Wall clock time and date at job start Mon Mar 30 2020 01:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.46960 * 2 1 4 4 C 1.46498 * 120.00328 * 269.99654 * 3 2 1 5 5 C 1.50704 * 109.47457 * 270.00433 * 4 3 2 6 6 H 1.07997 * 119.99700 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00203 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47056 * 60.00143 * 9 7 5 11 11 H 1.48491 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47172 * 300.00442 * 9 7 5 13 13 C 1.34777 * 119.99911 * 90.00106 * 3 2 1 14 14 O 1.21286 * 120.00229 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00006 * 359.97438 * 13 3 2 16 16 C 1.53003 * 109.47089 * 180.02562 * 15 13 3 17 17 C 1.53002 * 109.47216 * 179.97438 * 16 15 13 18 18 H 1.08998 * 109.48768 * 305.03084 * 17 16 15 19 19 C 1.53091 * 109.48142 * 185.00050 * 17 16 15 20 20 C 1.53176 * 109.21206 * 182.43908 * 19 17 16 21 21 C 1.53174 * 109.03724 * 56.94941 * 20 19 17 22 22 C 1.53084 * 109.16456 * 303.01556 * 21 20 19 23 23 O 1.42906 * 109.41372 * 57.61236 * 22 21 20 24 24 H 1.08999 * 109.46967 * 299.99795 * 1 2 3 25 25 H 1.09000 * 109.47234 * 60.00479 * 1 2 3 26 26 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47246 * 239.99830 * 2 1 3 28 28 H 1.09008 * 109.47054 * 120.00159 * 2 1 3 29 29 H 1.09002 * 109.46815 * 29.99944 * 4 3 2 30 30 H 1.08991 * 109.47239 * 150.00086 * 4 3 2 31 31 H 0.97001 * 119.99249 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47677 * 60.00118 * 15 13 3 33 33 H 1.09005 * 109.46830 * 299.99871 * 15 13 3 34 34 H 1.09002 * 109.47307 * 59.99787 * 16 15 13 35 35 H 1.09005 * 109.47089 * 299.99603 * 16 15 13 36 36 H 1.09002 * 109.52401 * 62.50061 * 19 17 16 37 37 H 1.09004 * 109.52068 * 302.37706 * 19 17 16 38 38 H 1.09004 * 109.53956 * 176.81728 * 20 19 17 39 39 H 1.08995 * 109.54545 * 297.07504 * 20 19 17 40 40 H 1.09007 * 109.52410 * 62.92341 * 21 20 19 41 41 H 1.09000 * 109.52423 * 183.04692 * 21 20 19 42 42 H 1.09004 * 109.48326 * 177.59400 * 22 21 20 43 43 H 1.09000 * 109.48607 * 297.61643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1492 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0967 -3.4168 10 1 6.1418 0.6401 -3.5936 11 1 6.1611 2.7967 -4.7028 12 1 6.8408 2.6210 -2.3819 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9912 1.3063 2.4723 16 6 2.3221 2.2438 3.6352 17 6 2.0660 1.5230 4.9603 18 1 1.0417 1.1508 4.9797 19 6 2.2769 2.4984 6.1212 20 6 2.0786 1.7555 7.4460 21 6 3.0441 0.5677 7.5021 22 6 2.8026 -0.3340 6.2888 23 8 2.9729 0.4262 5.0907 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1383 31 1 3.6753 3.5163 -4.4438 32 1 2.6211 0.4185 2.5303 33 1 0.9431 1.0125 2.5298 34 1 1.6920 3.1313 3.5771 35 1 3.3702 2.5380 3.5779 36 1 1.5557 3.3125 6.0486 37 1 3.2882 2.9028 6.0781 38 1 2.2828 2.4310 8.2769 39 1 1.0523 1.3947 7.5117 40 1 4.0713 0.9321 7.4864 41 1 2.8724 0.0016 8.4177 42 1 3.5157 -1.1583 6.3007 43 1 1.7880 -0.7305 6.3268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069311318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:00 Heat of formation + Delta-G solvation = -109.913151 kcal Electronic energy + Delta-G solvation = -21202.255816 eV Core-core repulsion = 18053.474466 eV Total energy + Delta-G solvation = -3148.781350 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.65934 -38.82126 -35.24971 -33.86735 -33.68489 -32.69574 -30.22513 -29.89529 -27.26003 -25.54290 -24.03640 -22.94931 -22.55181 -21.09501 -20.41749 -18.09584 -16.59707 -16.54511 -16.28857 -15.74575 -15.38288 -14.79177 -14.67116 -14.57948 -14.21359 -13.68945 -13.30246 -13.27087 -12.92262 -12.77291 -12.17597 -12.05082 -11.92583 -11.78971 -11.47928 -11.30803 -11.22487 -11.08875 -10.88790 -10.84721 -10.75582 -10.54382 -10.44911 -10.28172 -10.06545 -9.58104 -9.50601 -8.75447 -8.37692 -7.56449 -5.98667 -4.03017 3.35962 3.39942 3.43079 3.57514 3.71578 4.02895 4.48965 4.58438 4.61379 4.68674 4.80308 5.04033 5.08513 5.26265 5.29557 5.35048 5.40095 5.44746 5.50110 5.55546 5.59156 5.67122 5.71360 5.77758 5.80762 5.85968 5.96826 5.98534 6.08422 6.15339 6.30161 6.32865 6.48624 6.56403 7.15634 7.21152 7.52039 7.64858 7.98622 8.30879 8.54286 8.97350 9.21671 9.62049 11.09364 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.004004 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.773943 B = 6991.318495 C = 7384.710268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.246 3.754 5 C -0.525 4.525 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.504 3.496 14 O -0.546 6.546 15 C -0.136 4.136 16 C -0.095 4.095 17 C 0.091 3.909 18 H 0.056 0.944 19 C -0.152 4.152 20 C -0.122 4.122 21 C -0.157 4.157 22 C 0.061 3.939 23 O -0.375 6.375 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -7.865 19.705 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.127 3.873 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.424 6.424 15 C -0.177 4.177 16 C -0.133 4.133 17 C 0.034 3.966 18 H 0.074 0.926 19 C -0.189 4.189 20 C -0.160 4.160 21 C -0.195 4.195 22 C -0.016 4.016 23 O -0.294 6.294 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.109 0.891 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.619 -7.188 19.355 21.397 hybrid contribution 0.743 -0.202 -0.164 0.787 sum -4.876 -7.389 19.191 21.134 Atomic orbital electron populations 1.22215 0.96980 1.01266 1.02202 1.21395 0.93357 0.84346 1.02652 1.48257 1.63816 1.13205 1.07836 1.19230 0.96119 0.93607 0.78353 1.21432 0.97018 1.31779 1.06145 0.92535 1.24935 0.97811 0.94976 0.96417 1.69930 1.35702 1.33549 1.14381 0.86566 0.84906 0.78226 0.77769 1.20264 1.21215 1.20188 1.20420 0.78266 0.86918 0.85308 1.90652 1.46032 1.18338 1.87405 1.21666 1.02720 1.00190 0.93082 1.21360 1.04095 0.97432 0.90369 1.22197 0.92576 0.86826 0.95038 0.92594 1.22213 1.03331 0.98760 0.94627 1.21587 0.99346 0.97294 0.97740 1.22197 1.00724 0.97712 0.98865 1.22523 1.00938 0.93647 0.84535 1.87992 1.58519 1.43026 1.39875 0.93099 0.92168 0.92296 0.90166 0.91580 0.95190 0.94009 0.92744 0.88909 0.90073 0.89949 0.90292 0.90780 0.90822 0.91633 0.91979 0.91050 0.91206 0.89076 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 10.24 37.16 0.38 -1.95 16 2 C 0.11 1.78 5.93 -4.05 -0.02 1.76 16 3 N -0.60 -13.09 2.46 -175.06 -0.43 -13.52 16 4 C 0.25 6.62 5.16 -5.19 -0.03 6.59 16 5 C -0.52 -15.31 9.39 -34.44 -0.32 -15.64 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.50 10.82 7.67 -10.99 -0.08 10.74 16 14 O -0.55 -14.12 15.56 5.55 0.09 -14.04 16 15 C -0.14 -2.13 4.15 -27.88 -0.12 -2.25 16 16 C -0.09 -1.38 4.21 -26.73 -0.11 -1.49 16 17 C 0.09 1.07 2.65 -26.68 -0.07 0.99 16 18 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 19 C -0.15 -1.53 5.42 -26.59 -0.14 -1.67 16 20 C -0.12 -1.01 6.03 -26.55 -0.16 -1.17 16 21 C -0.16 -1.28 6.14 -26.60 -0.16 -1.44 16 22 C 0.06 0.56 6.84 37.20 0.25 0.82 16 23 O -0.38 -4.74 9.95 -35.23 -0.35 -5.09 16 24 H 0.05 0.67 7.22 -51.93 -0.37 0.29 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 28 H 0.07 0.94 6.44 -51.92 -0.33 0.61 16 29 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.09 1.41 7.09 -51.93 -0.37 1.04 16 33 H 0.08 1.07 7.18 -51.93 -0.37 0.70 16 34 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 344.77 15.07 5.20 5.20 Total: -1.00 -33.66 344.77 -8.18 -41.84 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.71 Total: -2.24 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -0.69 Total: -3.04 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.31 Total: -39.97 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.26 Total: -19.13 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.66 -8.18 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069311318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.073 kcal (2) G-P(sol) polarization free energy of solvation -33.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds