Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46904 * 2 1 4 4 C 1.42900 * 113.99997 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47132 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.46927 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47004 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99978 * 353.54079 * 7 6 5 9 9 N 1.34775 * 119.99961 * 173.53744 * 7 6 5 10 10 C 1.37092 * 119.99795 * 356.29337 * 9 7 6 11 11 H 1.08000 * 119.99837 * 232.08991 * 10 9 7 12 12 C 1.38947 * 120.00001 * 52.09324 * 10 9 7 13 13 N 1.31416 * 119.99942 * 26.89457 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 206.88906 * 12 10 9 15 15 H 1.48497 * 109.47154 * 90.00181 * 14 12 10 16 16 H 1.48499 * 109.47226 * 209.99968 * 14 12 10 17 17 H 1.48499 * 109.47336 * 330.00090 * 14 12 10 18 18 C 1.46499 * 119.99992 * 176.02453 * 9 7 6 19 19 C 1.54272 * 110.02852 * 237.90695 * 18 9 7 20 20 C 1.54971 * 104.15743 * 217.13423 * 19 18 9 21 21 C 1.54884 * 102.77813 * 37.88759 * 20 19 18 22 22 C 1.53867 * 110.03720 * 120.68850 * 18 9 7 23 23 H 1.09000 * 109.46856 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46914 * 299.99663 * 1 2 3 25 25 H 1.08998 * 109.46825 * 59.99978 * 1 2 3 26 26 H 1.09004 * 109.46778 * 240.00557 * 2 1 3 27 27 H 1.08996 * 109.47250 * 119.99702 * 2 1 3 28 28 H 1.09005 * 109.47023 * 60.00158 * 4 3 2 29 29 H 1.09002 * 109.47186 * 299.99816 * 4 3 2 30 30 H 1.08996 * 109.47227 * 59.99879 * 5 4 3 31 31 H 1.09003 * 109.47314 * 299.99656 * 5 4 3 32 32 H 1.09005 * 109.47071 * 60.00154 * 6 5 4 33 33 H 1.08989 * 109.46829 * 299.99976 * 6 5 4 34 34 H 0.96998 * 119.99456 * 184.89924 * 13 12 10 35 35 H 1.09008 * 110.01647 * 359.29533 * 18 9 7 36 36 H 1.09000 * 110.48846 * 335.78134 * 19 18 9 37 37 H 1.09005 * 110.48644 * 98.42687 * 19 18 9 38 38 H 1.09005 * 110.71708 * 279.57185 * 20 19 18 39 39 H 1.08998 * 110.91688 * 156.29770 * 20 19 18 40 40 H 1.09001 * 110.48663 * 203.40844 * 21 20 19 41 41 H 1.09002 * 110.59820 * 80.81607 * 21 20 19 42 42 H 1.09000 * 110.03457 * 238.56822 * 22 18 9 43 43 H 1.09005 * 110.03138 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3506 3.0593 0.0001 7 6 5.7392 4.5153 0.0002 8 8 4.8871 5.3704 -0.1180 9 7 7.0335 4.8674 0.1316 10 6 7.9876 3.9055 0.3413 11 1 8.6774 4.0002 1.1669 12 6 8.0671 2.8090 -0.5083 13 7 7.6494 2.9084 -1.7503 14 14 8.7678 1.1934 0.1149 15 1 7.6730 0.3636 0.6786 16 1 9.4113 0.4667 -1.0089 17 1 9.7763 1.4656 1.1704 18 6 7.4216 6.2774 0.0444 19 6 8.4528 6.4726 -1.0863 20 6 9.4258 7.5434 -0.5311 21 6 9.5357 7.1630 0.9662 22 6 8.1095 6.7164 1.3488 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 3.8333 0.9768 -0.8909 29 1 3.8341 0.9765 0.8892 30 1 3.4229 3.4215 0.8905 31 1 3.4222 3.4225 -0.8894 32 1 5.7534 2.5762 -0.8901 33 1 5.7533 2.5754 0.8898 34 1 7.6385 2.1252 -2.3225 35 1 6.5429 6.8954 -0.1407 36 1 8.9833 5.5411 -1.2839 37 1 7.9632 6.8332 -1.9910 38 1 9.0058 8.5427 -0.6460 39 1 10.3980 7.4762 -1.0192 40 1 9.8365 8.0273 1.5583 41 1 10.2416 6.3437 1.1029 42 1 7.5653 7.5481 1.7963 43 1 8.1542 5.8805 2.0470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084220229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = -104.070482 kcal Electronic energy + Delta-G solvation = -21560.334912 eV Core-core repulsion = 18411.806919 eV Total energy + Delta-G solvation = -3148.527993 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.98440 -37.83618 -36.68528 -34.12577 -33.09238 -31.44595 -30.68675 -27.92299 -27.40127 -25.72789 -24.53261 -22.69207 -21.36979 -19.97472 -19.30060 -19.23684 -16.77030 -16.11295 -16.07231 -15.68772 -15.20303 -14.67084 -14.43779 -14.36467 -13.91642 -13.37594 -13.29839 -12.64636 -12.56389 -12.36876 -12.20761 -11.66166 -11.48618 -11.35021 -11.29098 -11.04478 -10.84410 -10.69355 -10.57987 -10.47680 -10.43355 -10.33376 -10.32366 -10.06743 -9.95317 -9.62470 -9.33883 -8.72919 -8.25322 -7.31429 -6.42461 -4.20838 3.08696 3.19861 3.20841 3.86125 4.06315 4.16990 4.80925 4.88279 5.06073 5.21693 5.37989 5.39457 5.39956 5.51813 5.56428 5.65484 5.67094 5.85522 5.90271 6.08321 6.10938 6.24267 6.24518 6.30509 6.33362 6.36757 6.41804 6.52594 6.55726 6.57621 6.75808 6.79389 6.95030 6.99649 7.13116 7.18979 7.34192 7.44006 7.49876 8.02031 8.64920 8.91605 9.62801 10.06292 10.58193 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.005253 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.744653 B = 5329.458835 C = 6276.636217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.390 6.390 4 C 0.064 3.936 5 C -0.100 4.100 6 C -0.126 4.126 7 C 0.512 3.488 8 O -0.612 6.612 9 N -0.448 5.448 10 C -0.335 4.335 11 H 0.082 0.918 12 C 0.055 3.945 13 N -0.845 5.845 14 Si 0.892 3.108 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.267 1.267 18 C 0.132 3.868 19 C -0.121 4.121 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.127 4.127 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.269 0.731 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -3.082 2.942 4.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.310 6.310 4 C -0.012 4.012 5 C -0.138 4.138 6 C -0.166 4.166 7 C 0.303 3.697 8 O -0.499 6.499 9 N -0.168 5.168 10 C -0.462 4.462 11 H 0.100 0.900 12 C -0.153 4.153 13 N -0.480 5.480 14 Si 0.718 3.282 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.192 1.192 18 C 0.028 3.972 19 C -0.159 4.159 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.165 4.165 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.880 -2.569 2.691 4.705 hybrid contribution 0.700 -1.272 0.099 1.455 sum -2.179 -3.841 2.790 5.223 Atomic orbital electron populations 1.21733 0.94122 1.01798 1.03081 1.22409 0.95316 0.84621 0.99802 1.87891 1.22114 1.25596 1.95401 1.22601 0.80029 0.98809 0.99778 1.21269 0.96234 0.92770 1.03509 1.21584 0.93413 0.96375 1.05234 1.20249 0.82171 0.90128 0.77191 1.90497 1.50309 1.52875 1.56182 1.43451 1.04900 1.04159 1.64246 1.19133 1.15291 1.00696 1.11108 0.90009 1.25473 0.96035 1.00428 0.93326 1.70169 1.44315 1.29818 1.03682 0.86491 0.79681 0.83055 0.79007 1.19888 1.20996 1.19182 1.21574 0.96629 0.85760 0.93272 1.22600 0.96711 0.99511 0.97054 1.22454 0.99145 0.98532 0.95961 1.22254 0.97453 0.99767 0.95914 1.22400 0.95254 1.00200 0.98663 0.91471 0.91942 0.91913 0.93693 0.93737 0.93516 0.93669 0.91674 0.91132 0.87367 0.90428 0.92090 0.90524 0.88993 0.93171 0.92604 0.92463 0.93031 0.91722 0.92996 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.72 6.66 37.16 0.25 0.96 16 3 O -0.39 -6.63 10.34 -35.23 -0.36 -6.99 16 4 C 0.06 1.11 5.94 37.16 0.22 1.33 16 5 C -0.10 -2.03 4.90 -26.73 -0.13 -2.16 16 6 C -0.13 -2.84 3.86 -27.88 -0.11 -2.95 16 7 C 0.51 13.08 7.26 -10.99 -0.08 13.00 16 8 O -0.61 -16.92 15.34 5.54 0.09 -16.83 16 9 N -0.45 -10.97 2.37 -106.54 -0.25 -11.22 16 10 C -0.33 -8.09 6.79 -14.94 -0.10 -8.19 16 11 H 0.08 1.96 7.29 -52.49 -0.38 1.57 16 12 C 0.05 1.31 3.35 -17.47 -0.06 1.25 16 13 N -0.84 -21.26 11.58 55.50 0.64 -20.62 16 14 Si 0.89 18.47 29.63 -169.99 -5.04 13.43 16 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 16 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 18 C 0.13 2.92 3.29 -66.81 -0.22 2.70 16 19 C -0.12 -2.49 6.42 -25.03 -0.16 -2.65 16 20 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 21 C -0.12 -1.91 6.83 -25.07 -0.17 -2.08 16 22 C -0.13 -2.39 6.26 -25.61 -0.16 -2.55 16 23 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.07 1.54 8.03 -51.93 -0.42 1.12 16 32 H 0.11 2.56 5.46 -51.93 -0.28 2.27 16 33 H 0.08 1.68 7.75 -51.94 -0.40 1.28 16 34 H 0.27 6.42 8.32 -40.82 -0.34 6.08 16 35 H 0.08 1.82 6.95 -51.92 -0.36 1.46 16 36 H 0.09 2.15 7.02 -51.93 -0.36 1.78 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.40 6.95 -51.93 -0.36 1.04 16 LS Contribution 341.08 15.07 5.14 5.14 Total: -1.00 -27.75 341.08 -7.92 -35.68 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.63 Total: 6.19 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.51 Total: -4.77 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.39 Total: -31.84 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.28 Total: -23.83 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.04 Total: 13.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.75 -7.92 -35.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084220229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.393 kcal (2) G-P(sol) polarization free energy of solvation -27.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds