Wall clock time and date at job start Mon Mar 30 2020 00:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.46652 * 2 1 4 4 O 1.42893 * 109.47128 * 240.00446 * 2 1 3 5 5 C 1.42898 * 114.00248 * 148.17161 * 4 2 1 6 6 C 1.53002 * 109.46760 * 271.50463 * 5 4 2 7 7 C 1.53004 * 109.47169 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.46800 * 59.99917 * 7 6 5 9 9 C 1.53002 * 109.47327 * 299.99986 * 8 7 6 10 10 C 1.52994 * 109.47130 * 60.00137 * 9 8 7 11 11 C 1.50697 * 109.46830 * 119.99789 * 2 1 3 12 12 O 1.21285 * 119.99171 * 115.28256 * 11 2 1 13 13 N 1.34770 * 120.00506 * 295.00102 * 11 2 1 14 14 C 1.46501 * 119.99832 * 0.02562 * 13 11 2 15 15 C 1.46505 * 120.00395 * 180.02562 * 13 11 2 16 16 C 1.50696 * 109.47338 * 89.99631 * 15 13 11 17 17 H 1.08006 * 119.99859 * 0.02562 * 16 15 13 18 18 C 1.37879 * 119.99954 * 180.02562 * 16 15 13 19 19 N 1.31511 * 120.00111 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99869 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46593 * 60.00229 * 20 18 16 22 22 H 1.48496 * 109.46923 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46943 * 300.00511 * 20 18 16 24 24 H 1.09005 * 109.47270 * 186.59769 * 1 2 3 25 25 H 1.09001 * 109.47362 * 306.59405 * 1 2 3 26 26 H 1.09006 * 109.47536 * 66.59605 * 1 2 3 27 27 H 1.08999 * 109.47426 * 31.49740 * 5 4 2 28 28 H 1.09000 * 109.47279 * 299.99612 * 6 5 4 29 29 H 1.09004 * 109.47453 * 59.99476 * 6 5 4 30 30 H 1.09000 * 109.46897 * 300.00083 * 7 6 5 31 31 H 1.09003 * 109.47400 * 179.97438 * 7 6 5 32 32 H 1.09002 * 109.46907 * 180.02562 * 8 7 6 33 33 H 1.08994 * 109.47583 * 60.00102 * 8 7 6 34 34 H 1.09005 * 109.46956 * 300.00042 * 9 8 7 35 35 H 1.08991 * 109.47180 * 180.02562 * 9 8 7 36 36 H 1.08994 * 109.47570 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.47279 * 60.00102 * 10 9 8 38 38 H 1.09000 * 109.47267 * 90.00346 * 14 13 11 39 39 H 1.09000 * 109.46895 * 209.99797 * 14 13 11 40 40 H 1.09001 * 109.47109 * 329.99553 * 14 13 11 41 41 H 1.08999 * 109.47033 * 210.00453 * 15 13 11 42 42 H 1.09005 * 109.46402 * 329.99834 * 15 13 11 43 43 H 0.96996 * 120.00136 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 3.2457 -0.1664 -1.6654 6 6 2.9718 0.9744 -2.6474 7 6 4.2989 1.5179 -3.1809 8 6 5.0569 0.3988 -3.8977 9 6 5.3309 -0.7421 -2.9157 10 6 4.0039 -1.2855 -2.3823 11 6 2.0322 -0.7104 1.2305 12 8 2.6573 -1.7440 1.1211 13 7 1.7918 -0.1942 2.4520 14 6 1.0416 1.0573 2.5837 15 6 2.2806 -0.8845 3.6482 16 6 3.6619 -0.3862 3.9866 17 1 4.1289 0.3695 3.3723 18 6 4.3296 -0.8951 5.0804 19 7 3.7611 -1.8156 5.8281 20 14 6.0422 -0.2779 5.4995 21 1 5.9921 1.1837 5.7576 22 1 6.5380 -0.9784 6.7113 23 1 6.9579 -0.5486 4.3622 24 1 -0.3634 -1.0209 0.1181 25 1 -0.3634 0.6126 0.8251 26 1 -0.3634 0.4082 -0.9431 27 1 3.8466 0.2052 -0.8353 28 1 2.3710 0.6029 -3.4775 29 1 2.4321 1.7719 -2.1366 30 1 4.8994 1.8895 -2.3505 31 1 4.1038 2.3304 -3.8808 32 1 6.0026 0.7858 -4.2774 33 1 4.4565 0.0271 -4.7280 34 1 5.9314 -0.3704 -2.0854 35 1 5.8712 -1.5391 -3.4263 36 1 4.1989 -2.0979 -1.6824 37 1 3.4033 -1.6571 -3.2126 38 1 -0.0223 0.8360 2.6682 39 1 1.3743 1.5881 3.4756 40 1 1.2149 1.6788 1.7052 41 1 1.6080 -0.6859 4.4826 42 1 2.3176 -1.9574 3.4588 43 1 4.2310 -2.1738 6.5973 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072568824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:20 Heat of formation + Delta-G solvation = -124.245382 kcal Electronic energy + Delta-G solvation = -21795.072083 eV Core-core repulsion = 18645.669241 eV Total energy + Delta-G solvation = -3149.402842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.19893 -39.72207 -37.41989 -36.60118 -34.86073 -32.82200 -31.71167 -30.31875 -29.42848 -27.54161 -25.82195 -24.00687 -23.50755 -23.13967 -20.76638 -20.23637 -18.75988 -18.29226 -17.83303 -17.18339 -16.61428 -16.20021 -15.86320 -15.38707 -15.25936 -14.80225 -14.65332 -14.33737 -14.19927 -13.86289 -13.76106 -13.55648 -13.29516 -13.14752 -13.11679 -12.91476 -12.69239 -12.53186 -12.39281 -12.22379 -12.10194 -12.00638 -11.76367 -11.73571 -11.45400 -11.28419 -10.84331 -10.67384 -10.07830 -9.45139 -8.25228 -6.40654 1.33228 1.37975 1.45283 1.76005 2.16823 2.37410 2.71249 3.04001 3.61840 3.73287 3.78637 3.89778 4.01551 4.08592 4.24633 4.28387 4.31962 4.41405 4.53919 4.55046 4.62438 4.69054 4.74274 4.81651 4.89468 4.94618 4.97814 5.05134 5.11044 5.18421 5.18954 5.21236 5.25311 5.30158 5.37822 5.49245 5.51988 5.80150 6.02663 6.15509 6.66494 6.74973 7.24772 7.44421 8.81844 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017357 B = 0.005488 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.808317 B = 5100.974604 C = 6055.374473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.081 3.919 3 H 0.106 0.894 4 O -0.371 6.371 5 C 0.084 3.916 6 C -0.131 4.131 7 C -0.117 4.117 8 C -0.116 4.116 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.468 3.532 12 O -0.591 6.591 13 N -0.606 5.606 14 C 0.072 3.928 15 C 0.259 3.741 16 C -0.544 4.544 17 H 0.051 0.949 18 C 0.008 3.992 19 N -0.928 5.928 20 Si 0.967 3.033 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.280 1.280 24 H 0.048 0.952 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.027 0.973 42 H -0.008 1.008 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 11.255 -18.014 21.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.020 3.980 3 H 0.123 0.877 4 O -0.289 6.289 5 C 0.027 3.973 6 C -0.168 4.168 7 C -0.154 4.154 8 C -0.154 4.154 9 C -0.153 4.153 10 C -0.152 4.152 11 C 0.257 3.743 12 O -0.472 6.472 13 N -0.339 5.339 14 C -0.069 4.069 15 C 0.137 3.863 16 C -0.583 4.583 17 H 0.070 0.930 18 C -0.191 4.191 19 N -0.567 5.567 20 Si 0.791 3.209 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.205 1.205 24 H 0.067 0.933 25 H 0.121 0.879 26 H 0.118 0.882 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.045 0.955 42 H 0.011 0.989 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.658 10.470 -17.992 21.136 hybrid contribution 1.118 -0.359 1.133 1.631 sum -2.540 10.111 -16.860 19.823 Atomic orbital electron populations 1.21982 0.88947 1.03384 1.05652 1.22159 0.98072 0.95427 0.82334 0.87692 1.87946 1.38818 1.60964 1.41208 1.22310 0.84434 0.95204 0.95353 1.22012 0.98941 0.96817 0.99061 1.21533 0.95127 0.98444 1.00344 1.21564 1.01102 0.94948 0.97740 1.21521 0.95327 0.99276 0.99214 1.21545 0.97036 0.96960 0.99649 1.22217 0.79911 0.85850 0.86366 1.90629 1.42674 1.26845 1.87024 1.48207 1.54168 1.25358 1.06173 1.22130 0.96232 0.84635 1.03947 1.18754 0.93850 0.91544 0.82115 1.21647 1.02184 1.23047 1.11423 0.93029 1.25875 1.02470 0.94926 0.95854 1.70043 1.39972 1.28982 1.17751 0.85480 0.78695 0.79260 0.77470 1.18141 1.20117 1.20539 0.93325 0.87908 0.88194 0.94912 0.90260 0.90851 0.92657 0.89370 0.90380 0.90804 0.93153 0.90452 0.94526 0.90448 0.90276 0.91251 0.88864 0.95509 0.98948 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 9.24 71.98 0.66 -2.63 16 2 C 0.08 2.56 2.11 29.85 0.06 2.62 16 3 H 0.11 2.70 6.48 -2.39 -0.02 2.69 16 4 O -0.37 -12.67 9.17 -129.98 -1.19 -13.86 16 5 C 0.08 2.51 2.40 30.60 0.07 2.58 16 6 C -0.13 -2.66 5.50 30.60 0.17 -2.49 16 7 C -0.12 -1.99 5.92 30.60 0.18 -1.81 16 8 C -0.12 -1.95 5.92 30.60 0.18 -1.77 16 9 C -0.12 -2.62 5.92 30.59 0.18 -2.44 16 10 C -0.11 -3.30 5.57 30.59 0.17 -3.13 16 11 C 0.47 20.99 7.07 87.66 0.62 21.61 16 12 O -0.59 -33.64 16.09 15.95 0.26 -33.38 16 13 N -0.61 -26.60 2.86 -851.13 -2.43 -29.03 16 14 C 0.07 2.12 8.92 127.77 1.14 3.26 16 15 C 0.26 14.46 5.16 85.63 0.44 14.90 16 16 C -0.54 -32.21 9.39 25.60 0.24 -31.97 16 17 H 0.05 3.01 7.81 -2.91 -0.02 2.99 16 18 C 0.01 0.46 5.46 84.66 0.46 0.92 16 19 N -0.93 -57.24 13.29 21.45 0.28 -56.96 16 20 Si 0.97 45.57 29.54 68.60 2.03 47.59 16 21 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.10 1.88 5.27 -2.39 -0.01 1.87 16 26 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.03 1.13 7.82 -2.39 -0.02 1.11 16 28 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.32 7.87 -2.38 -0.02 1.30 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.08 1.85 7.15 -2.39 -0.02 1.83 16 39 H 0.07 2.13 8.07 -2.39 -0.02 2.11 16 40 H 0.09 2.03 6.02 -2.39 -0.01 2.02 16 41 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 42 H -0.01 -0.50 7.43 -2.38 -0.02 -0.51 16 43 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -78.96 340.70 4.49 -74.47 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.96 Total: 11.51 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 4.59 Total: -0.35 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -2.15 Total: -85.99 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.94 Total: -47.24 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -78.96 4.49 -74.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072568824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.773 kcal (2) G-P(sol) polarization free energy of solvation -78.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds