Wall clock time and date at job start Mon Mar 30 2020 01:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46495 * 109.46960 * 2 1 4 4 C 1.46498 * 120.00328 * 269.99654 * 3 2 1 5 5 C 1.50704 * 109.47457 * 270.00433 * 4 3 2 6 6 H 1.07997 * 119.99700 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00203 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99712 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47056 * 60.00143 * 9 7 5 11 11 H 1.48491 * 109.47225 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.47172 * 300.00442 * 9 7 5 13 13 C 1.34777 * 119.99911 * 90.00106 * 3 2 1 14 14 O 1.21286 * 120.00229 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00006 * 359.97438 * 13 3 2 16 16 C 1.53003 * 109.47089 * 180.02562 * 15 13 3 17 17 C 1.53002 * 109.47216 * 179.97438 * 16 15 13 18 18 H 1.08998 * 109.48768 * 305.03084 * 17 16 15 19 19 C 1.53091 * 109.48142 * 185.00050 * 17 16 15 20 20 C 1.53176 * 109.21206 * 182.43908 * 19 17 16 21 21 C 1.53174 * 109.03724 * 56.94941 * 20 19 17 22 22 C 1.53084 * 109.16456 * 303.01556 * 21 20 19 23 23 O 1.42906 * 109.41372 * 57.61236 * 22 21 20 24 24 H 1.08999 * 109.46967 * 299.99795 * 1 2 3 25 25 H 1.09000 * 109.47234 * 60.00479 * 1 2 3 26 26 H 1.09000 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47246 * 239.99830 * 2 1 3 28 28 H 1.09008 * 109.47054 * 120.00159 * 2 1 3 29 29 H 1.09002 * 109.46815 * 29.99944 * 4 3 2 30 30 H 1.08991 * 109.47239 * 150.00086 * 4 3 2 31 31 H 0.97001 * 119.99249 * 179.97438 * 8 7 5 32 32 H 1.09001 * 109.47677 * 60.00118 * 15 13 3 33 33 H 1.09005 * 109.46830 * 299.99871 * 15 13 3 34 34 H 1.09002 * 109.47307 * 59.99787 * 16 15 13 35 35 H 1.09005 * 109.47089 * 299.99603 * 16 15 13 36 36 H 1.09002 * 109.52401 * 62.50061 * 19 17 16 37 37 H 1.09004 * 109.52068 * 302.37706 * 19 17 16 38 38 H 1.09004 * 109.53956 * 176.81728 * 20 19 17 39 39 H 1.08995 * 109.54545 * 297.07504 * 20 19 17 40 40 H 1.09007 * 109.52410 * 62.92341 * 21 20 19 41 41 H 1.09000 * 109.52423 * 183.04692 * 21 20 19 42 42 H 1.09004 * 109.48326 * 177.59400 * 22 21 20 43 43 H 1.09000 * 109.48607 * 297.61643 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7037 6 1 4.3428 1.2309 -1.0958 7 6 4.1492 2.3897 -2.8779 8 7 3.3491 3.1258 -3.6180 9 14 5.9136 2.0967 -3.4168 10 1 6.1418 0.6401 -3.5936 11 1 6.1611 2.7967 -4.7028 12 1 6.8408 2.6210 -2.3819 13 6 2.2429 2.0165 1.1672 14 8 2.6476 3.1599 1.1673 15 6 1.9912 1.3063 2.4723 16 6 2.3221 2.2438 3.6352 17 6 2.0660 1.5230 4.9603 18 1 1.0417 1.1508 4.9797 19 6 2.2769 2.4984 6.1212 20 6 2.0786 1.7555 7.4460 21 6 3.0441 0.5677 7.5021 22 6 2.8026 -0.3340 6.2888 23 8 2.9729 0.4262 5.0907 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.5817 1.6877 -2.0284 30 1 2.0955 3.1410 -1.1383 31 1 3.6753 3.5163 -4.4438 32 1 2.6211 0.4185 2.5303 33 1 0.9431 1.0125 2.5298 34 1 1.6920 3.1313 3.5771 35 1 3.3702 2.5380 3.5779 36 1 1.5557 3.3125 6.0486 37 1 3.2882 2.9028 6.0781 38 1 2.2828 2.4310 8.2769 39 1 1.0523 1.3947 7.5117 40 1 4.0713 0.9321 7.4864 41 1 2.8724 0.0016 8.4177 42 1 3.5157 -1.1583 6.3007 43 1 1.7880 -0.7305 6.3268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069311318.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:59 Heat of formation + Delta-G solvation = -131.091147 kcal Electronic energy + Delta-G solvation = -21203.174163 eV Core-core repulsion = 18053.474466 eV Total energy + Delta-G solvation = -3149.699697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.87660 -40.13605 -36.97627 -35.13024 -34.66078 -34.49322 -31.69082 -31.06558 -29.07662 -26.77089 -25.13088 -24.52227 -23.89268 -22.30671 -21.15834 -19.72773 -18.62822 -17.91282 -17.47161 -17.15687 -16.70411 -16.33102 -16.04896 -15.47760 -15.37331 -14.72520 -14.67867 -14.54412 -14.45448 -13.92208 -13.55252 -13.53432 -13.22645 -13.15170 -13.00085 -12.76895 -12.63361 -12.42802 -12.23518 -12.13183 -12.03525 -11.86305 -11.75238 -11.70362 -11.53397 -11.13188 -10.64904 -10.55000 -10.27774 -9.41629 -8.22817 -6.38037 1.35120 1.39941 1.47274 1.88188 2.32281 2.47363 2.89959 3.06069 3.62919 3.81074 3.96697 4.00222 4.07895 4.15441 4.17364 4.34879 4.37519 4.45279 4.49790 4.62818 4.64641 4.71364 4.78536 4.89116 4.95931 4.98671 5.00368 5.06137 5.07152 5.12491 5.17061 5.22850 5.24265 5.31366 5.41271 5.44562 5.58421 5.88133 6.07145 6.40957 6.69715 6.83809 7.28103 7.52523 8.84016 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.024241 B = 0.004004 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.773943 B = 6991.318495 C = 7384.710268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.099 3.901 3 N -0.605 5.605 4 C 0.262 3.738 5 C -0.546 4.546 6 H 0.051 0.949 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.276 1.276 12 H -0.279 1.279 13 C 0.492 3.508 14 O -0.602 6.602 15 C -0.118 4.118 16 C -0.093 4.093 17 C 0.098 3.902 18 H 0.078 0.922 19 C -0.153 4.153 20 C -0.119 4.119 21 C -0.156 4.156 22 C 0.053 3.947 23 O -0.402 6.402 24 H 0.062 0.938 25 H 0.037 0.963 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.021 0.979 30 H -0.005 1.005 31 H 0.268 0.732 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.394 -10.205 21.496 24.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.140 3.860 5 C -0.584 4.584 6 H 0.069 0.931 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.201 1.201 12 H -0.205 1.205 13 C 0.282 3.718 14 O -0.484 6.484 15 C -0.157 4.157 16 C -0.131 4.131 17 C 0.041 3.959 18 H 0.095 0.905 19 C -0.191 4.191 20 C -0.157 4.157 21 C -0.193 4.193 22 C -0.023 4.023 23 O -0.322 6.322 24 H 0.081 0.919 25 H 0.056 0.944 26 H 0.114 0.886 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.039 0.961 30 H 0.013 0.987 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.135 0.865 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.118 0.882 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.075 -9.581 21.165 24.014 hybrid contribution 0.854 0.526 -0.716 1.232 sum -5.222 -9.055 20.449 22.966 Atomic orbital electron populations 1.22144 0.94401 1.03515 1.01709 1.21738 0.95450 0.81349 1.03744 1.48322 1.63872 1.15114 1.06311 1.18672 0.95182 0.91452 0.80652 1.21707 0.97995 1.32140 1.06580 0.93070 1.25877 1.02511 0.94420 0.96367 1.70049 1.37842 1.34140 1.14805 0.85465 0.78873 0.79094 0.77369 1.18371 1.20097 1.20451 1.21539 0.76846 0.86525 0.86913 1.90618 1.48458 1.21045 1.88320 1.21630 1.05003 0.99726 0.89389 1.21314 1.02046 0.97664 0.92033 1.22090 0.93392 0.86949 0.93481 0.90457 1.22215 1.02565 0.98933 0.95383 1.21594 1.00153 0.97294 0.96639 1.22194 0.99993 0.97746 0.99416 1.22754 1.02212 0.93670 0.83644 1.87944 1.59090 1.43423 1.41704 0.91895 0.94399 0.88585 0.91265 0.88281 0.96110 0.98726 0.92366 0.87741 0.86535 0.90438 0.93392 0.90081 0.92560 0.90725 0.90599 0.92324 0.89030 0.88248 0.91843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 10.24 71.98 0.74 -3.31 16 2 C 0.10 3.18 5.93 86.38 0.51 3.69 16 3 N -0.61 -26.90 2.46 -826.16 -2.03 -28.93 16 4 C 0.26 14.77 5.16 85.63 0.44 15.21 16 5 C -0.55 -32.80 9.39 25.60 0.24 -32.56 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.42 5.46 84.65 0.46 0.89 16 8 N -0.93 -57.75 13.29 21.45 0.28 -57.47 16 9 Si 0.97 46.27 29.54 68.60 2.03 48.30 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 C 0.49 21.53 7.67 87.66 0.67 22.20 16 14 O -0.60 -32.78 15.56 -3.05 -0.05 -32.82 16 15 C -0.12 -3.51 4.15 29.85 0.12 -3.39 16 16 C -0.09 -2.67 4.21 30.60 0.13 -2.54 16 17 C 0.10 2.11 2.65 30.63 0.08 2.19 16 18 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 19 C -0.15 -2.87 5.42 30.68 0.17 -2.71 16 20 C -0.12 -1.65 6.03 30.71 0.19 -1.47 16 21 C -0.16 -2.14 6.14 30.68 0.19 -1.95 16 22 C 0.05 0.84 6.84 72.01 0.49 1.33 16 23 O -0.40 -9.36 9.95 -148.98 -1.48 -10.84 16 24 H 0.06 1.45 7.22 -2.39 -0.02 1.43 16 25 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 28 H 0.10 2.52 6.44 -2.38 -0.02 2.50 16 29 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 30 H -0.01 -0.35 7.42 -2.39 -0.02 -0.37 16 31 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.10 2.93 7.09 -2.39 -0.02 2.91 16 33 H 0.12 2.67 7.18 -2.38 -0.02 2.65 16 34 H 0.08 2.27 8.10 -2.39 -0.02 2.25 16 35 H 0.05 1.66 8.10 -2.38 -0.02 1.64 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -77.07 344.77 4.14 -72.94 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.95 Total: 11.24 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 4.43 Total: -2.41 kcal Atomic # 7 Polarization: -84.65 SS G_CDS: -1.74 Total: -86.40 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.53 Total: -43.67 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -77.07 4.14 -72.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069311318.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.156 kcal (2) G-P(sol) polarization free energy of solvation -77.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds