Wall clock time and date at job start Mon Mar 30 2020 01:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47158 * 2 1 4 4 C 1.34234 * 116.99895 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99642 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99780 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.46558 * 31.18458 * 6 4 3 8 8 C 1.53041 * 109.46543 * 271.21160 * 6 4 3 9 9 C 1.53119 * 109.27689 * 180.80392 * 8 6 4 10 10 C 1.53126 * 109.15938 * 57.65892 * 9 8 6 11 11 C 1.53032 * 109.27887 * 302.34277 * 10 9 8 12 12 N 1.46852 * 109.45841 * 151.16075 * 6 4 3 13 13 C 1.46898 * 110.99877 * 305.85212 * 12 6 4 14 14 C 1.53000 * 109.46922 * 164.11737 * 13 12 6 15 15 C 1.52998 * 109.47240 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47287 * 179.97438 * 15 14 13 17 17 H 1.08009 * 120.00169 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00174 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99868 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99926 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47317 * 60.00149 * 20 18 16 22 22 H 1.48503 * 109.46893 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47272 * 300.00323 * 20 18 16 24 24 H 1.08999 * 109.47354 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46764 * 299.99810 * 1 2 3 26 26 H 1.08997 * 109.46791 * 59.99660 * 1 2 3 27 27 H 1.09003 * 109.47145 * 239.99807 * 2 1 3 28 28 H 1.09007 * 109.46989 * 120.00387 * 2 1 3 29 29 H 1.08999 * 109.50444 * 300.74729 * 8 6 4 30 30 H 1.08996 * 109.49763 * 60.82722 * 8 6 4 31 31 H 1.09000 * 109.52138 * 177.56020 * 9 8 6 32 32 H 1.08999 * 109.52919 * 297.68879 * 9 8 6 33 33 H 1.09002 * 109.50369 * 62.28243 * 10 9 8 34 34 H 1.08992 * 109.50430 * 182.39882 * 10 9 8 35 35 H 1.09002 * 109.46120 * 299.16845 * 11 10 9 36 36 H 1.08994 * 109.46653 * 179.19420 * 11 10 9 37 37 H 1.08999 * 109.47064 * 44.12106 * 13 12 6 38 38 H 1.08994 * 109.47736 * 284.11502 * 13 12 6 39 39 H 1.09000 * 109.47451 * 60.00464 * 14 13 12 40 40 H 1.09005 * 109.47175 * 300.00373 * 14 13 12 41 41 H 1.08999 * 109.47204 * 60.00088 * 15 14 13 42 42 H 1.08996 * 109.46860 * 300.00000 * 15 14 13 43 43 H 0.96998 * 120.00274 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.2469 3.6093 0.5314 8 6 4.0882 3.4194 -1.4428 9 6 4.6922 4.8264 -1.4388 10 6 6.0302 4.7968 -0.6947 11 6 5.8065 4.2748 0.7264 12 7 5.2283 2.9262 0.6685 13 6 5.1281 2.3383 2.0110 14 6 6.5269 1.9789 2.5160 15 6 6.4226 1.3661 3.9140 16 6 7.8003 1.0115 4.4112 17 1 8.6641 1.2044 3.7921 18 6 7.9583 0.4418 5.6568 19 7 6.9067 0.2073 6.4108 20 14 9.6661 0.0029 6.2733 21 1 10.5018 1.2291 6.3310 22 1 9.5648 -0.5920 7.6301 23 1 10.2894 -0.9777 5.3485 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 4.7512 2.7403 -1.9788 30 1 3.1155 3.4417 -1.9341 31 1 4.8534 5.1565 -2.4650 32 1 4.0108 5.5140 -0.9378 33 1 6.7237 4.1393 -1.2189 34 1 6.4448 5.8039 -0.6514 35 1 5.1237 4.9404 1.2545 36 1 6.7594 4.2390 1.2543 37 1 4.5147 1.4383 1.9687 38 1 4.6707 3.0581 2.6897 39 1 7.1403 2.8789 2.5584 40 1 6.9844 1.2591 1.8373 41 1 5.8093 0.4660 3.8713 42 1 5.9649 2.0856 4.5929 43 1 7.0177 -0.1938 7.2869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071016567.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:11 Heat of formation + Delta-G solvation = -125.299519 kcal Electronic energy + Delta-G solvation = -21348.788353 eV Core-core repulsion = 18199.339800 eV Total energy + Delta-G solvation = -3149.448553 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.94216 -39.81490 -37.60314 -36.43033 -34.76727 -33.07852 -32.56333 -31.92225 -28.57490 -26.33616 -25.35381 -24.05550 -23.59306 -22.00485 -21.68217 -20.66236 -18.89004 -18.53010 -17.78282 -17.57678 -16.62344 -16.40860 -16.15518 -15.66705 -15.39442 -14.86445 -14.74352 -14.50010 -14.31497 -14.07206 -13.83300 -13.62680 -13.46642 -13.20500 -12.91874 -12.69112 -12.57762 -12.50780 -12.43233 -12.36427 -11.98457 -11.71283 -11.60700 -11.54858 -11.45888 -11.35454 -11.09119 -11.02473 -10.57184 -9.38811 -8.22023 -6.33807 1.07467 1.38019 1.42371 1.50142 1.50952 2.39416 2.76134 3.10650 3.56054 3.73643 3.89887 3.94963 3.96533 4.05291 4.09669 4.16668 4.25471 4.31283 4.35944 4.53289 4.60764 4.73213 4.78886 4.80706 4.89072 4.89452 4.92489 4.99541 5.07937 5.10298 5.15386 5.19514 5.28540 5.39662 5.45726 5.48899 5.68513 5.81010 5.89502 6.05912 6.23034 6.71213 6.81654 7.35307 8.90153 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016284 B = 0.004687 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.016572 B = 5972.294437 C = 7373.323522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.460 3.540 5 O -0.521 6.521 6 C 0.096 3.904 7 H 0.085 0.915 8 C -0.101 4.101 9 C -0.110 4.110 10 C -0.115 4.115 11 C 0.052 3.948 12 N -0.533 5.533 13 C 0.064 3.936 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.544 4.544 17 H 0.059 0.941 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.263 1.263 22 H -0.280 1.280 23 H -0.269 1.269 24 H 0.099 0.901 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.034 0.966 39 H 0.059 0.941 40 H 0.042 0.958 41 H -0.019 1.019 42 H -0.006 1.006 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 9.220 -17.788 23.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.303 3.697 5 O -0.408 6.408 6 C -0.014 4.014 7 H 0.103 0.897 8 C -0.139 4.139 9 C -0.148 4.148 10 C -0.153 4.153 11 C -0.075 4.075 12 N -0.259 5.259 13 C -0.063 4.063 14 C -0.119 4.119 15 C -0.009 4.009 16 C -0.582 4.582 17 H 0.078 0.922 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.188 1.188 22 H -0.205 1.205 23 H -0.194 1.194 24 H 0.118 0.882 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.060 0.940 41 H -0.001 1.001 42 H 0.012 0.988 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.106 8.543 -17.912 22.742 hybrid contribution 0.246 -0.576 1.418 1.550 sum -10.860 7.967 -16.494 21.295 Atomic orbital electron populations 1.21809 0.89706 1.04454 1.03934 1.23297 0.97540 0.79296 1.02151 1.86490 1.23745 1.33664 1.83798 1.24063 0.80744 0.93136 0.71765 1.90700 1.61113 1.44026 1.45011 1.21430 0.90768 0.88877 1.00312 0.89728 1.21611 1.03028 0.98573 0.90682 1.21572 0.96288 0.94639 1.02266 1.21640 0.98348 1.01760 0.93519 1.22302 0.99711 0.86281 0.99206 1.61752 1.21977 1.23355 1.18865 1.22071 0.98305 0.97770 0.88187 1.21295 0.95054 0.99634 0.95952 1.18941 0.95785 0.93951 0.92243 1.21628 0.93919 1.40860 1.01819 0.92239 1.26025 1.01476 0.95365 0.96979 1.70097 1.31644 1.44540 1.11177 0.85450 0.79009 0.78958 0.77327 1.18763 1.20536 1.19398 0.88250 0.91524 0.90351 0.90999 0.92789 0.91693 0.88578 0.88874 0.90444 0.91878 0.88950 0.93653 0.90775 0.93371 0.94764 0.92277 0.93957 1.00065 0.98785 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.29 71.98 0.74 -1.40 16 2 C 0.05 1.18 6.19 71.98 0.45 1.63 16 3 O -0.36 -9.78 10.22 -51.45 -0.53 -10.31 16 4 C 0.46 14.62 5.82 71.23 0.41 15.03 16 5 O -0.52 -20.84 15.12 21.97 0.33 -20.51 16 6 C 0.10 2.54 2.34 44.19 0.10 2.64 16 7 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 8 C -0.10 -1.96 5.36 30.65 0.16 -1.80 16 9 C -0.11 -1.62 6.00 30.68 0.18 -1.44 16 10 C -0.11 -2.13 6.09 30.65 0.19 -1.95 16 11 C 0.05 1.32 5.30 86.32 0.46 1.78 16 12 N -0.53 -17.06 4.21 -875.51 -3.69 -20.75 16 13 C 0.06 2.55 4.60 86.30 0.40 2.95 16 14 C -0.08 -3.78 5.20 30.59 0.16 -3.63 16 15 C 0.03 1.63 4.97 29.85 0.15 1.78 16 16 C -0.54 -32.93 9.11 25.60 0.23 -32.69 16 17 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 18 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 19 N -0.93 -59.14 13.29 21.45 0.28 -58.85 16 20 Si 0.97 45.93 29.54 68.60 2.03 47.96 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.61 8.13 -2.39 -0.02 1.60 16 28 H 0.05 1.44 8.13 -2.38 -0.02 1.42 16 29 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 2.11 6.49 -2.39 -0.02 2.09 16 37 H 0.05 2.11 5.68 -2.39 -0.01 2.10 16 38 H 0.03 1.31 8.06 -2.39 -0.02 1.29 16 39 H 0.06 2.57 6.65 -2.39 -0.02 2.56 16 40 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 41 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 42 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -74.27 343.62 3.48 -70.79 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.95 Total: 8.36 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 4.10 Total: -16.69 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.40 Total: -79.60 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -0.19 Total: -30.82 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -74.27 3.48 -70.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071016567.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.513 kcal (2) G-P(sol) polarization free energy of solvation -74.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds