Wall clock time and date at job start Mon Mar 30 2020 00:46:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 O 1.42904 * 109.46923 * 119.99418 * 2 1 3 5 5 C 1.42900 * 113.99940 * 270.00252 * 4 2 1 6 6 C 1.53004 * 109.46900 * 269.99737 * 5 4 2 7 7 C 1.53009 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46895 * 59.99897 * 7 6 5 9 9 C 1.53002 * 109.47572 * 300.00207 * 8 7 6 10 10 C 1.52993 * 109.47105 * 59.99766 * 9 8 7 11 11 C 1.50698 * 109.47650 * 239.99330 * 2 1 3 12 12 O 1.21283 * 120.00472 * 245.00486 * 11 2 1 13 13 N 1.34777 * 119.99538 * 64.99823 * 11 2 1 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 2 15 15 H 1.08999 * 109.47228 * 325.27715 * 14 13 11 16 16 C 1.52999 * 109.47341 * 85.27876 * 14 13 11 17 17 C 1.50706 * 109.47303 * 205.27741 * 14 13 11 18 18 H 1.07998 * 119.99769 * 0.02562 * 17 14 13 19 19 C 1.37877 * 120.00286 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00035 * 179.97438 * 19 17 14 21 21 Si 1.86801 * 119.99998 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.46865 * 89.99417 * 21 19 17 23 23 H 1.48498 * 109.47233 * 209.99802 * 21 19 17 24 24 H 1.48508 * 109.47028 * 329.99943 * 21 19 17 25 25 H 1.09004 * 109.46593 * 60.00682 * 1 2 3 26 26 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47477 * 300.00888 * 1 2 3 28 28 H 1.08993 * 109.47206 * 29.99901 * 5 4 2 29 29 H 1.08993 * 109.47324 * 300.00091 * 6 5 4 30 30 H 1.09001 * 109.47307 * 60.00225 * 6 5 4 31 31 H 1.09004 * 109.46777 * 300.00496 * 7 6 5 32 32 H 1.08994 * 109.46990 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.46987 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47149 * 60.00193 * 8 7 6 35 35 H 1.09003 * 109.46872 * 300.00156 * 9 8 7 36 36 H 1.08997 * 109.47021 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47237 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.46937 * 60.00430 * 10 9 8 39 39 H 0.97001 * 120.00485 * 0.02562 * 13 11 2 40 40 H 1.09001 * 109.46823 * 300.00095 * 16 14 13 41 41 H 1.08999 * 109.47091 * 59.99755 * 16 14 13 42 42 H 1.08996 * 109.47098 * 180.02562 * 16 14 13 43 43 H 0.97000 * 120.00229 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6735 1.1669 5 6 2.1999 0.1831 2.2941 6 6 3.6291 0.7292 2.2800 7 6 3.8367 1.6460 3.4873 8 6 3.6063 0.8531 4.7753 9 6 2.1772 0.3069 4.7894 10 6 1.9696 -0.6097 3.5822 11 6 2.0324 -0.7105 -1.2303 12 8 2.6530 -1.7468 -1.1213 13 7 1.7920 -0.1944 -2.4519 14 6 2.2856 -0.8819 -3.6477 15 1 3.2451 -1.3500 -3.4276 16 6 1.2800 -1.9546 -4.0709 17 6 2.4572 0.1145 -4.7652 18 1 2.2226 1.1558 -4.6010 19 6 2.9149 -0.3031 -5.9970 20 7 3.0642 0.5663 -6.9723 21 14 3.3215 -2.1041 -6.2808 22 1 2.1112 -2.8142 -6.7667 23 1 4.4006 -2.2141 -7.2950 24 1 3.7760 -2.7158 -5.0061 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.4938 1.0120 2.2461 29 1 4.3353 -0.0996 2.3280 30 1 3.7934 1.2938 1.3622 31 1 3.1304 2.4749 3.4398 32 1 4.8547 2.0354 3.4771 33 1 3.7538 1.5063 5.6354 34 1 4.3125 0.0241 4.8229 35 1 1.4710 1.1359 4.7418 36 1 2.0130 -0.2576 5.7073 37 1 0.9516 -0.9992 3.5925 38 1 2.6758 -1.4387 3.6298 39 1 1.2958 0.6346 -2.5392 40 1 1.1559 -2.6753 -3.2625 41 1 0.3205 -1.4866 -4.2909 42 1 1.6475 -2.4664 -4.9602 43 1 3.3866 0.2726 -7.8388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072571421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:54 Heat of formation + Delta-G solvation = -107.482848 kcal Electronic energy + Delta-G solvation = -21335.551567 eV Core-core repulsion = 18186.875602 eV Total energy + Delta-G solvation = -3148.675964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.76397 -38.65544 -36.48351 -34.87858 -32.58414 -31.62950 -30.96110 -29.75029 -29.03779 -25.19532 -24.40405 -22.75988 -22.30909 -20.99139 -20.07438 -19.49012 -17.44247 -17.04131 -16.16374 -15.47689 -15.23267 -15.11009 -14.57968 -14.34948 -14.09354 -13.62782 -13.40378 -13.26379 -12.91375 -12.78408 -12.40700 -12.32080 -12.19560 -12.12712 -11.81000 -11.69581 -11.30587 -11.21919 -11.06360 -10.80328 -10.76215 -10.72049 -10.38577 -10.17658 -9.67517 -9.53098 -9.22303 -8.90484 -8.74938 -8.13731 -6.20697 -4.23194 3.22855 3.25411 3.29729 3.36647 3.42248 4.20052 4.32724 4.53892 4.55243 4.76449 4.92523 5.01275 5.06004 5.12159 5.14032 5.17441 5.26392 5.30463 5.34746 5.41343 5.53832 5.64003 5.74075 5.81019 5.85287 5.93012 5.99855 6.03216 6.11338 6.16761 6.24014 6.33029 6.39980 6.57803 6.87461 7.14606 7.26797 7.34394 7.53070 8.16931 8.53185 8.76445 8.96478 9.40444 10.91422 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.003850 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.816804 B = 7270.729687 C = 7446.786336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 H 0.081 0.919 4 O -0.350 6.350 5 C 0.088 3.912 6 C -0.144 4.144 7 C -0.116 4.116 8 C -0.123 4.123 9 C -0.116 4.116 10 C -0.115 4.115 11 C 0.505 3.495 12 O -0.536 6.536 13 N -0.700 5.700 14 C 0.238 3.762 15 H 0.048 0.952 16 C -0.161 4.161 17 C -0.535 4.535 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.893 5.893 21 Si 0.885 3.115 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.261 1.261 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.394 0.606 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.983 2.550 21.053 21.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.008 3.992 3 H 0.099 0.901 4 O -0.268 6.268 5 C 0.030 3.970 6 C -0.182 4.182 7 C -0.154 4.154 8 C -0.160 4.160 9 C -0.153 4.153 10 C -0.153 4.153 11 C 0.288 3.712 12 O -0.412 6.412 13 N -0.351 5.351 14 C 0.134 3.866 15 H 0.066 0.934 16 C -0.219 4.219 17 C -0.573 4.573 18 H 0.098 0.902 19 C -0.125 4.125 20 N -0.530 5.530 21 Si 0.715 3.285 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.186 1.186 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.227 0.773 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.431 1.622 20.927 21.269 hybrid contribution -0.094 -0.171 -0.483 0.521 sum -3.525 1.451 20.445 20.797 Atomic orbital electron populations 1.22221 0.94015 1.03625 1.02722 1.21975 0.94724 0.96313 0.86210 0.90114 1.88086 1.86211 1.33831 1.18678 1.22168 0.95700 0.92663 0.86441 1.22081 0.97797 0.99966 0.98379 1.21496 1.01723 0.97956 0.94236 1.21582 0.97001 0.99894 0.97527 1.21502 0.97034 0.99132 0.97647 1.21566 1.02632 0.98683 0.92407 1.20236 0.80572 0.85911 0.84456 1.90666 1.40396 1.23601 1.86563 1.46130 1.56248 1.27125 1.05553 1.19099 0.93416 0.91561 0.82485 0.93388 1.22447 1.00948 0.99117 0.99408 1.21038 1.46259 0.95492 0.94475 0.90197 1.24826 0.94333 0.97765 0.95600 1.69865 1.45575 1.34380 1.03160 0.86877 0.77760 0.85434 0.78448 1.20276 1.22142 1.18620 0.90777 0.91234 0.91801 0.92287 0.90868 0.91693 0.92023 0.91691 0.92004 0.91754 0.91946 0.91539 0.91333 0.90954 0.77257 0.94513 0.92791 0.93463 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 9.48 37.15 0.35 -1.66 16 2 C 0.07 1.03 2.92 -27.89 -0.08 0.95 16 3 H 0.08 1.03 7.62 -51.93 -0.40 0.64 16 4 O -0.35 -5.49 9.17 -55.09 -0.51 -6.00 16 5 C 0.09 1.03 2.40 -26.73 -0.06 0.97 16 6 C -0.14 -1.64 5.53 -26.72 -0.15 -1.79 16 7 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 8 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 9 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 10 C -0.12 -1.16 5.57 -26.74 -0.15 -1.31 16 11 C 0.50 10.01 7.15 -10.99 -0.08 9.94 16 12 O -0.54 -13.01 16.17 -14.30 -0.23 -13.24 16 13 N -0.70 -14.10 5.03 -54.93 -0.28 -14.37 16 14 C 0.24 5.76 2.15 -69.08 -0.15 5.61 16 15 H 0.05 1.29 6.63 -51.93 -0.34 0.95 16 16 C -0.16 -3.66 8.97 37.16 0.33 -3.33 16 17 C -0.53 -14.51 9.31 -34.44 -0.32 -14.83 16 18 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 19 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 20 N -0.89 -26.49 13.96 55.43 0.77 -25.71 16 21 Si 0.89 21.99 24.37 -169.99 -4.14 17.85 16 22 H -0.28 -6.62 6.87 56.52 0.39 -6.23 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.26 -6.51 6.53 56.52 0.37 -6.14 16 25 H 0.07 0.81 7.93 -51.93 -0.41 0.39 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.62 7.96 -51.93 -0.41 0.21 16 28 H 0.06 0.60 7.62 -51.93 -0.40 0.21 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.39 6.83 8.32 -40.82 -0.34 6.49 16 40 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 337.22 15.07 5.08 5.08 Total: -1.00 -32.41 337.22 -7.73 -40.14 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.56 Total: 2.95 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -0.88 Total: -6.69 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.50 Total: -40.09 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.74 Total: -19.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.41 -7.73 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.342 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds