Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47008 * 2 1 4 4 C 1.34233 * 116.99708 * 179.97438 * 3 2 1 5 5 O 1.20830 * 119.99880 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99875 * 179.97438 * 4 3 2 7 7 H 1.08996 * 109.46498 * 328.88233 * 6 4 3 8 8 C 1.53038 * 109.45449 * 88.84157 * 6 4 3 9 9 C 1.53128 * 109.27406 * 179.19199 * 8 6 4 10 10 C 1.53110 * 109.16163 * 302.34951 * 9 8 6 11 11 C 1.53034 * 109.28022 * 57.65418 * 10 9 8 12 12 N 1.46838 * 109.46187 * 208.89537 * 6 4 3 13 13 C 1.46898 * 111.00096 * 54.15010 * 12 6 4 14 14 C 1.53011 * 109.46902 * 175.97958 * 13 12 6 15 15 C 1.52998 * 109.46817 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47077 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00001 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99907 * 180.02562 * 16 15 14 19 19 N 1.31510 * 120.00113 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47362 * 89.99456 * 20 18 16 22 22 H 1.48499 * 109.47062 * 209.99655 * 20 18 16 23 23 H 1.48497 * 109.47088 * 329.99680 * 20 18 16 24 24 H 1.09007 * 109.46802 * 60.00307 * 1 2 3 25 25 H 1.09004 * 109.47185 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47634 * 300.00537 * 1 2 3 27 27 H 1.08997 * 109.47265 * 239.99818 * 2 1 3 28 28 H 1.09007 * 109.46802 * 119.99693 * 2 1 3 29 29 H 1.08995 * 109.50900 * 299.13712 * 8 6 4 30 30 H 1.09003 * 109.50641 * 59.26002 * 8 6 4 31 31 H 1.09001 * 109.52001 * 62.25367 * 9 8 6 32 32 H 1.08999 * 109.51960 * 182.37720 * 9 8 6 33 33 H 1.09003 * 109.50339 * 177.59510 * 10 9 8 34 34 H 1.09001 * 109.50511 * 297.67295 * 10 9 8 35 35 H 1.08998 * 109.46686 * 180.80409 * 11 10 9 36 36 H 1.08997 * 109.46536 * 60.83818 * 11 10 9 37 37 H 1.08991 * 109.47232 * 55.97976 * 13 12 6 38 38 H 1.08998 * 109.46887 * 295.97651 * 13 12 6 39 39 H 1.08998 * 109.47099 * 299.99563 * 14 13 12 40 40 H 1.09001 * 109.47053 * 59.99821 * 14 13 12 41 41 H 1.09006 * 109.47395 * 300.00083 * 15 14 13 42 42 H 1.09004 * 109.47063 * 59.99740 * 15 14 13 43 43 H 0.96994 * 120.00172 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.2468 3.6090 -0.5318 8 6 4.0879 3.4204 1.4425 9 6 4.6921 4.8275 1.4376 10 6 6.0300 4.7973 0.6936 11 6 5.8064 4.2744 -0.7271 12 7 5.2282 2.9258 -0.6684 13 6 5.1281 2.3369 -2.0105 14 6 6.4845 2.4333 -2.7120 15 6 6.3801 1.8205 -4.1101 16 6 7.7162 1.9148 -4.8009 17 1 8.5556 2.3669 -4.2936 18 6 7.8665 1.4248 -6.0808 19 7 6.8442 0.8747 -6.6987 20 14 9.5224 1.5423 -6.9373 21 1 10.3192 0.3239 -6.6438 22 1 9.3144 1.6565 -8.4032 23 1 10.2500 2.7398 -6.4458 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.1152 3.4438 1.9336 30 1 4.7509 2.7417 1.9791 31 1 4.0112 5.5145 0.9350 32 1 4.8521 5.1587 2.4636 33 1 6.4447 5.8044 0.6496 34 1 6.7237 4.1408 1.2187 35 1 6.7594 4.2382 -1.2550 36 1 5.1237 4.9396 -1.2558 37 1 4.3802 2.8781 -2.5898 38 1 4.8357 1.2902 -1.9270 39 1 6.7769 3.4800 -2.7954 40 1 7.2325 1.8921 -2.1326 41 1 6.0874 0.7738 -4.0271 42 1 5.6321 2.3621 -4.6892 43 1 6.9500 0.5296 -7.5990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071016569.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = -123.775100 kcal Electronic energy + Delta-G solvation = -21320.528393 eV Core-core repulsion = 18171.145944 eV Total energy + Delta-G solvation = -3149.382449 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.93245 -39.86966 -37.60978 -36.45287 -34.77886 -33.10412 -32.53115 -31.89354 -28.54620 -26.36428 -25.42694 -24.11744 -23.60350 -22.02087 -21.54307 -20.66091 -18.90868 -18.53621 -17.75410 -17.57494 -16.64126 -16.38578 -16.10219 -15.86312 -15.37611 -14.86355 -14.71396 -14.51925 -14.32736 -14.07394 -13.83993 -13.61791 -13.40736 -13.29022 -12.93171 -12.71446 -12.58130 -12.47684 -12.41535 -12.35122 -11.98955 -11.73837 -11.59617 -11.54975 -11.45329 -11.32602 -11.07157 -11.00783 -10.57511 -9.39087 -8.22106 -6.34015 1.06058 1.38730 1.41101 1.50779 1.52228 2.39460 2.76924 3.10919 3.56464 3.73464 3.90958 3.95769 3.96884 4.05098 4.09192 4.16132 4.25666 4.31160 4.33489 4.53887 4.56947 4.70366 4.79569 4.80678 4.89276 4.91965 4.92907 4.99895 5.07887 5.10549 5.13834 5.19541 5.29284 5.39648 5.45603 5.48256 5.67280 5.80496 5.88230 6.04844 6.21913 6.70642 6.82082 7.35428 8.90340 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017041 B = 0.004547 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.692148 B = 6156.629739 C = 7544.162671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.360 6.360 4 C 0.462 3.538 5 O -0.521 6.521 6 C 0.095 3.905 7 H 0.083 0.917 8 C -0.101 4.101 9 C -0.111 4.111 10 C -0.115 4.115 11 C 0.047 3.953 12 N -0.530 5.530 13 C 0.061 3.939 14 C -0.089 4.089 15 C 0.027 3.973 16 C -0.543 4.543 17 H 0.062 0.938 18 C -0.002 4.002 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.260 1.260 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.027 0.973 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.048 0.952 41 H -0.018 1.018 42 H -0.008 1.008 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.241 7.359 18.637 22.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.277 6.277 4 C 0.304 3.696 5 O -0.409 6.409 6 C -0.015 4.015 7 H 0.101 0.899 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.153 4.153 11 C -0.080 4.080 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.126 4.126 15 C -0.011 4.011 16 C -0.581 4.581 17 H 0.080 0.920 18 C -0.199 4.199 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.184 1.184 24 H 0.084 0.916 25 H 0.118 0.882 26 H 0.096 0.904 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.045 0.955 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.067 0.933 41 H 0.000 1.000 42 H 0.010 0.990 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.806 6.672 18.770 22.662 hybrid contribution 0.187 -0.389 -1.547 1.606 sum -10.618 6.283 17.223 21.186 Atomic orbital electron populations 1.21813 0.89788 1.04464 1.03898 1.23304 0.97496 0.79252 1.02223 1.86494 1.23726 1.33739 1.83752 1.24037 0.80737 0.93040 0.71753 1.90675 1.61094 1.44005 1.45124 1.21437 0.90728 0.88966 1.00348 0.89909 1.21610 1.03051 0.98540 0.90641 1.21576 0.96302 0.94688 1.02262 1.21643 0.98350 1.01756 0.93518 1.22359 0.99978 0.86410 0.99204 1.61795 1.21930 1.23268 1.18726 1.22114 0.97946 0.98778 0.87832 1.21455 0.95213 1.00600 0.95353 1.18956 0.95914 0.93993 0.92200 1.21659 0.97210 1.39042 1.00154 0.91973 1.26036 1.01007 0.94586 0.98303 1.70109 1.32732 1.40858 1.13849 0.85387 0.78887 0.79045 0.77369 1.19893 1.20518 1.18395 0.91587 0.88194 0.90404 0.92658 0.90918 0.88567 0.91534 0.90614 0.88808 0.89054 0.91732 0.90278 0.93973 0.95509 0.92862 0.91607 0.93274 0.99960 0.98967 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 10.29 71.98 0.74 -1.36 16 2 C 0.05 1.15 6.19 71.98 0.45 1.60 16 3 O -0.36 -9.68 10.22 -51.45 -0.53 -10.20 16 4 C 0.46 14.47 6.13 71.24 0.44 14.91 16 5 O -0.52 -20.33 14.89 21.95 0.33 -20.00 16 6 C 0.09 2.53 2.34 44.19 0.10 2.63 16 7 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 8 C -0.10 -1.95 5.36 30.65 0.16 -1.79 16 9 C -0.11 -1.67 6.00 30.67 0.18 -1.49 16 10 C -0.11 -2.18 6.09 30.64 0.19 -2.00 16 11 C 0.05 1.24 5.03 86.32 0.43 1.67 16 12 N -0.53 -17.07 4.36 -875.52 -3.82 -20.89 16 13 C 0.06 2.42 4.58 86.31 0.40 2.82 16 14 C -0.09 -4.00 4.65 30.60 0.14 -3.85 16 15 C 0.03 1.53 4.97 29.85 0.15 1.68 16 16 C -0.54 -32.31 9.11 25.60 0.23 -32.08 16 17 H 0.06 3.53 7.74 -2.91 -0.02 3.50 16 18 C 0.00 -0.11 5.46 84.66 0.46 0.36 16 19 N -0.94 -58.94 13.29 21.45 0.28 -58.65 16 20 Si 0.97 45.48 29.54 68.60 2.03 47.50 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 24 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 28 H 0.07 1.58 8.13 -2.38 -0.02 1.56 16 29 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 2.32 5.84 -2.39 -0.01 2.30 16 36 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 2.39 6.10 -2.39 -0.01 2.38 16 39 H 0.07 2.75 6.19 -2.39 -0.01 2.73 16 40 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 41 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 42 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 43 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -73.26 342.39 3.32 -69.93 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.95 Total: 9.22 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 4.08 Total: -16.90 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -3.53 Total: -79.54 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.20 Total: -30.21 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -73.26 3.32 -69.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071016569.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.841 kcal (2) G-P(sol) polarization free energy of solvation -73.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds