Wall clock time and date at job start Mon Mar 30 2020 01:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42900 * 109.46904 * 2 1 4 4 C 1.42900 * 113.99997 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47132 * 180.02562 * 4 3 2 6 6 C 1.53009 * 109.46927 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47004 * 179.97438 * 6 5 4 8 8 O 1.21295 * 119.99978 * 353.54079 * 7 6 5 9 9 N 1.34775 * 119.99961 * 173.53744 * 7 6 5 10 10 C 1.37092 * 119.99795 * 356.29337 * 9 7 6 11 11 H 1.08000 * 119.99837 * 232.08991 * 10 9 7 12 12 C 1.38947 * 120.00001 * 52.09324 * 10 9 7 13 13 N 1.31416 * 119.99942 * 26.89457 * 12 10 9 14 14 Si 1.86798 * 120.00020 * 206.88906 * 12 10 9 15 15 H 1.48497 * 109.47154 * 90.00181 * 14 12 10 16 16 H 1.48499 * 109.47226 * 209.99968 * 14 12 10 17 17 H 1.48499 * 109.47336 * 330.00090 * 14 12 10 18 18 C 1.46499 * 119.99992 * 176.02453 * 9 7 6 19 19 C 1.54272 * 110.02852 * 237.90695 * 18 9 7 20 20 C 1.54971 * 104.15743 * 217.13423 * 19 18 9 21 21 C 1.54884 * 102.77813 * 37.88759 * 20 19 18 22 22 C 1.53867 * 110.03720 * 120.68850 * 18 9 7 23 23 H 1.09000 * 109.46856 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46914 * 299.99663 * 1 2 3 25 25 H 1.08998 * 109.46825 * 59.99978 * 1 2 3 26 26 H 1.09004 * 109.46778 * 240.00557 * 2 1 3 27 27 H 1.08996 * 109.47250 * 119.99702 * 2 1 3 28 28 H 1.09005 * 109.47023 * 60.00158 * 4 3 2 29 29 H 1.09002 * 109.47186 * 299.99816 * 4 3 2 30 30 H 1.08996 * 109.47227 * 59.99879 * 5 4 3 31 31 H 1.09003 * 109.47314 * 299.99656 * 5 4 3 32 32 H 1.09005 * 109.47071 * 60.00154 * 6 5 4 33 33 H 1.08989 * 109.46829 * 299.99976 * 6 5 4 34 34 H 0.96998 * 119.99456 * 184.89924 * 13 12 10 35 35 H 1.09008 * 110.01647 * 359.29533 * 18 9 7 36 36 H 1.09000 * 110.48846 * 335.78134 * 19 18 9 37 37 H 1.09005 * 110.48644 * 98.42687 * 19 18 9 38 38 H 1.09005 * 110.71708 * 279.57185 * 20 19 18 39 39 H 1.08998 * 110.91688 * 156.29770 * 20 19 18 40 40 H 1.09001 * 110.48663 * 203.40844 * 21 20 19 41 41 H 1.09002 * 110.59820 * 80.81607 * 21 20 19 42 42 H 1.09000 * 110.03457 * 238.56822 * 22 18 9 43 43 H 1.09005 * 110.03138 * 359.97438 * 22 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8253 2.9385 0.0001 6 6 5.3506 3.0593 0.0001 7 6 5.7392 4.5153 0.0002 8 8 4.8871 5.3704 -0.1180 9 7 7.0335 4.8674 0.1316 10 6 7.9876 3.9055 0.3413 11 1 8.6774 4.0002 1.1669 12 6 8.0671 2.8090 -0.5083 13 7 7.6494 2.9084 -1.7503 14 14 8.7678 1.1934 0.1149 15 1 7.6730 0.3636 0.6786 16 1 9.4113 0.4667 -1.0089 17 1 9.7763 1.4656 1.1704 18 6 7.4216 6.2774 0.0444 19 6 8.4528 6.4726 -1.0863 20 6 9.4258 7.5434 -0.5311 21 6 9.5357 7.1630 0.9662 22 6 8.1095 6.7164 1.3488 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 3.8333 0.9768 -0.8909 29 1 3.8341 0.9765 0.8892 30 1 3.4229 3.4215 0.8905 31 1 3.4222 3.4225 -0.8894 32 1 5.7534 2.5762 -0.8901 33 1 5.7533 2.5754 0.8898 34 1 7.6385 2.1252 -2.3225 35 1 6.5429 6.8954 -0.1407 36 1 8.9833 5.5411 -1.2839 37 1 7.9632 6.8332 -1.9910 38 1 9.0058 8.5427 -0.6460 39 1 10.3980 7.4762 -1.0192 40 1 9.8365 8.0273 1.5583 41 1 10.2416 6.3437 1.1029 42 1 7.5653 7.5481 1.7963 43 1 8.1542 5.8805 2.0470 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084220229.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:35 Heat of formation + Delta-G solvation = -118.712551 kcal Electronic energy + Delta-G solvation = -21560.969840 eV Core-core repulsion = 18411.806919 eV Total energy + Delta-G solvation = -3149.162921 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.83702 -39.12565 -38.36625 -36.00628 -34.62298 -33.26332 -31.84933 -29.46711 -29.01946 -27.40933 -26.31169 -23.68094 -22.97391 -21.42983 -21.11771 -20.97829 -18.48949 -17.60559 -17.40155 -17.36548 -17.00112 -16.28061 -15.98806 -15.94945 -15.35488 -14.91104 -14.81281 -14.20712 -14.14190 -13.70257 -13.52759 -13.39002 -13.08972 -12.89731 -12.67945 -12.46032 -12.33643 -12.26449 -12.19793 -12.05906 -11.88293 -11.85739 -11.82576 -11.72994 -11.38509 -11.33594 -10.62396 -10.56993 -10.21658 -9.22579 -8.28865 -6.13775 1.44824 1.51072 1.58970 2.15763 2.34602 2.61215 2.95919 3.16676 3.86616 3.91017 4.01597 4.06359 4.16457 4.19691 4.27816 4.40173 4.47743 4.55724 4.59062 4.64914 4.66930 4.76089 4.79415 4.83320 4.89499 4.91652 5.01297 5.03914 5.07904 5.16571 5.24028 5.24663 5.27612 5.38083 5.42778 5.51242 5.56716 5.65000 6.14531 6.27188 6.72815 7.02612 7.67756 8.13906 8.73117 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.020274 B = 0.005253 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.744653 B = 5329.458835 C = 6276.636217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.413 6.413 4 C 0.073 3.927 5 C -0.091 4.091 6 C -0.115 4.115 7 C 0.488 3.512 8 O -0.647 6.647 9 N -0.449 5.449 10 C -0.348 4.348 11 H 0.085 0.915 12 C 0.027 3.973 13 N -0.875 5.875 14 Si 0.952 3.048 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.261 1.261 18 C 0.117 3.883 19 C -0.117 4.117 20 C -0.112 4.112 21 C -0.107 4.107 22 C -0.121 4.121 23 H 0.095 0.905 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.272 0.728 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 -4.117 4.008 5.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.334 6.334 4 C -0.003 4.003 5 C -0.129 4.129 6 C -0.155 4.155 7 C 0.280 3.720 8 O -0.536 6.536 9 N -0.168 5.168 10 C -0.475 4.475 11 H 0.102 0.898 12 C -0.178 4.178 13 N -0.511 5.511 14 Si 0.775 3.225 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.185 1.185 18 C 0.014 3.986 19 C -0.155 4.155 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.159 4.159 23 H 0.114 0.886 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.857 -3.604 3.768 5.535 hybrid contribution 0.373 -0.918 -0.283 1.030 sum -1.485 -4.522 3.485 5.899 Atomic orbital electron populations 1.21764 0.92490 1.03545 1.02640 1.22738 0.96711 0.82799 1.00931 1.87858 1.21506 1.28415 1.95603 1.22400 0.80822 0.96252 1.00827 1.21121 0.94734 0.95166 1.01896 1.21467 0.94720 0.94340 1.04926 1.20884 0.82393 0.91266 0.77490 1.90456 1.51135 1.53953 1.58045 1.43668 1.04814 1.05269 1.63012 1.19308 1.15404 1.01262 1.11499 0.89754 1.26129 0.95929 1.02769 0.92999 1.70243 1.45279 1.30752 1.04795 0.85567 0.79369 0.79149 0.78388 1.18657 1.21261 1.18517 1.21823 0.96386 0.84524 0.95909 1.22489 0.96982 0.99693 0.96338 1.22424 0.98847 0.97767 0.95900 1.22226 0.95337 1.00945 0.95993 1.22337 0.96956 1.00200 0.96433 0.88606 0.92254 0.92511 0.92758 0.92342 0.92941 0.92006 0.92551 0.93454 0.88332 0.89569 0.91833 0.92998 0.91876 0.94421 0.90737 0.90588 0.89618 0.92056 0.91598 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 10.28 71.98 0.74 -2.12 16 2 C 0.04 1.06 6.66 71.98 0.48 1.54 16 3 O -0.41 -13.75 10.34 -148.98 -1.54 -15.29 16 4 C 0.07 2.49 5.94 71.98 0.43 2.92 16 5 C -0.09 -3.79 4.90 30.60 0.15 -3.64 16 6 C -0.11 -5.27 3.86 29.85 0.12 -5.15 16 7 C 0.49 25.84 7.26 87.66 0.64 26.48 16 8 O -0.65 -37.42 15.34 -3.08 -0.05 -37.47 16 9 N -0.45 -22.58 2.37 -609.38 -1.44 -24.02 16 10 C -0.35 -16.88 6.79 84.04 0.57 -16.31 16 11 H 0.08 4.01 7.29 -2.91 -0.02 3.99 16 12 C 0.03 1.29 3.35 84.93 0.28 1.57 16 13 N -0.87 -44.54 11.58 21.66 0.25 -44.29 16 14 Si 0.95 36.96 29.63 68.60 2.03 38.99 16 15 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 16 H -0.29 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 18 C 0.12 5.32 3.29 45.72 0.15 5.47 16 19 C -0.12 -4.88 6.42 31.70 0.20 -4.68 16 20 C -0.11 -3.48 6.91 31.91 0.22 -3.26 16 21 C -0.11 -3.25 6.83 31.67 0.22 -3.03 16 22 C -0.12 -4.47 6.26 31.32 0.20 -4.27 16 23 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.05 2.15 8.03 -2.39 -0.02 2.13 16 32 H 0.10 4.74 5.46 -2.38 -0.01 4.72 16 33 H 0.09 3.73 7.75 -2.39 -0.02 3.71 16 34 H 0.27 13.06 8.32 -92.71 -0.77 12.29 16 35 H 0.05 2.57 6.95 -2.38 -0.02 2.55 16 36 H 0.06 3.01 7.02 -2.39 -0.02 2.99 16 37 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 38 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.06 2.29 6.95 -2.38 -0.02 2.27 16 Total: -1.00 -61.35 341.08 4.60 -56.75 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.96 Total: 29.81 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 4.39 Total: -4.49 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -1.19 Total: -68.31 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.59 Total: -52.76 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -61.35 4.60 -56.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084220229.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.965 kcal (2) G-P(sol) polarization free energy of solvation -61.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds