949 0.86771 0.85785 1.90600 1.60175 1.19890 1.78545 1.21608 1.01541 0.99645 0.92981 1.21307 0.98879 0.97496 0.95305 1.22103 0.91914 0.87797 0.94211 0.90510 1.22209 1.00798 0.98795 0.97238 1.21595 0.99772 0.97622 0.96718 1.22194 0.98846 0.97935 1.00357 1.22755 0.97644 0.93554 0.88356 1.87950 1.64150 1.46558 1.33488 0.93289 0.96035 0.91394 0.92627 0.92989 0.88470 0.91165 0.86399 0.87870 0.93331 0.90367 0.92498 0.90036 0.90662 0.90700 0.89072 0.92270 0.91906 0.88290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.56 8.95 71.98 0.64 -5.92 16 2 C 0.26 14.02 2.64 44.25 0.12 14.13 16 3 H 0.01 0.40 6.90 -2.39 -0.02 0.39 16 4 C -0.54 -30.44 8.37 25.60 0.21 -30.22 16 5 H 0.06 3.20 7.65 -2.91 -0.02 3.18 16 6 C 0.01 0.76 5.30 84.65 0.45 1.21 16 7 N -0.92 -54.22 11.30 21.45 0.24 -53.98 16 8 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 9 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 N -0.60 -26.58 2.75 -826.79 -2.28 -28.86 16 13 C 0.08 2.72 9.48 127.77 1.21 3.93 16 14 C 0.49 21.01 7.67 87.66 0.67 21.69 16 15 O -0.61 -32.22 15.31 -3.03 -0.05 -32.27 16 16 C -0.12 -3.47 4.15 29.85 0.12 -3.34 16 17 C -0.09 -2.59 4.21 30.60 0.13 -2.46 16 18 C 0.10 2.06 2.64 30.62 0.08 2.14 16 19 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 20 C -0.15 -2.81 5.42 30.68 0.17 -2.65 16 21 C -0.12 -1.64 6.03 30.71 0.19 -1.45 16 22 C -0.16 -2.12 6.14 30.69 0.19 -1.94 16 23 C 0.05 0.84 6.84 72.01 0.49 1.33 16 24 O -0.40 -9.34 9.94 -148.98 -1.48 -10.82 16 25 H 0.05 2.18 6.66 -2.39 -0.02 2.17 16 26 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 3.73 6.05 -2.39 -0.01 3.71 16 28 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.10 2.26 6.44 -2.39 -0.02 2.24 16 31 H 0.07 2.29 6.43 -2.38 -0.02 2.27 16 32 H 0.12 2.63 7.40 -2.39 -0.02 2.61 16 33 H 0.10 2.89 7.79 -2.39 -0.02 2.87 16 34 H 0.05 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.08 2.24 8.10 -2.39 -0.02 2.22 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -72.57 337.39 4.10 -68.47 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: 0.96 Total: 14.84 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 4.67 Total: -3.56 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -2.03 Total: -82.84 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.53 Total: -43.09 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -72.57 4.10 -68.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069274007.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.712 kcal (2) G-P(sol) polarization free energy of solvation -72.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds