Wall clock time and date at job start Mon Mar 30 2020 01:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47158 * 2 1 4 4 C 1.34234 * 116.99895 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99642 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99780 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46558 * 31.18458 * 6 4 3 8 8 C 1.53041 * 109.46543 * 271.21160 * 6 4 3 9 9 C 1.53119 * 109.27689 * 180.80392 * 8 6 4 10 10 C 1.53126 * 109.15938 * 57.65892 * 9 8 6 11 11 C 1.53032 * 109.27887 * 302.34277 * 10 9 8 12 12 N 1.46852 * 109.45841 * 151.16075 * 6 4 3 13 13 C 1.46898 * 110.99877 * 305.85212 * 12 6 4 14 14 C 1.53000 * 109.46922 * 164.11737 * 13 12 6 15 15 C 1.52998 * 109.47240 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47287 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47317 * 60.00149 * 20 18 16 22 22 H 1.48503 * 109.46893 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47272 * 300.00323 * 20 18 16 24 24 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46764 * 299.99810 * 1 2 3 26 26 H 1.08997 * 109.46791 * 59.99660 * 1 2 3 27 27 H 1.09003 * 109.47145 * 239.99807 * 2 1 3 28 28 H 1.09007 * 109.46989 * 120.00387 * 2 1 3 29 29 H 1.08999 * 109.50444 * 300.74729 * 8 6 4 30 30 H 1.08996 * 109.49763 * 60.82722 * 8 6 4 31 31 H 1.09000 * 109.52138 * 177.56020 * 9 8 6 32 32 H 1.08999 * 109.52919 * 297.68879 * 9 8 6 33 33 H 1.09002 * 109.50369 * 62.28243 * 10 9 8 34 34 H 1.08992 * 109.50430 * 182.39882 * 10 9 8 35 35 H 1.09002 * 109.46120 * 299.16845 * 11 10 9 36 36 H 1.08994 * 109.46653 * 179.19420 * 11 10 9 37 37 H 1.08999 * 109.47064 * 44.12106 * 13 12 6 38 38 H 1.08994 * 109.47736 * 284.11502 * 13 12 6 39 39 H 1.09000 * 109.47451 * 60.00464 * 14 13 12 40 40 H 1.09005 * 109.47175 * 300.00373 * 14 13 12 41 41 H 1.08999 * 109.47204 * 60.00088 * 15 14 13 42 42 H 1.08996 * 109.46860 * 300.00000 * 15 14 13 43 43 H 0.96998 * 120.00274 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.2469 3.6093 0.5314 8 6 4.0882 3.4194 -1.4428 9 6 4.6922 4.8264 -1.4388 10 6 6.0302 4.7968 -0.6947 11 6 5.8065 4.2748 0.7264 12 7 5.2283 2.9262 0.6685 13 6 5.1281 2.3383 2.0110 14 6 6.5269 1.9789 2.5160 15 6 6.4226 1.3661 3.9140 16 6 7.8003 1.0115 4.4112 17 1 8.6641 1.2044 3.7921 18 6 7.9583 0.4418 5.6568 19 7 6.9067 0.2073 6.4108 20 14 9.6661 0.0029 6.2733 21 1 10.5018 1.2291 6.3310 22 1 9.5648 -0.5920 7.6301 23 1 10.2894 -0.9777 5.3485 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 4.7512 2.7403 -1.9788 30 1 3.1155 3.4417 -1.9341 31 1 4.8534 5.1565 -2.4650 32 1 4.0108 5.5140 -0.9378 33 1 6.7237 4.1393 -1.2189 34 1 6.4448 5.8039 -0.6514 35 1 5.1237 4.9404 1.2545 36 1 6.7594 4.2390 1.2543 37 1 4.5147 1.4383 1.9687 38 1 4.6707 3.0581 2.6897 39 1 7.1403 2.8789 2.5584 40 1 6.9844 1.2591 1.8373 41 1 5.8093 0.4660 3.8713 42 1 5.9649 2.0856 4.5929 43 1 7.0177 -0.1938 7.2869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071016567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:12 Heat of formation + Delta-G solvation = -105.051456 kcal Electronic energy + Delta-G solvation = -21347.910331 eV Core-core repulsion = 18199.339800 eV Total energy + Delta-G solvation = -3148.570531 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74666 -38.69356 -36.39609 -34.76234 -32.93944 -32.10310 -31.13546 -30.66787 -26.80270 -25.04385 -24.04062 -22.99791 -22.09151 -20.92076 -19.85693 -19.66244 -17.70975 -16.67441 -16.54014 -16.11193 -15.29500 -14.92855 -14.53193 -14.40833 -14.30447 -13.83220 -13.36675 -13.30910 -13.12922 -12.93230 -12.64321 -12.20421 -11.99188 -11.74486 -11.68904 -11.40050 -11.36553 -11.01739 -10.88516 -10.70758 -10.65974 -10.53794 -10.46883 -10.34681 -9.99048 -9.50145 -9.26054 -9.01236 -8.27856 -8.13728 -5.93337 -3.94987 2.29715 2.57172 3.38197 3.41765 3.45003 3.97766 4.52166 4.56301 4.66453 4.81108 4.83874 4.87115 4.99251 5.08010 5.16159 5.17252 5.42310 5.46169 5.55710 5.57077 5.60683 5.64248 5.71398 5.78558 5.81110 5.84582 5.97783 6.03236 6.11780 6.28872 6.34214 6.48569 6.76016 6.78326 7.15389 7.29080 7.34538 7.75529 7.90794 7.91668 8.07463 8.51048 9.11796 9.68392 11.18291 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.004687 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.016572 B = 5972.294437 C = 7373.323522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.364 6.364 4 C 0.461 3.539 5 O -0.476 6.476 6 C 0.098 3.902 7 H 0.068 0.932 8 C -0.106 4.106 9 C -0.117 4.117 10 C -0.120 4.120 11 C 0.056 3.944 12 N -0.520 5.520 13 C 0.050 3.950 14 C -0.098 4.098 15 C 0.023 3.977 16 C -0.516 4.516 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.034 0.966 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.030 0.970 39 H 0.046 0.954 40 H 0.058 0.942 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 7.632 -16.517 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.282 6.282 4 C 0.302 3.698 5 O -0.360 6.360 6 C -0.012 4.012 7 H 0.086 0.914 8 C -0.144 4.144 9 C -0.154 4.154 10 C -0.158 4.158 11 C -0.071 4.071 12 N -0.246 5.246 13 C -0.077 4.077 14 C -0.136 4.136 15 C -0.015 4.015 16 C -0.555 4.555 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.720 3.280 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.093 6.928 -16.618 21.147 hybrid contribution 0.324 -0.053 1.023 1.075 sum -10.769 6.875 -15.595 20.160 Atomic orbital electron populations 1.21796 0.92723 1.02907 1.03363 1.23022 0.95208 0.80306 1.02840 1.86484 1.24815 1.32442 1.84430 1.23536 0.80428 0.92706 0.73143 1.90721 1.60068 1.42514 1.42735 1.21203 0.91848 0.89788 0.98376 0.91402 1.21558 1.01840 0.97822 0.93176 1.21559 0.97231 0.95756 1.00873 1.21644 0.97394 1.01004 0.95721 1.22173 1.00498 0.87507 0.96906 1.61864 1.20068 1.21524 1.21164 1.22443 1.01094 0.98196 0.85922 1.21575 0.92705 1.00091 0.99233 1.19063 0.97101 0.95636 0.89709 1.21215 0.93060 1.40130 1.01061 0.92701 1.25023 0.96672 0.95886 0.96918 1.69959 1.28982 1.44087 1.10701 0.86657 0.84789 0.78730 0.77817 1.20270 1.21343 1.20229 0.90276 0.91445 0.91660 0.91303 0.90946 0.90245 0.90885 0.91287 0.91932 0.90758 0.91319 0.94824 0.89189 0.91165 0.95156 0.93482 0.92351 0.96722 0.96923 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 10.29 37.16 0.38 -0.86 16 2 C 0.06 0.69 6.19 37.16 0.23 0.92 16 3 O -0.36 -4.98 10.22 -39.27 -0.40 -5.38 16 4 C 0.46 7.23 5.82 36.00 0.21 7.44 16 5 O -0.48 -9.11 15.12 -18.75 -0.28 -9.39 16 6 C 0.10 1.35 2.34 -68.87 -0.16 1.18 16 7 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 8 C -0.11 -1.15 5.36 -26.65 -0.14 -1.29 16 9 C -0.12 -1.07 6.00 -26.60 -0.16 -1.23 16 10 C -0.12 -1.26 6.09 -26.65 -0.16 -1.43 16 11 C 0.06 0.76 5.30 -3.83 -0.02 0.74 16 12 N -0.52 -8.35 4.21 -228.08 -0.96 -9.31 16 13 C 0.05 0.96 4.60 -3.83 -0.02 0.94 16 14 C -0.10 -2.20 5.20 -26.73 -0.14 -2.33 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -15.25 9.11 -34.44 -0.31 -15.56 16 17 H 0.05 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -27.81 13.29 55.43 0.74 -27.08 16 20 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 28 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 1.30 6.49 -51.93 -0.34 0.97 16 37 H 0.07 1.46 5.68 -51.93 -0.30 1.16 16 38 H 0.03 0.56 8.06 -51.93 -0.42 0.15 16 39 H 0.05 1.00 6.65 -51.93 -0.35 0.66 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 343.62 15.07 5.18 5.18 Total: -1.00 -33.23 343.62 -8.98 -42.22 By element: Atomic # 1 Polarization: 3.61 SS G_CDS: -7.70 Total: -4.09 kcal Atomic # 6 Polarization: -8.91 SS G_CDS: -0.53 Total: -9.44 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.22 Total: -36.39 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.68 Total: -14.78 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.23 -8.98 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071016567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.836 kcal (2) G-P(sol) polarization free energy of solvation -33.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds