Wall clock time and date at job start Mon Mar 30 2020 00:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47353 * 2 1 4 4 C 1.50694 * 109.47419 * 239.99248 * 2 1 3 5 5 H 1.08006 * 120.00146 * 275.00397 * 4 2 1 6 6 C 1.37877 * 119.99937 * 95.00310 * 4 2 1 7 7 N 1.31520 * 120.00039 * 184.91412 * 6 4 2 8 8 Si 1.86797 * 120.00239 * 4.91929 * 6 4 2 9 9 H 1.48495 * 109.47223 * 84.82883 * 8 6 4 10 10 H 1.48493 * 109.47174 * 204.83212 * 8 6 4 11 11 H 1.48510 * 109.46869 * 324.83249 * 8 6 4 12 12 N 1.46504 * 109.46804 * 119.99182 * 2 1 3 13 13 C 1.34771 * 120.00366 * 275.00095 * 12 2 1 14 14 O 1.21288 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50698 * 120.00331 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.46657 * 304.99750 * 15 13 12 17 17 C 1.53001 * 109.47279 * 64.99750 * 15 13 12 18 18 O 1.42903 * 109.47376 * 185.00205 * 15 13 12 19 19 C 1.42900 * 114.00360 * 149.99824 * 18 15 13 20 20 C 1.53002 * 109.46972 * 269.99993 * 19 18 15 21 21 C 1.52996 * 109.47115 * 179.97438 * 20 19 18 22 22 C 1.53001 * 109.47343 * 59.99625 * 21 20 19 23 23 C 1.53002 * 109.47321 * 300.00248 * 22 21 20 24 24 C 1.53001 * 109.47069 * 149.99725 * 19 18 15 25 25 H 1.08998 * 109.47262 * 295.04438 * 1 2 3 26 26 H 1.09001 * 109.46847 * 55.04381 * 1 2 3 27 27 H 1.09000 * 109.47150 * 175.04093 * 1 2 3 28 28 H 0.97000 * 120.00091 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99793 * 95.00472 * 12 2 1 30 30 H 1.09005 * 109.46721 * 180.02562 * 17 15 13 31 31 H 1.09000 * 109.47120 * 300.00224 * 17 15 13 32 32 H 1.08997 * 109.46834 * 60.00215 * 17 15 13 33 33 H 1.09000 * 109.46738 * 29.99655 * 19 18 15 34 34 H 1.09007 * 109.46815 * 299.99726 * 20 19 18 35 35 H 1.09000 * 109.47074 * 59.99315 * 20 19 18 36 36 H 1.08994 * 109.47033 * 299.99974 * 21 20 19 37 37 H 1.09004 * 109.47205 * 179.97438 * 21 20 19 38 38 H 1.09001 * 109.47358 * 179.97438 * 22 21 20 39 39 H 1.09007 * 109.47062 * 59.99957 * 22 21 20 40 40 H 1.09000 * 109.47113 * 300.00154 * 23 22 21 41 41 H 1.08992 * 109.47485 * 179.97438 * 23 22 21 42 42 H 1.08993 * 109.46821 * 299.99643 * 24 19 18 43 43 H 1.08994 * 109.47017 * 60.00146 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.1355 -1.7857 -1.2288 6 6 2.3604 0.0119 -2.3579 7 7 2.7062 -0.6135 -3.4621 8 14 2.3138 1.8788 -2.3176 9 1 3.5993 2.3946 -1.7823 10 1 2.1061 2.3986 -3.6929 11 1 1.1988 2.3274 -1.4452 12 7 2.0183 -0.6905 1.1963 13 6 2.1470 -0.0181 2.3572 14 8 1.8590 1.1589 2.4115 15 6 2.6498 -0.7282 3.5876 16 1 2.0289 -1.6029 3.7814 17 6 4.0979 -1.1695 3.3659 18 8 2.5878 0.1574 4.7075 19 6 2.3741 -0.5007 5.9578 20 6 0.8717 -0.6103 6.2261 21 6 0.6428 -1.3154 7.5645 22 6 1.3036 -0.5099 8.6849 23 6 2.8059 -0.4003 8.4166 24 6 3.0348 0.3054 7.0779 25 1 -0.3634 0.4350 0.9310 26 1 -0.3633 0.5888 -0.8423 27 1 -0.3633 -1.0238 -0.0888 28 1 2.9366 -0.1053 -4.2555 29 1 2.2490 -1.6316 1.1529 30 1 4.4613 -1.6835 4.2557 31 1 4.1451 -1.8450 2.5117 32 1 4.7186 -0.2947 3.1721 33 1 2.8106 -1.4988 5.9223 34 1 0.4352 0.3879 6.2616 35 1 0.4011 -1.1845 5.4281 36 1 1.0793 -2.3135 7.5286 37 1 -0.4275 -1.3931 7.7558 38 1 1.1401 -1.0120 9.6385 39 1 0.8672 0.4883 8.7208 40 1 3.2424 -1.3984 8.3807 41 1 3.2766 0.1739 9.2146 42 1 4.1049 0.3834 6.8867 43 1 2.5982 1.3035 7.1133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072571422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:55 Heat of formation + Delta-G solvation = -136.342562 kcal Electronic energy + Delta-G solvation = -21355.443017 eV Core-core repulsion = 18205.515602 eV Total energy + Delta-G solvation = -3149.927415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.05519 -39.83246 -37.52265 -36.60356 -34.46732 -33.03122 -31.70101 -31.08657 -30.04336 -27.35701 -25.61786 -23.53357 -23.23284 -22.34787 -21.27821 -20.77915 -19.32625 -18.12183 -17.95486 -17.03180 -16.49930 -16.22770 -15.71569 -15.41287 -15.24595 -14.88158 -14.68264 -14.54012 -14.29906 -14.26575 -13.70452 -13.42244 -13.22271 -13.13477 -13.06861 -12.98176 -12.82018 -12.72185 -12.46630 -12.04825 -11.90584 -11.88403 -11.53297 -11.47095 -11.25974 -11.19363 -10.87030 -10.66276 -10.32016 -9.84684 -8.40731 -6.46414 1.27085 1.32221 1.42932 1.70589 2.04720 2.25483 2.89377 3.08254 3.73920 3.79095 3.83460 3.96590 4.05637 4.10107 4.26175 4.29977 4.36516 4.43921 4.56587 4.59124 4.65649 4.69456 4.70664 4.78590 4.80932 4.97516 5.06005 5.08958 5.12431 5.19372 5.23799 5.24966 5.31352 5.34390 5.40197 5.43013 5.52173 5.70995 6.08274 6.27703 6.58295 6.88232 7.19742 7.43577 8.74008 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.037335 B = 0.003893 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.778277 B = 7191.385003 C = 7273.166492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.234 3.766 3 H 0.026 0.974 4 C -0.524 4.524 5 H 0.062 0.938 6 C 0.037 3.963 7 N -0.927 5.927 8 Si 0.922 3.078 9 H -0.276 1.276 10 H -0.275 1.275 11 H -0.260 1.260 12 N -0.698 5.698 13 C 0.497 3.503 14 O -0.589 6.589 15 C 0.078 3.922 16 H 0.111 0.889 17 C -0.164 4.164 18 O -0.382 6.382 19 C 0.082 3.918 20 C -0.144 4.144 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.110 4.110 24 C -0.115 4.115 25 H 0.033 0.967 26 H 0.047 0.953 27 H 0.061 0.939 28 H 0.271 0.729 29 H 0.407 0.593 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.213 -4.754 23.833 24.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.130 3.870 3 H 0.044 0.956 4 C -0.563 4.563 5 H 0.080 0.920 6 C -0.164 4.164 7 N -0.565 5.565 8 Si 0.748 3.252 9 H -0.202 1.202 10 H -0.200 1.200 11 H -0.184 1.184 12 N -0.349 5.349 13 C 0.284 3.716 14 O -0.469 6.469 15 C 0.017 3.983 16 H 0.128 0.872 17 C -0.221 4.221 18 O -0.301 6.301 19 C 0.025 3.975 20 C -0.182 4.182 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.147 4.147 24 C -0.153 4.153 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.243 0.757 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.347 -3.700 23.645 23.935 hybrid contribution 0.041 0.493 -0.814 0.952 sum -0.306 -3.207 22.831 23.057 Atomic orbital electron populations 1.22111 0.97098 1.01444 0.99318 1.18895 0.92008 0.93053 0.83062 0.95607 1.21165 1.44294 0.94960 0.95839 0.91991 1.25544 0.93793 1.02030 0.95067 1.69963 1.46551 1.37620 1.02403 0.86123 0.79558 0.81882 0.77669 1.20163 1.20004 1.18446 1.46312 1.65236 1.14456 1.08890 1.21224 0.77502 0.87315 0.85609 1.90630 1.52270 1.18227 1.85780 1.21954 0.98956 0.92561 0.84793 0.87174 1.22226 0.93396 1.02035 1.04472 1.88072 1.93038 1.34201 1.14745 1.22452 0.95272 0.96883 0.82930 1.22074 0.96337 1.00975 0.98804 1.21487 1.01268 0.99307 0.92862 1.21598 0.95347 1.00353 0.98726 1.21504 0.96636 1.01306 0.95281 1.21609 1.00638 0.99164 0.93906 0.94770 0.93357 0.91963 0.91956 0.75690 0.88603 0.89733 0.93169 0.90015 0.93149 0.92460 0.90570 0.91225 0.90148 0.92700 0.90525 0.90430 0.91271 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.18 9.47 71.98 0.68 -5.49 16 2 C 0.23 11.22 2.22 44.24 0.10 11.32 16 3 H 0.03 1.38 4.73 -2.39 -0.01 1.37 16 4 C -0.52 -28.23 9.05 25.60 0.23 -28.00 16 5 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 6 C 0.04 2.05 5.47 84.65 0.46 2.52 16 7 N -0.93 -54.94 13.96 21.45 0.30 -54.64 16 8 Si 0.92 45.25 26.99 68.60 1.85 47.10 16 9 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.26 -12.64 6.82 99.48 0.68 -11.96 16 12 N -0.70 -27.87 5.03 -446.10 -2.24 -30.11 16 13 C 0.50 19.80 7.14 87.66 0.63 20.42 16 14 O -0.59 -29.32 16.17 15.93 0.26 -29.06 16 15 C 0.08 2.24 2.92 29.85 0.09 2.33 16 16 H 0.11 2.45 7.62 -2.39 -0.02 2.43 16 17 C -0.16 -3.85 9.48 71.98 0.68 -3.17 16 18 O -0.38 -11.81 9.17 -129.99 -1.19 -13.00 16 19 C 0.08 1.76 2.40 30.60 0.07 1.84 16 20 C -0.14 -3.00 5.53 30.59 0.17 -2.83 16 21 C -0.11 -1.60 5.92 30.59 0.18 -1.42 16 22 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 23 C -0.11 -1.41 5.93 30.61 0.18 -1.23 16 24 C -0.12 -2.20 5.58 30.61 0.17 -2.02 16 25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 29 H 0.41 13.73 8.38 -92.71 -0.78 12.95 16 30 H 0.10 1.64 7.97 -2.38 -0.02 1.62 16 31 H 0.08 1.84 7.93 -2.39 -0.02 1.82 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.38 7.62 -2.39 -0.02 1.37 16 34 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.06 1.24 7.96 -2.39 -0.02 1.22 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.93 8.14 -2.38 -0.02 0.92 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -70.25 343.79 2.96 -67.28 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 0.16 Total: 19.59 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 3.83 Total: -7.15 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -1.94 Total: -84.76 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.93 Total: -42.06 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.85 Total: 47.10 kcal Total: -70.25 2.96 -67.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.060 kcal (2) G-P(sol) polarization free energy of solvation -70.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds