Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47008 * 2 1 4 4 C 1.34233 * 116.99708 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99880 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99875 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.46498 * 328.88233 * 6 4 3 8 8 C 1.53038 * 109.45449 * 88.84157 * 6 4 3 9 9 C 1.53128 * 109.27406 * 179.19199 * 8 6 4 10 10 C 1.53110 * 109.16163 * 302.34951 * 9 8 6 11 11 C 1.53034 * 109.28022 * 57.65418 * 10 9 8 12 12 N 1.46838 * 109.46187 * 208.89537 * 6 4 3 13 13 C 1.46898 * 111.00096 * 54.15010 * 12 6 4 14 14 C 1.53011 * 109.46902 * 175.97958 * 13 12 6 15 15 C 1.52998 * 109.46817 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47077 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47362 * 89.99456 * 20 18 16 22 22 H 1.48499 * 109.47062 * 209.99655 * 20 18 16 23 23 H 1.48497 * 109.47088 * 329.99680 * 20 18 16 24 24 H 1.09007 * 109.46802 * 60.00307 * 1 2 3 25 25 H 1.09004 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47634 * 300.00537 * 1 2 3 27 27 H 1.08997 * 109.47265 * 239.99818 * 2 1 3 28 28 H 1.09007 * 109.46802 * 119.99693 * 2 1 3 29 29 H 1.08995 * 109.50900 * 299.13712 * 8 6 4 30 30 H 1.09003 * 109.50641 * 59.26002 * 8 6 4 31 31 H 1.09001 * 109.52001 * 62.25367 * 9 8 6 32 32 H 1.08999 * 109.51960 * 182.37720 * 9 8 6 33 33 H 1.09003 * 109.50339 * 177.59510 * 10 9 8 34 34 H 1.09001 * 109.50511 * 297.67295 * 10 9 8 35 35 H 1.08998 * 109.46686 * 180.80409 * 11 10 9 36 36 H 1.08997 * 109.46536 * 60.83818 * 11 10 9 37 37 H 1.08991 * 109.47232 * 55.97976 * 13 12 6 38 38 H 1.08998 * 109.46887 * 295.97651 * 13 12 6 39 39 H 1.08998 * 109.47099 * 299.99563 * 14 13 12 40 40 H 1.09001 * 109.47053 * 59.99821 * 14 13 12 41 41 H 1.09006 * 109.47395 * 300.00083 * 15 14 13 42 42 H 1.09004 * 109.47063 * 59.99740 * 15 14 13 43 43 H 0.96994 * 120.00172 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.2468 3.6090 -0.5318 8 6 4.0879 3.4204 1.4425 9 6 4.6921 4.8275 1.4376 10 6 6.0300 4.7973 0.6936 11 6 5.8064 4.2744 -0.7271 12 7 5.2282 2.9258 -0.6684 13 6 5.1281 2.3369 -2.0105 14 6 6.4845 2.4333 -2.7120 15 6 6.3801 1.8205 -4.1101 16 6 7.7162 1.9148 -4.8009 17 1 8.5556 2.3669 -4.2936 18 6 7.8665 1.4248 -6.0808 19 7 6.8442 0.8747 -6.6987 20 14 9.5224 1.5423 -6.9373 21 1 10.3192 0.3239 -6.6438 22 1 9.3144 1.6565 -8.4032 23 1 10.2500 2.7398 -6.4458 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1152 3.4438 1.9336 30 1 4.7509 2.7417 1.9791 31 1 4.0112 5.5145 0.9350 32 1 4.8521 5.1587 2.4636 33 1 6.4447 5.8044 0.6496 34 1 6.7237 4.1408 1.2187 35 1 6.7594 4.2382 -1.2550 36 1 5.1237 4.9396 -1.2558 37 1 4.3802 2.8781 -2.5898 38 1 4.8357 1.2902 -1.9270 39 1 6.7769 3.4800 -2.7954 40 1 7.2325 1.8921 -2.1326 41 1 6.0874 0.7738 -4.0271 42 1 5.6321 2.3621 -4.6892 43 1 6.9500 0.5296 -7.5990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071016569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = -103.765390 kcal Electronic energy + Delta-G solvation = -21319.660707 eV Core-core repulsion = 18171.145944 eV Total energy + Delta-G solvation = -3148.514763 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.74747 -38.73483 -36.41743 -34.82137 -32.94503 -32.12422 -31.18728 -30.57748 -26.79776 -25.03915 -24.17651 -23.00280 -22.09449 -20.95780 -19.86122 -19.56982 -17.73488 -16.68658 -16.54668 -16.12942 -15.30018 -14.80460 -14.66544 -14.40449 -14.37395 -13.85357 -13.40094 -13.27905 -13.14437 -12.96392 -12.65140 -12.20525 -12.01524 -11.74631 -11.62269 -11.44687 -11.40289 -11.04687 -10.88403 -10.73553 -10.70841 -10.51955 -10.49857 -10.27358 -9.97798 -9.53728 -9.29848 -9.01265 -8.30285 -8.12502 -5.95592 -3.97607 2.27042 2.56087 3.35217 3.40929 3.44401 3.99373 4.50109 4.55977 4.67077 4.79796 4.84313 4.85887 4.99476 5.10087 5.14898 5.17921 5.40186 5.48308 5.55103 5.57010 5.62428 5.64171 5.73826 5.79084 5.80290 5.85273 5.96687 6.02371 6.14633 6.30253 6.31464 6.46575 6.72498 6.77734 7.10340 7.25091 7.33836 7.72452 7.87534 7.89289 8.04767 8.47735 9.09380 9.66063 11.16006 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.004547 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.692148 B = 6156.629739 C = 7544.162671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.463 3.537 5 O -0.480 6.480 6 C 0.098 3.902 7 H 0.069 0.931 8 C -0.106 4.106 9 C -0.117 4.117 10 C -0.120 4.120 11 C 0.052 3.948 12 N -0.519 5.519 13 C 0.046 3.954 14 C -0.106 4.106 15 C 0.022 3.978 16 C -0.517 4.517 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.034 0.966 37 H 0.027 0.973 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.275 5.546 17.357 21.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.281 6.281 4 C 0.304 3.696 5 O -0.364 6.364 6 C -0.012 4.012 7 H 0.087 0.913 8 C -0.144 4.144 9 C -0.155 4.155 10 C -0.158 4.158 11 C -0.075 4.075 12 N -0.246 5.246 13 C -0.080 4.080 14 C -0.143 4.143 15 C -0.015 4.015 16 C -0.556 4.556 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.052 0.948 37 H 0.045 0.955 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.819 4.836 17.466 21.107 hybrid contribution 0.275 0.220 -1.156 1.208 sum -10.544 5.057 16.310 20.069 Atomic orbital electron populations 1.21798 0.92710 1.02905 1.03405 1.23018 0.95235 0.80319 1.02781 1.86489 1.24802 1.32419 1.84365 1.23567 0.80391 0.92682 0.72992 1.90694 1.60108 1.42613 1.43014 1.21208 0.91849 0.89744 0.98415 0.91318 1.21558 1.01817 0.97850 0.93143 1.21563 0.97301 0.95728 1.00859 1.21650 0.97324 1.01016 0.95786 1.22249 1.00902 0.87559 0.96839 1.61876 1.20048 1.21622 1.21055 1.22491 0.99883 0.99785 0.85876 1.21721 0.93758 1.00519 0.98346 1.19067 0.97063 0.95976 0.89431 1.21241 0.96362 1.38595 0.99373 0.92653 1.25026 0.96588 0.95372 0.97510 1.69969 1.30141 1.40192 1.13311 0.86595 0.84307 0.78457 0.78645 1.20659 1.21279 1.19879 0.91422 0.90279 0.91640 0.90986 0.91316 0.90894 0.90277 0.91926 0.91304 0.91318 0.90830 0.88634 0.94789 0.95483 0.90276 0.93146 0.92319 0.96581 0.96859 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.06 0.68 6.19 37.16 0.23 0.91 16 3 O -0.36 -4.92 10.22 -39.27 -0.40 -5.32 16 4 C 0.46 7.17 6.13 36.01 0.22 7.39 16 5 O -0.48 -8.97 14.89 -18.75 -0.28 -9.25 16 6 C 0.10 1.35 2.34 -68.88 -0.16 1.19 16 7 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 8 C -0.11 -1.15 5.36 -26.65 -0.14 -1.29 16 9 C -0.12 -1.09 6.00 -26.61 -0.16 -1.25 16 10 C -0.12 -1.29 6.09 -26.66 -0.16 -1.45 16 11 C 0.05 0.71 5.03 -3.83 -0.02 0.69 16 12 N -0.52 -8.38 4.36 -228.08 -0.99 -9.37 16 13 C 0.05 0.89 4.58 -3.82 -0.02 0.87 16 14 C -0.11 -2.31 4.65 -26.73 -0.12 -2.43 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 19 N -0.90 -27.64 13.29 55.43 0.74 -26.90 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 25 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 28 H 0.07 0.74 8.13 -51.92 -0.42 0.32 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 1.43 5.84 -51.93 -0.30 1.12 16 36 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 1.67 6.10 -51.93 -0.32 1.36 16 39 H 0.05 1.04 6.19 -51.93 -0.32 0.72 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -32.86 342.39 -8.97 -41.83 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -7.67 Total: -3.65 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -0.50 Total: -9.61 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: -0.26 Total: -36.27 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.68 Total: -14.57 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.86 -8.97 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071016569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.931 kcal (2) G-P(sol) polarization free energy of solvation -32.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds