Wall clock time and date at job start Mon Mar 30 2020 01:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.46945 * 2 1 4 4 C 1.37101 * 120.00118 * 86.05749 * 3 2 1 5 5 H 1.08002 * 119.99982 * 173.46558 * 4 3 2 6 6 C 1.38952 * 119.99766 * 353.73785 * 4 3 2 7 7 N 1.31407 * 120.00231 * 344.42233 * 6 4 3 8 8 Si 1.86800 * 119.99926 * 164.42686 * 6 4 3 9 9 H 1.48503 * 109.47090 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47278 * 119.99931 * 8 6 4 11 11 H 1.48499 * 109.47051 * 240.00047 * 8 6 4 12 12 C 1.34773 * 120.00124 * 266.05235 * 3 2 1 13 13 O 1.21292 * 119.99749 * 4.62337 * 12 3 2 14 14 C 1.50700 * 120.00203 * 184.61928 * 12 3 2 15 15 H 1.08999 * 109.47187 * 309.37648 * 14 12 3 16 16 C 1.52996 * 109.47118 * 69.37682 * 14 12 3 17 17 O 1.42905 * 109.47150 * 189.37540 * 14 12 3 18 18 C 1.42903 * 113.99711 * 150.00049 * 17 14 12 19 19 C 1.53005 * 109.46970 * 269.99955 * 18 17 14 20 20 C 1.52998 * 109.46847 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47304 * 60.00106 * 20 19 18 22 22 C 1.53005 * 109.47082 * 299.99750 * 21 20 19 23 23 C 1.52998 * 109.46847 * 59.99971 * 22 21 20 24 24 H 1.08999 * 109.47162 * 306.78927 * 1 2 3 25 25 H 1.09000 * 109.47072 * 66.79405 * 1 2 3 26 26 H 1.09006 * 109.46839 * 186.79431 * 1 2 3 27 27 H 1.09000 * 109.47264 * 239.99971 * 2 1 3 28 28 H 1.09006 * 109.46863 * 120.00141 * 2 1 3 29 29 H 0.96997 * 120.00232 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47267 * 305.11675 * 16 14 12 31 31 H 1.08995 * 109.47209 * 65.11881 * 16 14 12 32 32 H 1.09002 * 109.47385 * 185.12040 * 16 14 12 33 33 H 1.09004 * 109.47136 * 30.00088 * 18 17 14 34 34 H 1.09003 * 109.46785 * 300.00103 * 19 18 17 35 35 H 1.08997 * 109.46892 * 60.00537 * 19 18 17 36 36 H 1.09004 * 109.46906 * 299.99916 * 20 19 18 37 37 H 1.09002 * 109.47044 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.46833 * 180.02562 * 21 20 19 39 39 H 1.08991 * 109.47166 * 60.00135 * 21 20 19 40 40 H 1.09003 * 109.46785 * 300.00226 * 22 21 20 41 41 H 1.08997 * 109.46892 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47044 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.47200 * 59.99772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1698 2.0547 1.1845 5 1 2.6280 3.0327 1.1948 6 6 1.7391 1.4766 2.3724 7 7 0.9243 0.4461 2.3441 8 14 2.3182 2.1647 4.0097 9 1 3.2229 3.3176 3.7700 10 1 1.1444 2.6133 4.8011 11 1 3.0471 1.1104 4.7596 12 6 2.3187 1.9897 -1.1644 13 8 2.1059 1.4248 -2.2164 14 6 2.9187 3.3721 -1.1593 15 1 2.3172 4.0270 -0.5290 16 6 4.3457 3.3066 -0.6113 17 8 2.9436 3.8855 -2.4927 18 6 2.8309 5.3080 -2.5700 19 6 1.3547 5.6979 -2.6697 20 6 1.2341 7.2208 -2.7531 21 6 1.9793 7.7245 -3.9907 22 6 3.4555 7.3346 -3.8910 23 6 3.5762 5.8117 -3.8076 24 1 -0.3633 0.6154 0.8230 25 1 -0.3633 0.4049 -0.9445 26 1 -0.3633 -1.0205 0.1216 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6239 0.0423 3.1733 30 1 4.3368 2.8313 0.3696 31 1 4.9695 2.7260 -1.2908 32 1 4.7474 4.3160 -0.5222 33 1 3.2655 5.7560 -1.6763 34 1 0.9202 5.2498 -3.5634 35 1 0.8237 5.3387 -1.7882 36 1 1.6687 7.6692 -1.8596 37 1 0.1825 7.4986 -2.8246 38 1 1.8937 8.8096 -4.0498 39 1 1.5447 7.2762 -4.8840 40 1 3.8901 7.7830 -2.9975 41 1 3.9863 7.6931 -4.7729 42 1 4.6278 5.5339 -3.7361 43 1 3.1415 5.3633 -4.7010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074531914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:01 Heat of formation + Delta-G solvation = -88.945486 kcal Electronic energy + Delta-G solvation = -22075.021200 eV Core-core repulsion = 18927.149076 eV Total energy + Delta-G solvation = -3147.872124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.31523 -38.29762 -36.12545 -34.86275 -31.70197 -31.22098 -30.70852 -29.48049 -28.60527 -24.96026 -23.79015 -22.50270 -22.15665 -21.07910 -19.80441 -19.07513 -17.21890 -16.69895 -15.61968 -15.17706 -14.68056 -14.44568 -14.18298 -14.10650 -13.82181 -13.29384 -13.20088 -12.93073 -12.48637 -12.35876 -12.14827 -12.01739 -11.72365 -11.43813 -11.38257 -11.18630 -11.06383 -10.95313 -10.71240 -10.62641 -10.49853 -10.39980 -10.31883 -10.16079 -10.03272 -9.74182 -9.03339 -8.83901 -8.14438 -7.77793 -6.30497 -3.89887 3.05850 3.17352 3.19534 3.83026 3.91464 4.09490 4.75342 4.80711 4.90107 5.03195 5.08145 5.28750 5.35294 5.45060 5.54934 5.56354 5.64354 5.68050 5.80524 5.89437 5.96759 6.02014 6.04969 6.14268 6.24082 6.28250 6.30497 6.42014 6.47163 6.51695 6.67733 6.75825 6.87688 6.98088 7.12934 7.29074 7.48035 7.75477 7.80700 7.93136 8.46654 9.05852 9.55590 9.95878 10.59726 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.005378 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.190176 B = 5205.626577 C = 5670.867797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.140 3.860 3 N -0.442 5.442 4 C -0.332 4.332 5 H 0.101 0.899 6 C 0.032 3.968 7 N -0.859 5.859 8 Si 0.919 3.081 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.279 1.279 12 C 0.457 3.543 13 O -0.592 6.592 14 C 0.088 3.912 15 H 0.074 0.926 16 C -0.169 4.169 17 O -0.355 6.355 18 C 0.089 3.911 19 C -0.143 4.143 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.114 4.114 24 H 0.092 0.908 25 H 0.015 0.985 26 H 0.031 0.969 27 H 0.036 0.964 28 H 0.094 0.906 29 H 0.266 0.734 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.189 11.260 -4.267 12.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 N -0.162 5.162 4 C -0.460 4.460 5 H 0.119 0.881 6 C -0.172 4.172 7 N -0.499 5.499 8 Si 0.746 3.254 9 H -0.194 1.194 10 H -0.208 1.208 11 H -0.205 1.205 12 C 0.244 3.756 13 O -0.477 6.477 14 C 0.027 3.973 15 H 0.092 0.908 16 C -0.227 4.227 17 O -0.273 6.273 18 C 0.031 3.969 19 C -0.181 4.181 20 C -0.154 4.154 21 C -0.159 4.159 22 C -0.153 4.153 23 C -0.152 4.152 24 H 0.111 0.889 25 H 0.034 0.966 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.112 0.888 29 H 0.077 0.923 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.999 10.708 -4.785 12.106 hybrid contribution 0.108 0.447 1.271 1.352 sum 3.108 11.155 -3.514 12.102 Atomic orbital electron populations 1.22068 0.96676 1.00210 1.00232 1.21242 0.94653 0.82469 0.99863 1.43806 1.55814 1.11986 1.04587 1.19801 1.39532 1.02920 0.83725 0.88105 1.25224 0.95498 0.96842 0.99603 1.70296 1.29108 1.23191 1.27297 0.85992 0.78701 0.78862 0.81889 1.19380 1.20780 1.20524 1.19719 0.84306 0.87458 0.84086 1.90536 1.59215 1.66799 1.31162 1.21724 0.96585 0.95307 0.83707 0.90812 1.22242 0.95883 1.01536 1.03003 1.88040 1.93886 1.19156 1.26248 1.22068 0.94585 0.82449 0.97834 1.22066 0.97494 0.95405 1.03141 1.21497 1.00206 0.95597 0.98082 1.21572 0.95581 1.00140 0.98572 1.21503 0.96573 0.95452 1.01769 1.21558 1.00569 0.94856 0.98224 0.88930 0.96617 0.94951 0.94601 0.88797 0.92333 0.89429 0.92225 0.93129 0.92640 0.91149 0.91623 0.92078 0.91929 0.92212 0.91869 0.92012 0.91761 0.91488 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 9.36 37.16 0.35 -2.89 16 2 C 0.14 3.54 5.40 -4.04 -0.02 3.52 16 3 N -0.44 -11.30 2.63 -114.81 -0.30 -11.60 16 4 C -0.33 -8.15 8.25 -14.93 -0.12 -8.27 16 5 H 0.10 2.31 5.17 -52.49 -0.27 2.04 16 6 C 0.03 0.77 5.18 -17.47 -0.09 0.68 16 7 N -0.86 -21.32 7.50 55.50 0.42 -20.90 16 8 Si 0.92 18.74 29.58 -169.99 -5.03 13.71 16 9 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 12 C 0.46 11.68 6.99 -10.99 -0.08 11.60 16 13 O -0.59 -17.01 16.09 -14.18 -0.23 -17.24 16 14 C 0.09 1.85 2.08 -27.88 -0.06 1.79 16 15 H 0.07 1.51 6.77 -51.93 -0.35 1.15 16 16 C -0.17 -3.11 9.15 37.16 0.34 -2.77 16 17 O -0.36 -7.28 9.18 -54.96 -0.50 -7.79 16 18 C 0.09 1.40 2.40 -26.73 -0.06 1.33 16 19 C -0.14 -2.12 5.53 -26.73 -0.15 -2.27 16 20 C -0.12 -1.33 5.92 -26.73 -0.16 -1.49 16 21 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 22 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 23 C -0.11 -1.51 5.57 -26.73 -0.15 -1.66 16 24 H 0.09 2.38 6.03 -51.93 -0.31 2.07 16 25 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.04 0.91 7.37 -51.93 -0.38 0.53 16 28 H 0.09 2.41 6.09 -51.93 -0.32 2.09 16 29 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 30 H 0.09 1.68 6.08 -51.93 -0.32 1.36 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.78 8.02 -51.93 -0.42 0.37 16 33 H 0.06 0.82 7.67 -51.93 -0.40 0.42 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.06 7.96 -51.93 -0.41 0.64 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -28.79 331.18 -8.56 -37.35 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -7.39 Total: 4.64 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.52 Total: -3.17 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.11 Total: -32.50 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.73 Total: -25.03 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.79 -8.56 -37.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.591 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds