Wall clock time and date at job start Mon Mar 30 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.46898 * 2 1 4 4 C 1.34235 * 117.00059 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99426 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00289 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47230 * 172.27964 * 6 4 3 8 8 C 1.46900 * 110.99822 * 157.12791 * 7 6 4 9 9 C 1.53003 * 109.46867 * 213.74098 * 8 7 6 10 10 C 1.50703 * 115.54712 * 176.72356 * 9 8 7 11 11 H 1.07991 * 120.00462 * 35.39991 * 10 9 8 12 12 C 1.37882 * 119.99518 * 215.39431 * 10 9 8 13 13 N 1.31513 * 119.99686 * 39.58324 * 12 10 9 14 14 Si 1.86799 * 119.99782 * 219.57384 * 12 10 9 15 15 H 1.48493 * 109.47490 * 357.22799 * 14 12 10 16 16 H 1.48499 * 109.46964 * 117.22938 * 14 12 10 17 17 H 1.48504 * 109.47159 * 237.22539 * 14 12 10 18 18 C 1.52994 * 117.49873 * 31.05064 * 9 8 7 19 19 C 1.52998 * 117.50003 * 322.39016 * 9 8 7 20 20 C 1.46893 * 110.99911 * 281.07848 * 7 6 4 21 21 C 1.53003 * 109.47675 * 310.91321 * 20 7 6 22 22 C 1.53008 * 109.46911 * 70.90988 * 20 7 6 23 23 H 1.09002 * 109.47444 * 299.99898 * 1 2 3 24 24 H 1.09002 * 109.47600 * 59.99923 * 1 2 3 25 25 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47444 * 240.00102 * 2 1 3 27 27 H 1.09007 * 109.47127 * 120.00095 * 2 1 3 28 28 H 1.09003 * 109.47611 * 292.28030 * 6 4 3 29 29 H 1.09003 * 109.47132 * 52.27450 * 6 4 3 30 30 H 1.08998 * 109.47864 * 333.74182 * 8 7 6 31 31 H 1.09006 * 109.47116 * 93.74322 * 8 7 6 32 32 H 0.97005 * 119.99412 * 179.97438 * 13 12 10 33 33 H 1.08998 * 117.50097 * 0.02562 * 18 9 8 34 34 H 1.09002 * 117.49942 * 145.02015 * 18 9 8 35 35 H 1.08997 * 117.50491 * 214.97967 * 19 9 8 36 36 H 1.09001 * 117.49873 * 359.97438 * 19 9 8 37 37 H 1.09004 * 109.47389 * 190.90886 * 20 7 6 38 38 H 1.09004 * 109.47067 * 59.99368 * 21 20 7 39 39 H 1.09000 * 109.47605 * 179.97438 * 21 20 7 40 40 H 1.09005 * 109.46622 * 299.99993 * 21 20 7 41 41 H 1.08995 * 109.46923 * 50.79880 * 22 20 7 42 42 H 1.09000 * 109.46913 * 170.79223 * 22 20 7 43 43 H 1.08991 * 109.47248 * 290.79692 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0000 7 7 5.3760 2.8655 0.1868 8 6 6.0335 4.0724 -0.3317 9 6 7.4034 3.7012 -0.9032 10 6 8.1678 4.8306 -1.5445 11 1 8.1001 5.8284 -1.1370 12 6 8.9537 4.5898 -2.6516 13 7 8.5368 3.7650 -3.5871 14 14 10.6106 5.4355 -2.8225 15 1 10.8157 6.3586 -1.6775 16 1 11.6886 4.4143 -2.8343 17 1 10.6446 6.2058 -4.0916 18 6 7.5605 2.3064 -1.5121 19 6 8.2106 2.6315 -0.1649 20 6 5.7152 2.6467 1.5992 21 6 4.9472 3.6443 2.4687 22 6 5.3330 1.2205 2.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7000 3.4216 -0.9513 29 1 3.4781 3.5140 0.8123 30 1 5.4191 4.5120 -1.1174 31 1 6.1601 4.7929 0.4764 32 1 9.0895 3.5959 -4.3661 33 1 6.6878 1.6534 -1.5059 34 1 8.2170 2.2055 -2.3763 35 1 9.2945 2.7442 -0.1434 36 1 7.7659 2.1925 0.7282 37 1 6.7864 2.7897 1.7420 38 1 3.8760 3.5013 2.3259 39 1 5.1986 3.4816 3.5168 40 1 5.2194 4.6603 2.1828 41 1 5.7498 0.5165 1.2804 42 1 5.7299 1.0035 2.9922 43 1 4.2474 1.1257 2.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088256879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:56 Heat of formation + Delta-G solvation = -28.492899 kcal Electronic energy + Delta-G solvation = -22085.622239 eV Core-core repulsion = 18940.371536 eV Total energy + Delta-G solvation = -3145.250703 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.45090 -38.48082 -36.34164 -35.32607 -31.99804 -31.86806 -31.23537 -28.08325 -26.96552 -25.93165 -24.04314 -23.19126 -21.43936 -20.56622 -19.33662 -18.55572 -17.40451 -16.81124 -16.23887 -15.77541 -15.55445 -14.80062 -14.51117 -13.95142 -13.82124 -13.56231 -13.16465 -12.88542 -12.72668 -12.44982 -12.32229 -12.08351 -11.98576 -11.61816 -11.45368 -11.13697 -11.05629 -11.02919 -10.70391 -10.60819 -10.54452 -10.33960 -10.14778 -9.88657 -9.55017 -9.40508 -8.53319 -8.41381 -7.69921 -7.58466 -6.16352 -3.89218 2.56246 2.76042 3.30223 3.42843 3.48890 4.33909 4.51474 4.83040 4.84779 4.97251 4.98746 5.15664 5.18998 5.26502 5.47427 5.51959 5.59216 5.63650 5.65739 5.79091 5.82670 5.86576 5.96829 6.08728 6.12377 6.39440 6.43384 6.46587 6.58569 6.60149 6.85091 6.98379 7.13317 7.21427 7.50837 7.57881 7.67653 7.77277 7.90259 8.15245 8.22183 8.62119 9.03163 9.57470 10.86509 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028484 B = 0.004808 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.783660 B = 5822.006330 C = 6219.875901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.455 3.545 5 O -0.476 6.476 6 C 0.053 3.947 7 N -0.510 5.510 8 C 0.097 3.903 9 C 0.034 3.966 10 C -0.518 4.518 11 H 0.061 0.939 12 C 0.092 3.908 13 N -0.829 5.829 14 Si 0.855 3.145 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.287 1.287 18 C -0.159 4.159 19 C -0.227 4.227 20 C 0.066 3.934 21 C -0.190 4.190 22 C -0.135 4.135 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.035 0.965 32 H 0.260 0.740 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.041 0.959 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.544 -4.457 8.804 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.011 4.011 3 O -0.287 6.287 4 C 0.296 3.704 5 O -0.360 6.360 6 C -0.076 4.076 7 N -0.234 5.234 8 C -0.028 4.028 9 C 0.033 3.967 10 C -0.554 4.554 11 H 0.079 0.921 12 C -0.115 4.115 13 N -0.462 5.462 14 Si 0.681 3.319 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.214 1.214 18 C -0.196 4.196 19 C -0.265 4.265 20 C -0.042 4.042 21 C -0.248 4.248 22 C -0.192 4.192 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.095 0.905 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.130 0.870 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.060 0.940 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -13.138 -5.279 8.334 16.429 hybrid contribution 0.706 0.807 0.334 1.123 sum -12.432 -4.471 8.668 15.801 Atomic orbital electron populations 1.21791 0.93032 1.02657 1.03346 1.22908 0.94957 0.80871 1.02389 1.86492 1.25480 1.31837 1.84935 1.23847 0.79859 0.93456 0.73251 1.90676 1.59699 1.42890 1.42757 1.21817 0.91269 0.90004 1.04536 1.61819 1.03992 1.40579 1.17053 1.21845 0.96354 0.87602 0.97041 1.18816 0.89936 0.89694 0.98285 1.20200 1.28253 0.94287 1.12618 0.92051 1.24798 0.97869 0.94790 0.94082 1.70391 1.34550 1.35578 1.05688 0.87176 0.86781 0.80111 0.77860 1.19423 1.20737 1.21395 1.23199 1.01709 0.99461 0.95281 1.23404 0.97578 1.09519 0.95967 1.22074 1.01281 0.94639 0.86213 1.22538 1.00702 1.00796 1.00811 1.22051 1.00194 0.96859 1.00112 0.91698 0.91529 0.90540 0.91372 0.91630 0.87037 0.90295 0.91552 0.94683 0.93033 0.91337 0.87677 0.92095 0.91333 0.88008 0.92661 0.92266 0.92127 0.90038 0.94022 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.82 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.37 -5.05 10.22 -39.27 -0.40 -5.46 16 4 C 0.45 7.18 6.27 36.00 0.23 7.40 16 5 O -0.48 -8.74 12.41 -18.75 -0.23 -8.97 16 6 C 0.05 0.80 5.34 -4.98 -0.03 0.78 16 7 N -0.51 -9.17 2.59 -228.08 -0.59 -9.76 16 8 C 0.10 1.99 5.15 -3.82 -0.02 1.97 16 9 C 0.03 0.84 2.62 -155.66 -0.41 0.43 16 10 C -0.52 -14.15 8.87 -34.44 -0.31 -14.45 16 11 H 0.06 1.67 8.05 -52.49 -0.42 1.25 16 12 C 0.09 2.51 4.91 -17.82 -0.09 2.42 16 13 N -0.83 -23.34 10.93 55.43 0.61 -22.73 16 14 Si 0.85 20.64 29.68 -169.99 -5.04 15.60 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.16 -4.08 8.85 -26.70 -0.24 -4.32 16 19 C -0.23 -5.41 9.31 -26.70 -0.25 -5.65 16 20 C 0.07 1.07 1.97 -67.71 -0.13 0.93 16 21 C -0.19 -2.53 8.42 37.16 0.31 -2.22 16 22 C -0.13 -2.12 7.56 37.16 0.28 -1.84 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.79 8.13 -51.93 -0.42 0.36 16 27 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 28 H 0.11 1.63 7.42 -51.93 -0.39 1.25 16 29 H 0.08 1.03 5.13 -51.93 -0.27 0.77 16 30 H 0.07 1.36 7.31 -51.93 -0.38 0.98 16 31 H 0.03 0.68 6.40 -51.93 -0.33 0.35 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.07 1.75 7.47 -51.93 -0.39 1.36 16 34 H 0.11 2.97 5.49 -51.93 -0.29 2.68 16 35 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 36 H 0.07 1.49 4.71 -51.93 -0.24 1.24 16 37 H 0.10 1.82 5.32 -51.93 -0.28 1.54 16 38 H 0.05 0.68 5.92 -51.93 -0.31 0.37 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.82 6.78 -51.93 -0.35 0.47 16 41 H 0.08 1.50 6.88 -51.93 -0.36 1.14 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.04 0.60 5.76 -51.93 -0.30 0.30 16 LS Contribution 328.96 15.07 4.96 4.96 Total: -1.00 -29.58 328.96 -7.55 -37.13 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -6.81 Total: 3.67 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -0.03 Total: -14.43 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.01 Total: -32.50 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.63 Total: -14.43 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.04 Total: 15.60 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.58 -7.55 -37.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.640 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds