Wall clock time and date at job start Mon Mar 30 2020 00:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47143 * 2 1 4 4 O 1.42897 * 109.47157 * 120.00555 * 2 1 3 5 5 C 1.42902 * 113.99808 * 271.08642 * 4 2 1 6 6 C 1.53000 * 109.47098 * 151.92178 * 5 4 2 7 7 C 1.52996 * 109.47212 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47273 * 299.99819 * 7 6 5 9 9 C 1.53000 * 109.47040 * 60.00306 * 8 7 6 10 10 C 1.52994 * 109.47506 * 271.92515 * 5 4 2 11 11 C 1.50705 * 109.47104 * 240.00393 * 2 1 3 12 12 O 1.21283 * 120.00053 * 254.47637 * 11 2 1 13 13 N 1.34778 * 119.99877 * 74.47373 * 11 2 1 14 14 C 1.46500 * 120.00125 * 4.64970 * 13 11 2 15 15 C 1.46507 * 119.99774 * 184.64454 * 13 11 2 16 16 C 1.50697 * 109.47016 * 90.00033 * 15 13 11 17 17 H 1.08006 * 120.00157 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00309 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00320 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99380 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47110 * 90.00231 * 20 18 16 22 22 H 1.48500 * 109.46737 * 209.99840 * 20 18 16 23 23 H 1.48499 * 109.47295 * 330.00164 * 20 18 16 24 24 H 1.09004 * 109.46807 * 298.85904 * 1 2 3 25 25 H 1.09000 * 109.47028 * 58.85566 * 1 2 3 26 26 H 1.09001 * 109.46936 * 178.85774 * 1 2 3 27 27 H 1.09002 * 109.46912 * 31.92506 * 5 4 2 28 28 H 1.09002 * 109.46971 * 60.00364 * 6 5 4 29 29 H 1.09002 * 109.46979 * 300.00320 * 6 5 4 30 30 H 1.09003 * 109.47251 * 179.97438 * 7 6 5 31 31 H 1.09002 * 109.47161 * 60.00106 * 7 6 5 32 32 H 1.09002 * 109.47671 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47262 * 300.00225 * 8 7 6 34 34 H 1.08994 * 109.47410 * 60.00137 * 9 8 7 35 35 H 1.09004 * 109.47675 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47644 * 60.00069 * 10 5 4 37 37 H 1.09002 * 109.47029 * 299.99920 * 10 5 4 38 38 H 1.08995 * 109.47400 * 91.51685 * 14 13 11 39 39 H 1.09004 * 109.47130 * 211.52160 * 14 13 11 40 40 H 1.09003 * 109.46611 * 331.51465 * 14 13 11 41 41 H 1.08993 * 109.46739 * 210.00235 * 15 13 11 42 42 H 1.09000 * 109.46789 * 329.99937 * 15 13 11 43 43 H 0.97006 * 119.99729 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1767 0.1784 2.3011 6 6 1.9944 -0.6365 3.5831 7 6 2.1762 0.2760 4.7976 8 6 3.5806 0.8824 4.7743 9 6 3.7630 1.6974 3.4924 10 6 3.5814 0.7844 2.2774 11 6 2.0324 -0.7103 -1.2305 12 8 2.4995 -1.8258 -1.1386 13 7 1.9624 -0.1060 -2.4332 14 6 1.4932 1.2783 -2.5312 15 6 2.3557 -0.8336 -3.6425 16 6 1.1564 -1.5463 -4.2123 17 1 0.1970 -1.4651 -3.7229 18 6 1.2835 -2.3012 -5.3590 19 7 0.2368 -2.9228 -5.8566 20 14 2.9427 -2.4410 -6.2059 21 1 3.6829 -3.6047 -5.6554 22 1 2.7394 -2.6289 -7.6649 23 1 3.7246 -1.2007 -5.9707 24 1 -0.3633 0.4960 0.9001 25 1 -0.3633 0.5315 -0.8795 26 1 -0.3633 -1.0275 -0.0205 27 1 1.4358 0.9773 2.2699 28 1 2.7353 -1.4353 3.6143 29 1 0.9936 -1.0682 3.5999 30 1 2.0458 -0.3045 5.7110 31 1 1.4350 1.0746 4.7663 32 1 3.7100 1.5329 5.6393 33 1 4.3218 0.0837 4.8057 34 1 3.0219 2.4960 3.4610 35 1 4.7638 2.1291 3.4754 36 1 3.7113 1.3651 1.3641 37 1 4.3223 -0.0144 2.3086 38 1 2.3449 1.9558 -2.4704 39 1 0.9818 1.4221 -3.4831 40 1 0.8037 1.4870 -1.7132 41 1 2.7445 -0.1306 -4.3791 42 1 3.1270 -1.5623 -3.3933 43 1 0.3264 -3.4542 -6.6632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072568827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:22 Heat of formation + Delta-G solvation = -97.529839 kcal Electronic energy + Delta-G solvation = -21538.232903 eV Core-core repulsion = 18389.988534 eV Total energy + Delta-G solvation = -3148.244369 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.79486 -38.65247 -36.39554 -34.88332 -32.66182 -31.48262 -30.95233 -29.38267 -28.26260 -26.08932 -24.21502 -22.78484 -22.48197 -21.52846 -20.06428 -18.59039 -17.17772 -16.91467 -16.35324 -15.64129 -15.12985 -14.84113 -14.50126 -14.48070 -14.07536 -13.83455 -13.47637 -13.19684 -12.84834 -12.45553 -12.40438 -12.36759 -12.21912 -12.02521 -11.76073 -11.62947 -11.41126 -11.28720 -11.04644 -10.87856 -10.75011 -10.69286 -10.50252 -10.35724 -10.13354 -9.53346 -9.46364 -8.79967 -8.57807 -7.69222 -6.07851 -4.06738 3.27855 3.32137 3.33244 3.37632 3.39606 4.14724 4.40982 4.53762 4.55618 4.77204 4.89661 5.00717 5.05718 5.10837 5.14900 5.24581 5.26102 5.30455 5.36832 5.41538 5.48639 5.57578 5.72504 5.79177 5.80723 5.82310 5.88949 5.94285 6.00747 6.02858 6.11554 6.16395 6.23771 6.36171 6.68505 6.95881 7.24809 7.40610 7.61909 8.23967 8.47919 8.93695 9.00437 9.52483 11.05462 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035514 B = 0.004014 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.236832 B = 6973.861589 C = 7074.159568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.073 3.927 3 H 0.075 0.925 4 O -0.350 6.350 5 C 0.088 3.912 6 C -0.115 4.115 7 C -0.115 4.115 8 C -0.122 4.122 9 C -0.116 4.116 10 C -0.145 4.145 11 C 0.511 3.489 12 O -0.521 6.521 13 N -0.597 5.597 14 C 0.075 3.925 15 C 0.216 3.784 16 C -0.530 4.530 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.798 12.974 18.557 22.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 H 0.093 0.907 4 O -0.268 6.268 5 C 0.030 3.970 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.160 4.160 9 C -0.154 4.154 10 C -0.182 4.182 11 C 0.296 3.704 12 O -0.396 6.396 13 N -0.331 5.331 14 C -0.069 4.069 15 C 0.096 3.904 16 C -0.569 4.569 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.703 3.297 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.081 0.919 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.076 0.924 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.056 0.944 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.038 12.047 18.442 22.395 hybrid contribution 0.609 0.195 -0.682 0.935 sum 4.647 12.242 17.760 22.065 Atomic orbital electron populations 1.22271 0.93865 1.04221 1.02470 1.21961 0.94972 0.95795 0.86113 0.90707 1.88107 1.86254 1.34168 1.18280 1.22155 0.95701 0.92658 0.86514 1.21559 1.02978 0.98499 0.92270 1.21502 0.97132 0.99005 0.97668 1.21579 0.97325 0.99607 0.97486 1.21501 1.01679 0.97877 0.94300 1.22101 0.98260 0.99699 0.98181 1.20066 0.79736 0.86701 0.83911 1.90674 1.44280 1.19091 1.85547 1.47764 1.64926 1.13220 1.07200 1.21829 0.98776 0.82830 1.03437 1.19674 0.97093 0.92326 0.81336 1.21341 0.95910 1.29811 1.09812 0.90710 1.24854 0.96585 0.94771 0.96791 1.69897 1.29486 1.31966 1.22228 0.86844 0.84658 0.79361 0.78801 1.19850 1.21061 1.19057 0.91908 0.90471 0.90836 0.92351 0.90919 0.91183 0.91501 0.91947 0.92017 0.91749 0.92024 0.91787 0.91912 0.90889 0.93617 0.90359 0.91797 0.95118 0.94429 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.18 37.16 0.34 -2.10 16 2 C 0.07 1.18 2.07 -27.88 -0.06 1.13 16 3 H 0.08 0.99 6.61 -51.93 -0.34 0.64 16 4 O -0.35 -5.87 9.22 -54.71 -0.50 -6.38 16 5 C 0.09 1.06 2.40 -26.73 -0.06 1.00 16 6 C -0.12 -1.23 5.57 -26.73 -0.15 -1.38 16 7 C -0.12 -0.93 5.92 -26.74 -0.16 -1.09 16 8 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 9 C -0.12 -0.97 5.93 -26.70 -0.16 -1.13 16 10 C -0.14 -1.60 5.49 -26.71 -0.15 -1.75 16 11 C 0.51 11.08 6.97 -10.98 -0.08 11.00 16 12 O -0.52 -13.86 16.12 -13.93 -0.22 -14.08 16 13 N -0.60 -12.61 2.86 -182.95 -0.52 -13.14 16 14 C 0.08 1.15 9.93 59.85 0.59 1.74 16 15 C 0.22 5.40 4.27 -5.19 -0.02 5.38 16 16 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 17 H 0.07 2.37 8.06 -52.48 -0.42 1.94 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 19 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 20 Si 0.88 21.83 27.47 -169.99 -4.67 17.17 16 21 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 24 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 25 H 0.08 1.05 6.12 -51.93 -0.32 0.73 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.71 7.78 -51.93 -0.40 0.30 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 40 H 0.06 0.80 4.51 -51.93 -0.23 0.57 16 41 H 0.03 0.72 7.13 -51.93 -0.37 0.35 16 42 H 0.04 1.01 6.79 -51.93 -0.35 0.66 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -34.95 337.70 -8.03 -42.98 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -7.48 Total: -2.50 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -0.50 Total: -2.04 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.25 Total: -40.24 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.73 Total: -20.46 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.95 -8.03 -42.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072568827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.545 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds