Wall clock time and date at job start Mon Mar 30 2020 00:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46652 * 2 1 4 4 O 1.42893 * 109.47128 * 240.00446 * 2 1 3 5 5 C 1.42898 * 114.00248 * 148.17161 * 4 2 1 6 6 C 1.53002 * 109.46760 * 271.50463 * 5 4 2 7 7 C 1.53004 * 109.47169 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46800 * 59.99917 * 7 6 5 9 9 C 1.53002 * 109.47327 * 299.99986 * 8 7 6 10 10 C 1.52994 * 109.47130 * 60.00137 * 9 8 7 11 11 C 1.50697 * 109.46830 * 119.99789 * 2 1 3 12 12 O 1.21285 * 119.99171 * 115.28256 * 11 2 1 13 13 N 1.34770 * 120.00506 * 295.00102 * 11 2 1 14 14 C 1.46501 * 119.99832 * 0.02562 * 13 11 2 15 15 C 1.46505 * 120.00395 * 180.02562 * 13 11 2 16 16 C 1.50696 * 109.47338 * 89.99631 * 15 13 11 17 17 H 1.08006 * 119.99859 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99954 * 180.02562 * 16 15 13 19 19 N 1.31511 * 120.00111 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46593 * 60.00229 * 20 18 16 22 22 H 1.48496 * 109.46923 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46943 * 300.00511 * 20 18 16 24 24 H 1.09005 * 109.47270 * 186.59769 * 1 2 3 25 25 H 1.09001 * 109.47362 * 306.59405 * 1 2 3 26 26 H 1.09006 * 109.47536 * 66.59605 * 1 2 3 27 27 H 1.08999 * 109.47426 * 31.49740 * 5 4 2 28 28 H 1.09000 * 109.47279 * 299.99612 * 6 5 4 29 29 H 1.09004 * 109.47453 * 59.99476 * 6 5 4 30 30 H 1.09000 * 109.46897 * 300.00083 * 7 6 5 31 31 H 1.09003 * 109.47400 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46907 * 180.02562 * 8 7 6 33 33 H 1.08994 * 109.47583 * 60.00102 * 8 7 6 34 34 H 1.09005 * 109.46956 * 300.00042 * 9 8 7 35 35 H 1.08991 * 109.47180 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.47570 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47279 * 60.00102 * 10 9 8 38 38 H 1.09000 * 109.47267 * 90.00346 * 14 13 11 39 39 H 1.09000 * 109.46895 * 209.99797 * 14 13 11 40 40 H 1.09001 * 109.47109 * 329.99553 * 14 13 11 41 41 H 1.08999 * 109.47033 * 210.00453 * 15 13 11 42 42 H 1.09005 * 109.46402 * 329.99834 * 15 13 11 43 43 H 0.96996 * 120.00136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 3.2457 -0.1664 -1.6654 6 6 2.9718 0.9744 -2.6474 7 6 4.2989 1.5179 -3.1809 8 6 5.0569 0.3988 -3.8977 9 6 5.3309 -0.7421 -2.9157 10 6 4.0039 -1.2855 -2.3823 11 6 2.0322 -0.7104 1.2305 12 8 2.6573 -1.7440 1.1211 13 7 1.7918 -0.1942 2.4520 14 6 1.0416 1.0573 2.5837 15 6 2.2806 -0.8845 3.6482 16 6 3.6619 -0.3862 3.9866 17 1 4.1289 0.3695 3.3723 18 6 4.3296 -0.8951 5.0804 19 7 3.7611 -1.8156 5.8281 20 14 6.0422 -0.2779 5.4995 21 1 5.9921 1.1837 5.7576 22 1 6.5380 -0.9784 6.7113 23 1 6.9579 -0.5486 4.3622 24 1 -0.3634 -1.0209 0.1181 25 1 -0.3634 0.6126 0.8251 26 1 -0.3634 0.4082 -0.9431 27 1 3.8466 0.2052 -0.8353 28 1 2.3710 0.6029 -3.4775 29 1 2.4321 1.7719 -2.1366 30 1 4.8994 1.8895 -2.3505 31 1 4.1038 2.3304 -3.8808 32 1 6.0026 0.7858 -4.2774 33 1 4.4565 0.0271 -4.7280 34 1 5.9314 -0.3704 -2.0854 35 1 5.8712 -1.5391 -3.4263 36 1 4.1989 -2.0979 -1.6824 37 1 3.4033 -1.6571 -3.2126 38 1 -0.0223 0.8360 2.6682 39 1 1.3743 1.5881 3.4756 40 1 1.2149 1.6788 1.7052 41 1 1.6080 -0.6859 4.4826 42 1 2.3176 -1.9574 3.4588 43 1 4.2310 -2.1738 6.5973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072568824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:20 Heat of formation + Delta-G solvation = -103.334971 kcal Electronic energy + Delta-G solvation = -21794.165340 eV Core-core repulsion = 18645.669241 eV Total energy + Delta-G solvation = -3148.496099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.73460 -38.42457 -36.20225 -34.77550 -32.78934 -31.48198 -30.77278 -29.15931 -27.60735 -26.01158 -24.09100 -22.72110 -22.41310 -21.84237 -19.81103 -18.61465 -17.03972 -16.45717 -16.32558 -15.73010 -14.98500 -14.63178 -14.44399 -14.27801 -14.03020 -13.55642 -13.41135 -13.06246 -12.67911 -12.64322 -12.21809 -12.20738 -12.14806 -11.83398 -11.50795 -11.33329 -11.16886 -11.13911 -10.96052 -10.86513 -10.72289 -10.57189 -10.47761 -10.27062 -10.15551 -9.68153 -9.60311 -8.49028 -8.43012 -7.62248 -6.03830 -4.08771 3.30988 3.35698 3.37132 3.43355 3.61093 4.11041 4.44756 4.69067 4.71116 4.89344 5.04919 5.11297 5.16652 5.22570 5.30411 5.34443 5.36463 5.47164 5.50257 5.58655 5.60643 5.68153 5.79388 5.85417 5.91582 5.95315 5.98748 6.08710 6.11803 6.12196 6.18743 6.29713 6.39790 6.43387 7.04184 7.37698 7.46459 7.56443 7.92617 8.24142 8.43191 8.90633 9.12439 9.56189 11.04223 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.005488 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.808317 B = 5100.974604 C = 6055.374473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.077 0.923 4 O -0.353 6.353 5 C 0.091 3.909 6 C -0.140 4.140 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.118 4.118 10 C -0.113 4.113 11 C 0.482 3.518 12 O -0.526 6.526 13 N -0.602 5.602 14 C 0.081 3.919 15 C 0.245 3.755 16 C -0.527 4.527 17 H 0.055 0.945 18 C 0.062 3.938 19 N -0.894 5.894 20 Si 0.897 3.103 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.032 0.968 42 H 0.043 0.957 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.657 8.251 -16.245 18.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 H 0.095 0.905 4 O -0.271 6.271 5 C 0.034 3.966 6 C -0.178 4.178 7 C -0.155 4.155 8 C -0.158 4.158 9 C -0.156 4.156 10 C -0.151 4.151 11 C 0.267 3.733 12 O -0.402 6.402 13 N -0.336 5.336 14 C -0.063 4.063 15 C 0.126 3.874 16 C -0.565 4.565 17 H 0.073 0.927 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.725 3.275 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.202 1.202 24 H 0.085 0.915 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.389 7.412 -16.216 18.149 hybrid contribution 1.078 0.638 0.569 1.376 sum -2.311 8.050 -15.646 17.747 Atomic orbital electron populations 1.21928 0.92022 1.03719 1.02953 1.22057 0.96020 0.95477 0.85521 0.90520 1.87955 1.38113 1.59670 1.41334 1.22119 0.85408 0.93794 0.95324 1.22081 0.97721 0.98195 0.99834 1.21498 0.96167 0.97782 1.00067 1.21568 0.99975 0.95990 0.98254 1.21517 0.97049 0.97976 0.99012 1.21523 0.95323 0.97971 1.00274 1.20981 0.81115 0.86370 0.84848 1.90669 1.39725 1.23788 1.85982 1.48178 1.54051 1.23794 1.07579 1.21758 0.95309 0.86933 1.02326 1.19277 0.94093 0.93792 0.80203 1.21381 1.01121 1.22872 1.11167 0.92666 1.24930 0.98115 0.94920 0.96082 1.69918 1.38137 1.27991 1.17290 0.86573 0.84392 0.78761 0.77789 1.20255 1.21109 1.20211 0.91457 0.90184 0.91374 0.92141 0.91222 0.92057 0.91865 0.91888 0.92081 0.91954 0.91729 0.91545 0.90536 0.91497 0.93427 0.90730 0.92621 0.94995 0.93886 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.24 37.16 0.34 -1.59 16 2 C 0.07 1.16 2.11 -27.89 -0.06 1.10 16 3 H 0.08 1.10 6.48 -51.93 -0.34 0.76 16 4 O -0.35 -6.06 9.17 -55.10 -0.51 -6.57 16 5 C 0.09 1.36 2.40 -26.73 -0.06 1.30 16 6 C -0.14 -1.62 5.50 -26.73 -0.15 -1.77 16 7 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 8 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 9 C -0.12 -1.36 5.92 -26.73 -0.16 -1.51 16 10 C -0.11 -1.59 5.57 -26.73 -0.15 -1.74 16 11 C 0.48 10.50 7.07 -10.99 -0.08 10.42 16 12 O -0.53 -14.01 16.09 -14.31 -0.23 -14.24 16 13 N -0.60 -13.01 2.86 -182.95 -0.52 -13.53 16 14 C 0.08 1.27 8.92 59.85 0.53 1.81 16 15 C 0.25 6.55 5.16 -5.19 -0.03 6.52 16 16 C -0.53 -15.12 9.39 -34.44 -0.32 -15.45 16 17 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.08 0.90 5.27 -51.93 -0.27 0.62 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 1.01 7.82 -51.93 -0.41 0.61 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.63 7.15 -51.93 -0.37 0.26 16 39 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 40 H 0.06 0.71 6.02 -51.93 -0.31 0.40 16 41 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.04 1.30 7.43 -51.93 -0.39 0.91 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 340.70 15.07 5.13 5.13 Total: -1.00 -33.72 340.70 -8.48 -42.20 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.53 Total: -1.99 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -0.54 Total: -1.88 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.21 Total: -39.65 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.74 Total: -20.80 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.72 -8.48 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072568824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.140 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds