Wall clock time and date at job start Mon Mar 30 2020 00:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47333 * 2 1 4 4 O 1.42904 * 109.46923 * 119.99418 * 2 1 3 5 5 C 1.42900 * 113.99940 * 270.00252 * 4 2 1 6 6 C 1.53004 * 109.46900 * 269.99737 * 5 4 2 7 7 C 1.53009 * 109.47004 * 180.02562 * 6 5 4 8 8 C 1.52995 * 109.46895 * 59.99897 * 7 6 5 9 9 C 1.53002 * 109.47572 * 300.00207 * 8 7 6 10 10 C 1.52993 * 109.47105 * 59.99766 * 9 8 7 11 11 C 1.50698 * 109.47650 * 239.99330 * 2 1 3 12 12 O 1.21283 * 120.00472 * 245.00486 * 11 2 1 13 13 N 1.34777 * 119.99538 * 64.99823 * 11 2 1 14 14 C 1.46499 * 119.99665 * 179.72653 * 13 11 2 15 15 H 1.08999 * 109.47228 * 325.27715 * 14 13 11 16 16 C 1.52999 * 109.47341 * 85.27876 * 14 13 11 17 17 C 1.50706 * 109.47303 * 205.27741 * 14 13 11 18 18 H 1.07998 * 119.99769 * 0.02562 * 17 14 13 19 19 C 1.37877 * 120.00286 * 179.97438 * 17 14 13 20 20 N 1.31511 * 120.00035 * 179.97438 * 19 17 14 21 21 Si 1.86801 * 119.99998 * 0.02562 * 19 17 14 22 22 H 1.48500 * 109.46865 * 89.99417 * 21 19 17 23 23 H 1.48498 * 109.47233 * 209.99802 * 21 19 17 24 24 H 1.48508 * 109.47028 * 329.99943 * 21 19 17 25 25 H 1.09004 * 109.46593 * 60.00682 * 1 2 3 26 26 H 1.08996 * 109.47333 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47477 * 300.00888 * 1 2 3 28 28 H 1.08993 * 109.47206 * 29.99901 * 5 4 2 29 29 H 1.08993 * 109.47324 * 300.00091 * 6 5 4 30 30 H 1.09001 * 109.47307 * 60.00225 * 6 5 4 31 31 H 1.09004 * 109.46777 * 300.00496 * 7 6 5 32 32 H 1.08994 * 109.46990 * 180.02562 * 7 6 5 33 33 H 1.09007 * 109.46987 * 180.02562 * 8 7 6 34 34 H 1.09003 * 109.47149 * 60.00193 * 8 7 6 35 35 H 1.09003 * 109.46872 * 300.00156 * 9 8 7 36 36 H 1.08997 * 109.47021 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.47237 * 179.97438 * 10 9 8 38 38 H 1.09003 * 109.46937 * 60.00430 * 10 9 8 39 39 H 0.97001 * 120.00485 * 0.02562 * 13 11 2 40 40 H 1.09001 * 109.46823 * 300.00095 * 16 14 13 41 41 H 1.08999 * 109.47091 * 59.99755 * 16 14 13 42 42 H 1.08996 * 109.47098 * 180.02562 * 16 14 13 43 43 H 0.97000 * 120.00229 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0062 -0.6735 1.1669 5 6 2.1999 0.1831 2.2941 6 6 3.6291 0.7292 2.2800 7 6 3.8367 1.6460 3.4873 8 6 3.6063 0.8531 4.7753 9 6 2.1772 0.3069 4.7894 10 6 1.9696 -0.6097 3.5822 11 6 2.0324 -0.7105 -1.2303 12 8 2.6530 -1.7468 -1.1213 13 7 1.7920 -0.1944 -2.4519 14 6 2.2856 -0.8819 -3.6477 15 1 3.2451 -1.3500 -3.4276 16 6 1.2800 -1.9546 -4.0709 17 6 2.4572 0.1145 -4.7652 18 1 2.2226 1.1558 -4.6010 19 6 2.9149 -0.3031 -5.9970 20 7 3.0642 0.5663 -6.9723 21 14 3.3215 -2.1041 -6.2808 22 1 2.1112 -2.8142 -6.7667 23 1 4.4006 -2.2141 -7.2950 24 1 3.7760 -2.7158 -5.0061 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 1.4938 1.0120 2.2461 29 1 4.3353 -0.0996 2.3280 30 1 3.7934 1.2938 1.3622 31 1 3.1304 2.4749 3.4398 32 1 4.8547 2.0354 3.4771 33 1 3.7538 1.5063 5.6354 34 1 4.3125 0.0241 4.8229 35 1 1.4710 1.1359 4.7418 36 1 2.0130 -0.2576 5.7073 37 1 0.9516 -0.9992 3.5925 38 1 2.6758 -1.4387 3.6298 39 1 1.2958 0.6346 -2.5392 40 1 1.1559 -2.6753 -3.2625 41 1 0.3205 -1.4866 -4.2909 42 1 1.6475 -2.4664 -4.9602 43 1 3.3866 0.2726 -7.8388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072571421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:53 Heat of formation + Delta-G solvation = -128.701333 kcal Electronic energy + Delta-G solvation = -21336.471669 eV Core-core repulsion = 18186.875602 eV Total energy + Delta-G solvation = -3149.596067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.08374 -39.85354 -37.55143 -36.70822 -34.49881 -33.03355 -31.70703 -31.21667 -30.07106 -27.23964 -25.66064 -23.56985 -23.30661 -22.52678 -21.25115 -20.77498 -19.17152 -18.18287 -17.91993 -17.06167 -16.63601 -16.33712 -15.77748 -15.41367 -15.23730 -14.98305 -14.73854 -14.62244 -14.32959 -14.14214 -13.77228 -13.65792 -13.38886 -13.15798 -13.12923 -12.97035 -12.81173 -12.72483 -12.16078 -12.05128 -11.91024 -11.62747 -11.53002 -11.47401 -11.30212 -11.19922 -10.88639 -10.68221 -10.32170 -9.92166 -8.39505 -6.45208 1.25947 1.34597 1.44124 1.68203 2.01819 2.25103 2.95335 2.97551 3.71148 3.78634 3.81660 3.95274 4.05334 4.10247 4.25764 4.29504 4.36358 4.43420 4.54113 4.56355 4.58677 4.65704 4.68093 4.71444 4.79813 4.97294 4.97764 5.07371 5.12235 5.19435 5.23414 5.24642 5.29649 5.31340 5.39836 5.40750 5.51817 5.60684 6.09166 6.26709 6.55938 6.84306 7.17973 7.41368 8.75522 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.034739 B = 0.003850 C = 0.003759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.816804 B = 7270.729687 C = 7446.786336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.077 3.923 3 H 0.105 0.895 4 O -0.381 6.381 5 C 0.083 3.917 6 C -0.146 4.146 7 C -0.112 4.112 8 C -0.123 4.123 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.500 3.500 12 O -0.586 6.586 13 N -0.695 5.695 14 C 0.242 3.758 15 H 0.018 0.982 16 C -0.155 4.155 17 C -0.532 4.532 18 H 0.061 0.939 19 C 0.032 3.968 20 N -0.931 5.931 21 Si 0.936 3.064 22 H -0.258 1.258 23 H -0.291 1.291 24 H -0.267 1.267 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.409 0.591 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.041 0.959 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 3.165 22.856 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.016 3.984 3 H 0.123 0.877 4 O -0.300 6.300 5 C 0.026 3.974 6 C -0.184 4.184 7 C -0.150 4.150 8 C -0.160 4.160 9 C -0.147 4.147 10 C -0.152 4.152 11 C 0.286 3.714 12 O -0.466 6.466 13 N -0.346 5.346 14 C 0.137 3.863 15 H 0.036 0.964 16 C -0.213 4.213 17 C -0.571 4.571 18 H 0.079 0.921 19 C -0.168 4.168 20 N -0.570 5.570 21 Si 0.764 3.236 22 H -0.183 1.183 23 H -0.218 1.218 24 H -0.192 1.192 25 H 0.105 0.895 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.245 0.755 40 H 0.061 0.939 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.875 2.265 22.748 23.375 hybrid contribution 0.389 -0.306 -0.991 1.108 sum -4.487 1.959 21.757 22.301 Atomic orbital electron populations 1.22215 0.91299 1.03461 1.04910 1.21956 0.96502 0.96174 0.83748 0.87705 1.88064 1.86568 1.35691 1.19651 1.22442 0.96168 0.93144 0.85681 1.22089 0.97363 0.99603 0.99322 1.21487 1.02381 0.97778 0.93313 1.21598 0.96928 0.99831 0.97654 1.21494 0.97209 0.99182 0.96834 1.21591 1.02286 0.98584 0.92731 1.21202 0.79251 0.85369 0.85543 1.90637 1.42590 1.26033 1.87319 1.45941 1.56218 1.27540 1.04895 1.18768 0.92987 0.91435 0.83122 0.96421 1.22338 1.01012 0.98660 0.99263 1.21231 1.45302 0.95264 0.95255 0.92116 1.25508 0.94449 1.01292 0.95595 1.69960 1.47037 1.36197 1.03810 0.86048 0.78253 0.81311 0.78027 1.18337 1.21824 1.19222 0.89476 0.92578 0.88714 0.89944 0.93204 0.92817 0.90563 0.91422 0.90139 0.92710 0.90489 0.90295 0.90967 0.92823 0.75495 0.93901 0.91181 0.94076 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 9.48 71.98 0.68 -2.73 16 2 C 0.08 2.18 2.92 29.85 0.09 2.26 16 3 H 0.11 2.43 7.62 -2.39 -0.02 2.41 16 4 O -0.38 -11.65 9.17 -129.99 -1.19 -12.84 16 5 C 0.08 1.80 2.40 30.60 0.07 1.87 16 6 C -0.15 -3.21 5.53 30.60 0.17 -3.04 16 7 C -0.11 -1.73 5.92 30.60 0.18 -1.55 16 8 C -0.12 -1.64 5.92 30.59 0.18 -1.46 16 9 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 10 C -0.11 -2.13 5.57 30.59 0.17 -1.96 16 11 C 0.50 19.70 7.15 87.66 0.63 20.33 16 12 O -0.59 -28.98 16.17 15.95 0.26 -28.72 16 13 N -0.70 -27.61 5.03 -446.09 -2.24 -29.85 16 14 C 0.24 11.72 2.15 44.25 0.10 11.81 16 15 H 0.02 0.98 6.63 -2.39 -0.02 0.96 16 16 C -0.15 -6.87 8.97 71.98 0.65 -6.22 16 17 C -0.53 -29.07 9.31 25.60 0.24 -28.83 16 18 H 0.06 3.48 7.98 -2.91 -0.02 3.45 16 19 C 0.03 1.79 5.45 84.66 0.46 2.25 16 20 N -0.93 -55.67 13.96 21.45 0.30 -55.37 16 21 Si 0.94 45.26 24.37 68.60 1.67 46.93 16 22 H -0.26 -11.65 6.87 99.48 0.68 -10.97 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.27 -13.08 6.53 99.48 0.65 -12.43 16 25 H 0.09 1.61 7.93 -2.38 -0.02 1.59 16 26 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.09 1.45 7.96 -2.39 -0.02 1.43 16 28 H 0.08 1.40 7.62 -2.39 -0.02 1.38 16 29 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.27 7.96 -2.39 -0.02 1.25 16 31 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.41 13.69 8.32 -92.71 -0.77 12.92 16 40 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.04 1.86 3.27 -2.39 -0.01 1.85 16 43 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -71.08 337.22 2.71 -68.37 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.12 Total: 19.97 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 3.79 Total: -8.48 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -1.94 Total: -85.22 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.93 Total: -41.56 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.67 Total: 46.93 kcal Total: -71.08 2.71 -68.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.332 kcal (2) G-P(sol) polarization free energy of solvation -71.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds