Wall clock time and date at job start Mon Mar 30 2020 01:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46493 * 109.46945 * 2 1 4 4 C 1.37101 * 120.00118 * 86.05749 * 3 2 1 5 5 H 1.08002 * 119.99982 * 173.46558 * 4 3 2 6 6 C 1.38952 * 119.99766 * 353.73785 * 4 3 2 7 7 N 1.31407 * 120.00231 * 344.42233 * 6 4 3 8 8 Si 1.86800 * 119.99926 * 164.42686 * 6 4 3 9 9 H 1.48503 * 109.47090 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47278 * 119.99931 * 8 6 4 11 11 H 1.48499 * 109.47051 * 240.00047 * 8 6 4 12 12 C 1.34773 * 120.00124 * 266.05235 * 3 2 1 13 13 O 1.21292 * 119.99749 * 4.62337 * 12 3 2 14 14 C 1.50700 * 120.00203 * 184.61928 * 12 3 2 15 15 H 1.08999 * 109.47187 * 309.37648 * 14 12 3 16 16 C 1.52996 * 109.47118 * 69.37682 * 14 12 3 17 17 O 1.42905 * 109.47150 * 189.37540 * 14 12 3 18 18 C 1.42903 * 113.99711 * 150.00049 * 17 14 12 19 19 C 1.53005 * 109.46970 * 269.99955 * 18 17 14 20 20 C 1.52998 * 109.46847 * 180.02562 * 19 18 17 21 21 C 1.53001 * 109.47304 * 60.00106 * 20 19 18 22 22 C 1.53005 * 109.47082 * 299.99750 * 21 20 19 23 23 C 1.52998 * 109.46847 * 59.99971 * 22 21 20 24 24 H 1.08999 * 109.47162 * 306.78927 * 1 2 3 25 25 H 1.09000 * 109.47072 * 66.79405 * 1 2 3 26 26 H 1.09006 * 109.46839 * 186.79431 * 1 2 3 27 27 H 1.09000 * 109.47264 * 239.99971 * 2 1 3 28 28 H 1.09006 * 109.46863 * 120.00141 * 2 1 3 29 29 H 0.96997 * 120.00232 * 179.97438 * 7 6 4 30 30 H 1.09000 * 109.47267 * 305.11675 * 16 14 12 31 31 H 1.08995 * 109.47209 * 65.11881 * 16 14 12 32 32 H 1.09002 * 109.47385 * 185.12040 * 16 14 12 33 33 H 1.09004 * 109.47136 * 30.00088 * 18 17 14 34 34 H 1.09003 * 109.46785 * 300.00103 * 19 18 17 35 35 H 1.08997 * 109.46892 * 60.00537 * 19 18 17 36 36 H 1.09004 * 109.46906 * 299.99916 * 20 19 18 37 37 H 1.09002 * 109.47044 * 179.97438 * 20 19 18 38 38 H 1.09006 * 109.46833 * 180.02562 * 21 20 19 39 39 H 1.08991 * 109.47166 * 60.00135 * 21 20 19 40 40 H 1.09003 * 109.46785 * 300.00226 * 22 21 20 41 41 H 1.08997 * 109.46892 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47044 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.47200 * 59.99772 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1698 2.0547 1.1845 5 1 2.6280 3.0327 1.1948 6 6 1.7391 1.4766 2.3724 7 7 0.9243 0.4461 2.3441 8 14 2.3182 2.1647 4.0097 9 1 3.2229 3.3176 3.7700 10 1 1.1444 2.6133 4.8011 11 1 3.0471 1.1104 4.7596 12 6 2.3187 1.9897 -1.1644 13 8 2.1059 1.4248 -2.2164 14 6 2.9187 3.3721 -1.1593 15 1 2.3172 4.0270 -0.5290 16 6 4.3457 3.3066 -0.6113 17 8 2.9436 3.8855 -2.4927 18 6 2.8309 5.3080 -2.5700 19 6 1.3547 5.6979 -2.6697 20 6 1.2341 7.2208 -2.7531 21 6 1.9793 7.7245 -3.9907 22 6 3.4555 7.3346 -3.8910 23 6 3.5762 5.8117 -3.8076 24 1 -0.3633 0.6154 0.8230 25 1 -0.3633 0.4049 -0.9445 26 1 -0.3633 -1.0205 0.1216 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.6239 0.0423 3.1733 30 1 4.3368 2.8313 0.3696 31 1 4.9695 2.7260 -1.2908 32 1 4.7474 4.3160 -0.5222 33 1 3.2655 5.7560 -1.6763 34 1 0.9202 5.2498 -3.5634 35 1 0.8237 5.3387 -1.7882 36 1 1.6687 7.6692 -1.8596 37 1 0.1825 7.4986 -2.8246 38 1 1.8937 8.8096 -4.0498 39 1 1.5447 7.2762 -4.8840 40 1 3.8901 7.7830 -2.9975 41 1 3.9863 7.6931 -4.7729 42 1 4.6278 5.5339 -3.7361 43 1 3.1415 5.3633 -4.7010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074531914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:00 Heat of formation + Delta-G solvation = -103.369203 kcal Electronic energy + Delta-G solvation = -22075.646659 eV Core-core repulsion = 18927.149076 eV Total energy + Delta-G solvation = -3148.497583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95347 -39.78668 -37.53821 -36.79568 -33.54327 -32.95032 -31.70121 -31.08966 -29.99752 -26.87469 -25.48485 -23.71206 -23.40247 -22.62895 -21.09924 -20.72089 -19.02317 -18.30631 -17.28566 -16.63360 -16.28023 -16.03111 -15.70496 -15.32587 -15.24790 -14.79139 -14.66159 -14.39599 -14.23320 -13.77573 -13.67067 -13.17025 -13.11722 -13.08163 -12.98941 -12.83298 -12.60144 -12.45525 -12.12740 -12.04871 -12.01472 -11.82877 -11.69237 -11.47136 -11.44755 -11.17268 -10.82270 -10.44573 -10.05769 -9.76286 -8.17883 -5.84397 1.42750 1.51887 1.63331 1.98454 2.22906 2.48753 3.14945 3.27335 3.79077 3.81550 4.00910 4.08675 4.20810 4.24931 4.28107 4.32671 4.39913 4.56373 4.57028 4.60144 4.68906 4.78278 4.85231 4.88396 4.97507 4.99636 5.09611 5.12690 5.13525 5.22768 5.23346 5.26281 5.31476 5.40598 5.42607 5.47150 5.52889 5.80895 5.89826 6.33837 6.54817 7.13924 7.59977 8.00559 8.73670 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021952 B = 0.005378 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.190176 B = 5205.626577 C = 5670.867797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.140 3.860 3 N -0.446 5.446 4 C -0.354 4.354 5 H 0.116 0.884 6 C -0.006 4.006 7 N -0.881 5.881 8 Si 0.990 3.010 9 H -0.255 1.255 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.435 3.565 13 O -0.638 6.638 14 C 0.098 3.902 15 H 0.079 0.921 16 C -0.159 4.159 17 O -0.384 6.384 18 C 0.080 3.920 19 C -0.143 4.143 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.109 4.109 23 C -0.112 4.112 24 H 0.079 0.921 25 H 0.001 0.999 26 H 0.052 0.948 27 H 0.023 0.977 28 H 0.090 0.910 29 H 0.270 0.730 30 H 0.080 0.920 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.069 0.931 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.207 13.783 -3.138 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.017 3.983 3 N -0.165 5.165 4 C -0.480 4.480 5 H 0.134 0.866 6 C -0.208 4.208 7 N -0.520 5.520 8 Si 0.813 3.187 9 H -0.178 1.178 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.224 3.776 13 O -0.527 6.527 14 C 0.037 3.963 15 H 0.096 0.904 16 C -0.217 4.217 17 O -0.303 6.303 18 C 0.023 3.977 19 C -0.181 4.181 20 C -0.148 4.148 21 C -0.157 4.157 22 C -0.147 4.147 23 C -0.150 4.150 24 H 0.098 0.902 25 H 0.020 0.980 26 H 0.071 0.929 27 H 0.042 0.958 28 H 0.108 0.892 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.019 13.246 -3.647 14.314 hybrid contribution -0.278 -0.405 0.920 1.043 sum 3.741 12.841 -2.728 13.650 Atomic orbital electron populations 1.21895 0.95898 1.01072 0.98734 1.21211 0.95253 0.82949 0.98898 1.44053 1.55096 1.11972 1.05350 1.20206 1.40499 1.03808 0.83509 0.86608 1.26096 0.94983 0.97073 1.02654 1.70374 1.29233 1.23949 1.28403 0.84917 0.78161 0.78503 0.77096 1.17837 1.20836 1.20597 1.20605 0.84371 0.89214 0.83364 1.90484 1.61246 1.68368 1.32564 1.21557 0.97782 0.92490 0.84471 0.90375 1.22161 0.93982 1.03515 1.01997 1.88014 1.94096 1.22235 1.25912 1.22423 0.95494 0.80071 0.99738 1.22058 0.96734 0.98121 1.01202 1.21488 1.01257 0.92628 0.99457 1.21586 0.95140 1.01546 0.97453 1.21503 0.97021 0.92836 1.03290 1.21585 1.00059 0.97074 0.96237 0.90246 0.97986 0.92925 0.95833 0.89195 0.91993 0.90112 0.92970 0.89577 0.91166 0.93013 0.93744 0.90953 0.91127 0.89750 0.92399 0.90788 0.89852 0.91269 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 9.36 71.98 0.67 -5.14 16 2 C 0.14 7.25 5.40 86.38 0.47 7.71 16 3 N -0.45 -23.27 2.63 -635.54 -1.67 -24.94 16 4 C -0.35 -17.22 8.25 84.04 0.69 -16.53 16 5 H 0.12 5.17 5.17 -2.91 -0.02 5.16 16 6 C -0.01 -0.30 5.18 84.93 0.44 0.14 16 7 N -0.88 -43.41 7.50 21.66 0.16 -43.24 16 8 Si 0.99 37.18 29.58 68.60 2.03 39.21 16 9 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 10 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 11 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 12 C 0.44 22.90 6.99 87.66 0.61 23.51 16 13 O -0.64 -38.28 16.09 15.80 0.25 -38.02 16 14 C 0.10 4.14 2.08 29.85 0.06 4.20 16 15 H 0.08 3.17 6.77 -2.39 -0.02 3.16 16 16 C -0.16 -5.66 9.15 71.98 0.66 -5.01 16 17 O -0.38 -15.93 9.18 -130.11 -1.19 -17.12 16 18 C 0.08 2.45 2.40 30.60 0.07 2.52 16 19 C -0.14 -4.24 5.53 30.59 0.17 -4.07 16 20 C -0.11 -2.32 5.92 30.59 0.18 -2.14 16 21 C -0.12 -2.09 5.92 30.60 0.18 -1.91 16 22 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 23 C -0.11 -2.80 5.57 30.59 0.17 -2.63 16 24 H 0.08 4.15 6.03 -2.39 -0.01 4.13 16 25 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.05 2.31 8.14 -2.38 -0.02 2.29 16 27 H 0.02 1.25 7.37 -2.39 -0.02 1.23 16 28 H 0.09 4.71 6.09 -2.38 -0.01 4.69 16 29 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 30 H 0.08 2.98 6.08 -2.39 -0.01 2.97 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.09 2.42 8.02 -2.39 -0.02 2.41 16 33 H 0.07 1.92 7.67 -2.38 -0.02 1.90 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.04 1.46 7.96 -2.39 -0.02 1.44 16 36 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 38 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -63.22 331.18 5.11 -58.10 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.97 Total: 27.08 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 4.56 Total: -1.06 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -1.51 Total: -68.18 kcal Atomic # 8 Polarization: -54.20 SS G_CDS: -0.94 Total: -55.14 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Total: -63.22 5.11 -58.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074531914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.265 kcal (2) G-P(sol) polarization free energy of solvation -63.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds