Wall clock time and date at job start Mon Mar 30 2020 00:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47143 * 2 1 4 4 O 1.42897 * 109.47157 * 120.00555 * 2 1 3 5 5 C 1.42902 * 113.99808 * 271.08642 * 4 2 1 6 6 C 1.53000 * 109.47098 * 151.92178 * 5 4 2 7 7 C 1.52996 * 109.47212 * 180.02562 * 6 5 4 8 8 C 1.52992 * 109.47273 * 299.99819 * 7 6 5 9 9 C 1.53000 * 109.47040 * 60.00306 * 8 7 6 10 10 C 1.52994 * 109.47506 * 271.92515 * 5 4 2 11 11 C 1.50705 * 109.47104 * 240.00393 * 2 1 3 12 12 O 1.21283 * 120.00053 * 254.47637 * 11 2 1 13 13 N 1.34778 * 119.99877 * 74.47373 * 11 2 1 14 14 C 1.46500 * 120.00125 * 4.64970 * 13 11 2 15 15 C 1.46507 * 119.99774 * 184.64454 * 13 11 2 16 16 C 1.50697 * 109.47016 * 90.00033 * 15 13 11 17 17 H 1.08006 * 120.00157 * 0.02562 * 16 15 13 18 18 C 1.37875 * 120.00309 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00320 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99380 * 0.02562 * 18 16 15 21 21 H 1.48499 * 109.47110 * 90.00231 * 20 18 16 22 22 H 1.48500 * 109.46737 * 209.99840 * 20 18 16 23 23 H 1.48499 * 109.47295 * 330.00164 * 20 18 16 24 24 H 1.09004 * 109.46807 * 298.85904 * 1 2 3 25 25 H 1.09000 * 109.47028 * 58.85566 * 1 2 3 26 26 H 1.09001 * 109.46936 * 178.85774 * 1 2 3 27 27 H 1.09002 * 109.46912 * 31.92506 * 5 4 2 28 28 H 1.09002 * 109.46971 * 60.00364 * 6 5 4 29 29 H 1.09002 * 109.46979 * 300.00320 * 6 5 4 30 30 H 1.09003 * 109.47251 * 179.97438 * 7 6 5 31 31 H 1.09002 * 109.47161 * 60.00106 * 7 6 5 32 32 H 1.09002 * 109.47671 * 179.97438 * 8 7 6 33 33 H 1.09002 * 109.47262 * 300.00225 * 8 7 6 34 34 H 1.08994 * 109.47410 * 60.00137 * 9 8 7 35 35 H 1.09004 * 109.47675 * 180.02562 * 9 8 7 36 36 H 1.09002 * 109.47644 * 60.00069 * 10 5 4 37 37 H 1.09002 * 109.47029 * 299.99920 * 10 5 4 38 38 H 1.08995 * 109.47400 * 91.51685 * 14 13 11 39 39 H 1.09004 * 109.47130 * 211.52160 * 14 13 11 40 40 H 1.09003 * 109.46611 * 331.51465 * 14 13 11 41 41 H 1.08993 * 109.46739 * 210.00235 * 15 13 11 42 42 H 1.09000 * 109.46789 * 329.99937 * 15 13 11 43 43 H 0.97006 * 119.99729 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1767 0.1784 2.3011 6 6 1.9944 -0.6365 3.5831 7 6 2.1762 0.2760 4.7976 8 6 3.5806 0.8824 4.7743 9 6 3.7630 1.6974 3.4924 10 6 3.5814 0.7844 2.2774 11 6 2.0324 -0.7103 -1.2305 12 8 2.4995 -1.8258 -1.1386 13 7 1.9624 -0.1060 -2.4332 14 6 1.4932 1.2783 -2.5312 15 6 2.3557 -0.8336 -3.6425 16 6 1.1564 -1.5463 -4.2123 17 1 0.1970 -1.4651 -3.7229 18 6 1.2835 -2.3012 -5.3590 19 7 0.2368 -2.9228 -5.8566 20 14 2.9427 -2.4410 -6.2059 21 1 3.6829 -3.6047 -5.6554 22 1 2.7394 -2.6289 -7.6649 23 1 3.7246 -1.2007 -5.9707 24 1 -0.3633 0.4960 0.9001 25 1 -0.3633 0.5315 -0.8795 26 1 -0.3633 -1.0275 -0.0205 27 1 1.4358 0.9773 2.2699 28 1 2.7353 -1.4353 3.6143 29 1 0.9936 -1.0682 3.5999 30 1 2.0458 -0.3045 5.7110 31 1 1.4350 1.0746 4.7663 32 1 3.7100 1.5329 5.6393 33 1 4.3218 0.0837 4.8057 34 1 3.0219 2.4960 3.4610 35 1 4.7638 2.1291 3.4754 36 1 3.7113 1.3651 1.3641 37 1 4.3223 -0.0144 2.3086 38 1 2.3449 1.9558 -2.4704 39 1 0.9818 1.4221 -3.4831 40 1 0.8037 1.4870 -1.7132 41 1 2.7445 -0.1306 -4.3791 42 1 3.1270 -1.5623 -3.3933 43 1 0.3264 -3.4542 -6.6632 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072568827.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:22 Heat of formation + Delta-G solvation = -120.276693 kcal Electronic energy + Delta-G solvation = -21539.219281 eV Core-core repulsion = 18389.988534 eV Total energy + Delta-G solvation = -3149.230747 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.17273 -39.83785 -37.46383 -36.65793 -34.77930 -32.81812 -31.69428 -30.49932 -29.93727 -27.54491 -25.75585 -24.00735 -23.44132 -22.75052 -20.88498 -20.12106 -19.15938 -18.40642 -17.78174 -16.98583 -16.53679 -16.30204 -15.98213 -15.47453 -15.18396 -14.85988 -14.77485 -14.50891 -14.34493 -13.79130 -13.75196 -13.65517 -13.39493 -13.25574 -13.13694 -12.98991 -12.83853 -12.56282 -12.42208 -12.04346 -12.03638 -11.91074 -11.75708 -11.51548 -11.46585 -11.18522 -10.84949 -10.62137 -10.32660 -9.44115 -8.35669 -6.41020 1.31233 1.36206 1.44179 1.68267 1.96553 2.29827 2.88658 2.98759 3.56086 3.78920 3.79619 3.86289 4.03416 4.08246 4.24998 4.29556 4.30249 4.36700 4.56919 4.59143 4.61725 4.62516 4.66832 4.71668 4.78979 4.90094 4.93421 4.98425 5.08036 5.12760 5.19817 5.24359 5.25619 5.31744 5.40766 5.43490 5.52561 5.56667 6.17947 6.27163 6.60226 6.64504 7.19023 7.36171 8.81141 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.035514 B = 0.004014 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.236832 B = 6973.861589 C = 7074.159568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.085 3.915 3 H 0.115 0.885 4 O -0.385 6.385 5 C 0.080 3.920 6 C -0.117 4.117 7 C -0.109 4.109 8 C -0.123 4.123 9 C -0.111 4.111 10 C -0.144 4.144 11 C 0.496 3.504 12 O -0.587 6.587 13 N -0.603 5.603 14 C 0.066 3.934 15 C 0.223 3.777 16 C -0.539 4.539 17 H 0.031 0.969 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.947 3.053 21 H -0.279 1.279 22 H -0.272 1.272 23 H -0.237 1.237 24 H 0.102 0.898 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.084 0.916 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.015 0.985 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.654 16.176 19.749 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.133 0.867 4 O -0.304 6.304 5 C 0.024 3.976 6 C -0.154 4.154 7 C -0.147 4.147 8 C -0.161 4.161 9 C -0.148 4.148 10 C -0.182 4.182 11 C 0.284 3.716 12 O -0.466 6.466 13 N -0.335 5.335 14 C -0.075 4.075 15 C 0.100 3.900 16 C -0.577 4.577 17 H 0.049 0.951 18 C -0.187 4.187 19 N -0.584 5.584 20 Si 0.770 3.230 21 H -0.205 1.205 22 H -0.197 1.197 23 H -0.160 1.160 24 H 0.121 0.879 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.073 0.927 42 H 0.033 0.967 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.877 15.322 19.651 25.391 hybrid contribution 0.265 -0.820 -0.991 1.313 sum 5.141 14.502 18.660 24.186 Atomic orbital electron populations 1.22272 0.92414 1.02796 1.04838 1.21901 0.95708 0.96430 0.83598 0.86704 1.88094 1.86518 1.36386 1.19435 1.22477 0.96951 0.92970 0.85252 1.21601 1.02084 0.98605 0.93150 1.21488 0.97757 0.98939 0.96467 1.21600 0.96816 0.99611 0.98032 1.21493 1.02715 0.97607 0.92986 1.22098 0.96991 0.99464 0.99672 1.21230 0.78477 0.86275 0.85628 1.90626 1.47209 1.22092 1.86722 1.47883 1.64466 1.15177 1.05989 1.22196 1.00889 0.79955 1.04500 1.19363 0.94664 0.92578 0.83350 1.21563 0.95704 1.30614 1.09835 0.95059 1.25845 1.00988 0.94174 0.97653 1.70043 1.32178 1.33065 1.23096 0.85725 0.79301 0.80199 0.77787 1.20493 1.19715 1.15989 0.87920 0.89662 0.94151 0.89823 0.92963 0.91579 0.90545 0.90398 0.90043 0.92799 0.90352 0.91034 0.92003 0.93262 0.89993 0.90925 0.88760 0.92677 0.96693 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.46 9.18 71.98 0.66 -3.80 16 2 C 0.08 2.62 2.07 29.85 0.06 2.68 16 3 H 0.12 2.60 6.61 -2.39 -0.02 2.58 16 4 O -0.39 -12.81 9.22 -130.35 -1.20 -14.01 16 5 C 0.08 1.80 2.40 30.59 0.07 1.87 16 6 C -0.12 -2.38 5.57 30.59 0.17 -2.21 16 7 C -0.11 -1.47 5.92 30.59 0.18 -1.29 16 8 C -0.12 -1.59 5.92 30.59 0.18 -1.41 16 9 C -0.11 -1.52 5.93 30.61 0.18 -1.34 16 10 C -0.14 -2.96 5.49 30.61 0.17 -2.79 16 11 C 0.50 21.75 6.97 87.66 0.61 22.36 16 12 O -0.59 -32.69 16.12 15.59 0.25 -32.44 16 13 N -0.60 -25.16 2.86 -851.12 -2.43 -27.59 16 14 C 0.07 1.84 9.93 127.77 1.27 3.11 16 15 C 0.22 11.16 4.27 85.63 0.37 11.53 16 16 C -0.54 -32.29 9.94 25.60 0.25 -32.03 16 17 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 18 C 0.01 0.69 5.47 84.66 0.46 1.16 16 19 N -0.94 -60.37 13.96 21.45 0.30 -60.07 16 20 Si 0.95 45.23 27.47 68.60 1.88 47.12 16 21 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 24 H 0.10 1.94 7.82 -2.39 -0.02 1.92 16 25 H 0.08 2.13 6.12 -2.39 -0.01 2.11 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.44 7.51 -2.39 -0.02 1.43 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.25 7.78 -2.39 -0.02 1.23 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 40 H 0.09 2.03 4.51 -2.39 -0.01 2.02 16 41 H 0.06 2.49 7.13 -2.39 -0.02 2.47 16 42 H 0.01 0.82 6.79 -2.39 -0.02 0.80 16 43 H 0.27 15.96 8.31 -92.70 -0.77 15.18 16 Total: -1.00 -81.74 337.70 4.35 -77.39 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: 0.91 Total: 11.77 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 4.64 Total: -2.16 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -2.13 Total: -87.66 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.95 Total: -46.45 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.12 kcal Total: -81.74 4.35 -77.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072568827.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.885 kcal (2) G-P(sol) polarization free energy of solvation -81.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds