Wall clock time and date at job start Mon Mar 30 2020 00:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47635 * 2 1 4 4 C 1.50703 * 109.46835 * 120.00137 * 2 1 3 5 5 H 1.08003 * 120.00299 * 119.99593 * 4 2 1 6 6 C 1.37883 * 119.99735 * 299.99924 * 4 2 1 7 7 N 1.31509 * 119.99957 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99552 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47359 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46964 * 119.99956 * 8 6 4 11 11 H 1.48499 * 109.46686 * 239.99533 * 8 6 4 12 12 N 1.46494 * 109.46983 * 239.99499 * 2 1 3 13 13 C 1.34784 * 120.00077 * 85.00770 * 12 2 1 14 14 O 1.21284 * 119.99400 * 359.97438 * 13 12 2 15 15 C 1.50689 * 120.00271 * 180.02562 * 13 12 2 16 16 H 1.08999 * 109.47510 * 59.99617 * 15 13 12 17 17 C 1.53001 * 109.47269 * 299.99323 * 15 13 12 18 18 O 1.42901 * 109.47249 * 179.97438 * 15 13 12 19 19 C 1.42903 * 114.00157 * 209.99594 * 18 15 13 20 20 C 1.52996 * 109.47126 * 209.99807 * 19 18 15 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 H 1.09001 * 109.46800 * 300.00420 * 1 2 3 26 26 H 1.09004 * 109.46548 * 59.99767 * 1 2 3 27 27 H 1.08997 * 109.47635 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99479 * 180.02562 * 7 6 4 29 29 H 0.97003 * 120.00767 * 265.00588 * 12 2 1 30 30 H 1.08999 * 109.47094 * 300.00548 * 17 15 13 31 31 H 1.09004 * 109.46592 * 60.00496 * 17 15 13 32 32 H 1.09001 * 109.47268 * 179.97438 * 17 15 13 33 33 H 1.08992 * 109.47309 * 330.00452 * 19 18 15 34 34 H 1.09004 * 109.47368 * 60.00346 * 20 19 18 35 35 H 1.09001 * 109.47372 * 300.00501 * 20 19 18 36 36 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 37 37 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 38 38 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 39 39 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 41 41 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 43 43 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1315 6 6 1.6991 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.1472 -2.2864 3.6039 10 1 3.1471 -0.1859 4.8161 11 1 1.1676 -1.5865 4.8165 12 7 2.0183 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8584 1.1583 -2.4117 15 6 2.6489 -0.7289 -3.5876 16 1 1.9760 -1.5507 -3.8325 17 6 4.0513 -1.2800 -3.3222 18 8 2.6966 0.1891 -4.6817 19 6 2.4889 -0.4173 -5.9589 20 6 3.2511 0.3694 -7.0270 21 6 3.0282 -0.2795 -8.3945 22 6 1.5344 -0.2724 -8.7249 23 6 0.7721 -1.0591 -7.6567 24 6 0.9950 -0.4102 -6.2892 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 0.7095 1.1618 3.4844 29 1 2.2490 -1.6319 -1.1526 30 1 4.7242 -0.4582 -3.0773 31 1 4.0145 -1.9805 -2.4878 32 1 4.4140 -1.7944 -4.2121 33 1 2.8515 -1.4449 -5.9365 34 1 4.3154 0.3648 -6.7914 35 1 2.8885 1.3971 -7.0494 36 1 3.5716 0.2808 -9.1555 37 1 3.3906 -1.3072 -8.3725 38 1 1.1719 0.7553 -8.7470 39 1 1.3754 -0.7351 -9.6990 40 1 1.1344 -2.0869 -7.6346 41 1 -0.2923 -1.0537 -7.8919 42 1 0.4523 -0.9709 -5.5282 43 1 0.6326 0.6176 -6.3113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072571423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:57 Heat of formation + Delta-G solvation = -135.087903 kcal Electronic energy + Delta-G solvation = -21266.868390 eV Core-core repulsion = 18116.995381 eV Total energy + Delta-G solvation = -3149.873009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.02205 -39.80695 -37.50407 -36.61122 -34.45671 -32.78796 -31.70262 -30.66006 -29.94268 -27.36301 -25.60733 -23.55044 -23.28761 -22.51191 -21.18216 -20.74879 -19.05671 -18.11188 -17.57067 -17.06835 -16.51316 -16.27243 -15.64567 -15.38864 -15.24085 -14.84236 -14.69447 -14.40749 -14.26113 -13.77743 -13.65886 -13.33903 -13.14094 -13.02074 -12.98356 -12.88170 -12.75503 -12.68504 -12.29365 -12.11693 -12.04712 -11.89025 -11.52862 -11.47041 -11.19742 -11.10802 -10.69389 -10.58765 -10.29880 -9.78295 -8.17990 -6.35999 1.45000 1.45646 1.58123 1.74665 2.09717 2.42861 3.02114 3.12810 3.74518 3.79051 3.84085 3.97629 4.06022 4.11137 4.25947 4.29931 4.36618 4.56600 4.59110 4.65381 4.70550 4.71646 4.80930 4.89253 4.97659 5.07230 5.08008 5.12259 5.19940 5.23832 5.25047 5.31281 5.40243 5.41226 5.52242 5.59526 5.65925 5.87921 6.07917 6.27529 6.71910 6.94918 7.31552 7.53445 8.88873 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042404 B = 0.003578 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.154817 B = 7824.307505 C = 8073.750359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.270 3.730 3 H -0.006 1.006 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.976 3.024 9 H -0.257 1.257 10 H -0.285 1.285 11 H -0.279 1.279 12 N -0.699 5.699 13 C 0.494 3.506 14 O -0.593 6.593 15 C 0.079 3.921 16 H 0.109 0.891 17 C -0.162 4.162 18 O -0.383 6.383 19 C 0.082 3.918 20 C -0.115 4.115 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.111 4.111 24 C -0.145 4.145 25 H 0.067 0.933 26 H 0.008 0.992 27 H 0.044 0.956 28 H 0.265 0.735 29 H 0.407 0.593 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.177 -9.974 -20.437 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.188 4.188 7 N -0.558 5.558 8 Si 0.800 3.200 9 H -0.180 1.180 10 H -0.211 1.211 11 H -0.204 1.204 12 N -0.350 5.350 13 C 0.281 3.719 14 O -0.473 6.473 15 C 0.018 3.982 16 H 0.127 0.873 17 C -0.219 4.219 18 O -0.302 6.302 19 C 0.025 3.975 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.160 4.160 23 C -0.149 4.149 24 C -0.183 4.183 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.242 0.758 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.923 -8.830 -20.316 22.496 hybrid contribution -0.089 -0.158 1.240 1.253 sum 3.833 -8.988 -19.076 21.433 Atomic orbital electron populations 1.21906 0.98332 0.99607 0.99433 1.18357 0.91123 0.91868 0.81967 0.98776 1.21577 1.32570 1.13594 0.90556 0.90454 1.25856 0.94859 0.95587 1.02494 1.70073 1.37112 1.24023 1.24582 0.85243 0.78080 0.78519 0.78159 1.18033 1.21101 1.20426 1.46195 1.65283 1.14215 1.09281 1.21275 0.77636 0.87273 0.85756 1.90639 1.52263 1.18630 1.85787 1.21960 0.99466 0.91603 0.85158 0.87315 1.22226 0.93796 1.01479 1.04425 1.88075 1.92560 1.35125 1.14466 1.22452 0.95049 0.97689 0.82309 1.21602 1.00121 0.99349 0.94232 1.21492 0.96625 1.01716 0.94825 1.21598 0.95114 1.00365 0.98947 1.21487 1.00874 0.99783 0.92714 1.22084 0.96512 1.01055 0.98653 0.91431 0.97307 0.93710 0.92553 0.75775 0.93117 0.89448 0.88542 0.89829 0.91112 0.92977 0.90348 0.90393 0.92805 0.90030 0.90428 0.91314 0.92696 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 2 C 0.27 14.40 2.56 44.25 0.11 14.51 16 3 H -0.01 -0.36 7.58 -2.39 -0.02 -0.38 16 4 C -0.54 -28.98 8.73 25.60 0.22 -28.76 16 5 H 0.08 3.78 7.74 -2.91 -0.02 3.76 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.26 16 8 Si 0.98 41.98 29.54 68.60 2.03 44.01 16 9 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 12 N -0.70 -29.67 4.96 -446.10 -2.21 -31.88 16 13 C 0.49 21.16 7.20 87.65 0.63 21.79 16 14 O -0.59 -32.23 16.16 16.00 0.26 -31.97 16 15 C 0.08 2.39 2.93 29.84 0.09 2.47 16 16 H 0.11 2.60 7.62 -2.39 -0.02 2.58 16 17 C -0.16 -3.79 9.42 71.98 0.68 -3.11 16 18 O -0.38 -12.53 9.17 -129.94 -1.19 -13.72 16 19 C 0.08 1.87 2.40 30.59 0.07 1.95 16 20 C -0.12 -2.30 5.57 30.59 0.17 -2.13 16 21 C -0.11 -1.47 5.92 30.59 0.18 -1.29 16 22 C -0.12 -1.69 5.92 30.60 0.18 -1.50 16 23 C -0.11 -1.72 5.92 30.60 0.18 -1.54 16 24 C -0.15 -3.28 5.53 30.59 0.17 -3.11 16 25 H 0.07 3.84 6.07 -2.39 -0.01 3.83 16 26 H 0.01 0.41 8.14 -2.38 -0.02 0.40 16 27 H 0.04 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 29 H 0.41 13.98 7.96 -92.71 -0.74 13.25 16 30 H 0.05 1.39 8.14 -2.39 -0.02 1.38 16 31 H 0.09 1.80 7.56 -2.38 -0.02 1.78 16 32 H 0.10 1.62 7.97 -2.39 -0.02 1.60 16 33 H 0.08 1.48 7.62 -2.39 -0.02 1.46 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.05 1.30 7.96 -2.39 -0.02 1.28 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -72.24 343.23 3.16 -69.08 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.23 Total: 23.70 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: 3.81 Total: -5.95 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -1.97 Total: -85.15 kcal Atomic # 8 Polarization: -44.76 SS G_CDS: -0.93 Total: -45.70 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -72.24 3.16 -69.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072571423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.008 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds