Wall clock time and date at job start Mon Mar 30 2020 00:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47635 * 2 1 4 4 C 1.50703 * 109.46835 * 120.00137 * 2 1 3 5 5 H 1.08003 * 120.00299 * 119.99593 * 4 2 1 6 6 C 1.37883 * 119.99735 * 299.99924 * 4 2 1 7 7 N 1.31509 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99552 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47359 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46964 * 119.99956 * 8 6 4 11 11 H 1.48499 * 109.46686 * 239.99533 * 8 6 4 12 12 N 1.46494 * 109.46983 * 239.99499 * 2 1 3 13 13 C 1.34784 * 120.00077 * 85.00770 * 12 2 1 14 14 O 1.21284 * 119.99400 * 359.97438 * 13 12 2 15 15 C 1.50689 * 120.00271 * 180.02562 * 13 12 2 16 16 H 1.08999 * 109.47510 * 59.99617 * 15 13 12 17 17 C 1.53001 * 109.47269 * 299.99323 * 15 13 12 18 18 O 1.42901 * 109.47249 * 179.97438 * 15 13 12 19 19 C 1.42903 * 114.00157 * 209.99594 * 18 15 13 20 20 C 1.52996 * 109.47126 * 209.99807 * 19 18 15 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 H 1.09001 * 109.46800 * 300.00420 * 1 2 3 26 26 H 1.09004 * 109.46548 * 59.99767 * 1 2 3 27 27 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99479 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00767 * 265.00588 * 12 2 1 30 30 H 1.08999 * 109.47094 * 300.00548 * 17 15 13 31 31 H 1.09004 * 109.46592 * 60.00496 * 17 15 13 32 32 H 1.09001 * 109.47268 * 179.97438 * 17 15 13 33 33 H 1.08992 * 109.47309 * 330.00452 * 19 18 15 34 34 H 1.09004 * 109.47368 * 60.00346 * 20 19 18 35 35 H 1.09001 * 109.47372 * 300.00501 * 20 19 18 36 36 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 38 38 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 39 39 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 41 41 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6039 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8584 1.1583 -2.4117 15 6 2.6489 -0.7289 -3.5876 16 1 1.9760 -1.5507 -3.8325 17 6 4.0513 -1.2800 -3.3222 18 8 2.6966 0.1891 -4.6817 19 6 2.4889 -0.4173 -5.9589 20 6 3.2511 0.3694 -7.0270 21 6 3.0282 -0.2795 -8.3945 22 6 1.5344 -0.2724 -8.7249 23 6 0.7721 -1.0591 -7.6567 24 6 0.9950 -0.4102 -6.2892 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7095 1.1618 3.4844 29 1 2.2490 -1.6319 -1.1526 30 1 4.7242 -0.4582 -3.0773 31 1 4.0145 -1.9805 -2.4878 32 1 4.4140 -1.7944 -4.2121 33 1 2.8515 -1.4449 -5.9365 34 1 4.3154 0.3648 -6.7914 35 1 2.8885 1.3971 -7.0494 36 1 3.5716 0.2808 -9.1555 37 1 3.3906 -1.3072 -8.3725 38 1 1.1719 0.7553 -8.7470 39 1 1.3754 -0.7351 -9.6990 40 1 1.1344 -2.0869 -7.6346 41 1 -0.2923 -1.0537 -7.8919 42 1 0.4523 -0.9709 -5.5282 43 1 0.6326 0.6176 -6.3113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072571423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:58 Heat of formation + Delta-G solvation = -115.555953 kcal Electronic energy + Delta-G solvation = -21266.021421 eV Core-core repulsion = 18116.995381 eV Total energy + Delta-G solvation = -3149.026040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.66036 -38.51584 -36.38577 -34.66951 -32.58168 -31.42362 -30.93083 -29.40192 -28.43801 -25.25726 -24.28141 -22.72254 -22.24976 -20.87851 -20.03893 -19.29486 -17.35720 -16.95885 -15.81330 -15.39958 -15.21558 -14.81889 -14.50983 -14.30343 -13.98495 -13.61763 -13.35511 -13.13638 -12.76609 -12.44765 -12.37276 -12.14043 -12.06884 -11.77944 -11.55736 -11.26514 -11.09917 -11.02995 -10.92661 -10.73138 -10.72503 -10.66090 -10.34615 -10.28183 -10.22866 -9.46810 -9.02613 -8.77802 -8.53334 -7.87912 -6.11333 -4.20595 3.24101 3.30278 3.33282 3.37571 3.48293 4.25706 4.42247 4.57614 4.58355 4.79610 4.98904 5.04854 5.11414 5.16671 5.20752 5.24618 5.32961 5.35964 5.41578 5.45187 5.58963 5.69559 5.82474 5.83166 5.90429 5.96214 6.03228 6.05879 6.17832 6.24037 6.27461 6.84128 6.98589 7.16987 7.29697 7.48515 7.60448 7.71866 7.93921 8.16453 8.68617 8.80655 9.16608 9.47129 10.94744 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042404 B = 0.003578 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.154817 B = 7824.307505 C = 8073.750359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.533 4.533 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.708 5.708 13 C 0.502 3.498 14 O -0.535 6.535 15 C 0.069 3.931 16 H 0.078 0.922 17 C -0.168 4.168 18 O -0.349 6.349 19 C 0.088 3.912 20 C -0.116 4.116 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.116 4.116 24 C -0.144 4.144 25 H 0.090 0.910 26 H 0.014 0.986 27 H 0.026 0.974 28 H 0.264 0.736 29 H 0.387 0.613 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 -6.802 -19.228 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.285 3.715 14 O -0.411 6.411 15 C 0.007 3.993 16 H 0.096 0.904 17 C -0.226 4.226 18 O -0.267 6.267 19 C 0.030 3.970 20 C -0.153 4.153 21 C -0.153 4.153 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.182 4.182 25 H 0.109 0.891 26 H 0.033 0.967 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.220 0.780 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.761 -5.606 -19.076 20.073 hybrid contribution 0.294 -1.219 0.913 1.551 sum 3.055 -6.825 -18.163 19.642 Atomic orbital electron populations 1.22083 0.98508 0.99075 1.00931 1.18746 0.90992 0.94038 0.79856 0.93346 1.21255 1.32374 1.13193 0.90290 0.92009 1.24898 0.94834 0.94965 0.99072 1.69917 1.35936 1.22438 1.23763 0.86390 0.78592 0.79509 0.82578 1.19737 1.20871 1.20895 1.46478 1.65593 1.13467 1.10243 1.20178 0.79110 0.87758 0.84405 1.90670 1.49917 1.15818 1.84735 1.22017 0.97378 0.92082 0.87812 0.90406 1.22230 0.96318 1.01839 1.02213 1.88094 1.92340 1.33427 1.12876 1.22152 0.94576 0.96362 0.83886 1.21570 1.00385 1.00309 0.93057 1.21502 0.96447 1.00940 0.96414 1.21579 0.95281 1.00849 0.98279 1.21498 1.00241 0.99193 0.94464 1.22076 0.96813 1.02361 0.96915 0.89124 0.96652 0.95488 0.92626 0.78043 0.91142 0.90836 0.92028 0.92394 0.91310 0.90927 0.91545 0.91984 0.91737 0.92041 0.92076 0.91756 0.91818 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.26 37.16 0.34 -3.39 16 2 C 0.27 6.88 2.56 -69.08 -0.18 6.70 16 3 H 0.05 1.46 7.58 -51.93 -0.39 1.06 16 4 C -0.53 -14.20 8.73 -34.44 -0.30 -14.50 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.11 11.32 55.43 0.63 -24.48 16 8 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.71 -15.02 4.96 -54.94 -0.27 -15.29 16 13 C 0.50 10.58 7.20 -10.99 -0.08 10.51 16 14 O -0.53 -13.83 16.16 -14.36 -0.23 -14.06 16 15 C 0.07 1.08 2.93 -27.89 -0.08 1.00 16 16 H 0.08 1.04 7.62 -51.93 -0.40 0.64 16 17 C -0.17 -2.19 9.42 37.16 0.35 -1.84 16 18 O -0.35 -5.77 9.17 -55.14 -0.51 -6.27 16 19 C 0.09 1.08 2.40 -26.73 -0.06 1.01 16 20 C -0.12 -1.22 5.57 -26.73 -0.15 -1.37 16 21 C -0.12 -0.94 5.92 -26.73 -0.16 -1.09 16 22 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 23 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 24 C -0.14 -1.68 5.53 -26.73 -0.15 -1.82 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 6.98 7.96 -40.82 -0.32 6.65 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.88 7.56 -51.93 -0.39 0.48 16 32 H 0.06 0.65 7.97 -51.93 -0.41 0.23 16 33 H 0.06 0.62 7.62 -51.93 -0.40 0.22 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.78 7.96 -51.93 -0.41 0.36 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -31.71 343.23 -8.76 -40.47 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -7.66 Total: 4.26 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.87 Total: -5.46 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.35 Total: -39.77 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.74 Total: -20.33 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.71 -8.76 -40.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.086 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds