Wall clock time and date at job start Mon Mar 30 2020 01:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.46898 * 2 1 4 4 C 1.34235 * 117.00059 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99426 * 0.02562 * 4 3 2 6 6 C 1.50692 * 120.00289 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47230 * 172.27964 * 6 4 3 8 8 C 1.46900 * 110.99822 * 157.12791 * 7 6 4 9 9 C 1.53003 * 109.46867 * 213.74098 * 8 7 6 10 10 C 1.50703 * 115.54712 * 176.72356 * 9 8 7 11 11 H 1.07991 * 120.00462 * 35.39991 * 10 9 8 12 12 C 1.37882 * 119.99518 * 215.39431 * 10 9 8 13 13 N 1.31513 * 119.99686 * 39.58324 * 12 10 9 14 14 Si 1.86799 * 119.99782 * 219.57384 * 12 10 9 15 15 H 1.48493 * 109.47490 * 357.22799 * 14 12 10 16 16 H 1.48499 * 109.46964 * 117.22938 * 14 12 10 17 17 H 1.48504 * 109.47159 * 237.22539 * 14 12 10 18 18 C 1.52994 * 117.49873 * 31.05064 * 9 8 7 19 19 C 1.52998 * 117.50003 * 322.39016 * 9 8 7 20 20 C 1.46893 * 110.99911 * 281.07848 * 7 6 4 21 21 C 1.53003 * 109.47675 * 310.91321 * 20 7 6 22 22 C 1.53008 * 109.46911 * 70.90988 * 20 7 6 23 23 H 1.09002 * 109.47444 * 299.99898 * 1 2 3 24 24 H 1.09002 * 109.47600 * 59.99923 * 1 2 3 25 25 H 1.09001 * 109.47306 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47444 * 240.00102 * 2 1 3 27 27 H 1.09007 * 109.47127 * 120.00095 * 2 1 3 28 28 H 1.09003 * 109.47611 * 292.28030 * 6 4 3 29 29 H 1.09003 * 109.47132 * 52.27450 * 6 4 3 30 30 H 1.08998 * 109.47864 * 333.74182 * 8 7 6 31 31 H 1.09006 * 109.47116 * 93.74322 * 8 7 6 32 32 H 0.97005 * 119.99412 * 179.97438 * 13 12 10 33 33 H 1.08998 * 117.50097 * 0.02562 * 18 9 8 34 34 H 1.09002 * 117.49942 * 145.02015 * 18 9 8 35 35 H 1.08997 * 117.50491 * 214.97967 * 19 9 8 36 36 H 1.09001 * 117.49873 * 359.97438 * 19 9 8 37 37 H 1.09004 * 109.47389 * 190.90886 * 20 7 6 38 38 H 1.09004 * 109.47067 * 59.99368 * 21 20 7 39 39 H 1.09000 * 109.47605 * 179.97438 * 21 20 7 40 40 H 1.09005 * 109.46622 * 299.99993 * 21 20 7 41 41 H 1.08995 * 109.46923 * 50.79880 * 22 20 7 42 42 H 1.09000 * 109.46913 * 170.79223 * 22 20 7 43 43 H 1.08991 * 109.47248 * 290.79692 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9206 2.9374 0.0000 7 7 5.3760 2.8655 0.1868 8 6 6.0335 4.0724 -0.3317 9 6 7.4034 3.7012 -0.9032 10 6 8.1678 4.8306 -1.5445 11 1 8.1001 5.8284 -1.1370 12 6 8.9537 4.5898 -2.6516 13 7 8.5368 3.7650 -3.5871 14 14 10.6106 5.4355 -2.8225 15 1 10.8157 6.3586 -1.6775 16 1 11.6886 4.4143 -2.8343 17 1 10.6446 6.2058 -4.0916 18 6 7.5605 2.3064 -1.5121 19 6 8.2106 2.6315 -0.1649 20 6 5.7152 2.6467 1.5992 21 6 4.9472 3.6443 2.4687 22 6 5.3330 1.2205 2.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7000 3.4216 -0.9513 29 1 3.4781 3.5140 0.8123 30 1 5.4191 4.5120 -1.1174 31 1 6.1601 4.7929 0.4764 32 1 9.0895 3.5959 -4.3661 33 1 6.6878 1.6534 -1.5059 34 1 8.2170 2.2055 -2.3763 35 1 9.2945 2.7442 -0.1434 36 1 7.7659 2.1925 0.7282 37 1 6.7864 2.7897 1.7420 38 1 3.8760 3.5013 2.3259 39 1 5.1986 3.4816 3.5168 40 1 5.2194 4.6603 2.1828 41 1 5.7498 0.5165 1.2804 42 1 5.7299 1.0035 2.9922 43 1 4.2474 1.1257 2.0148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088256879.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:56 Heat of formation + Delta-G solvation = -44.053965 kcal Electronic energy + Delta-G solvation = -22086.297018 eV Core-core repulsion = 18940.371536 eV Total energy + Delta-G solvation = -3145.925481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.67853 -39.89130 -37.74728 -36.90364 -33.88165 -33.00514 -32.39789 -29.48470 -28.14234 -27.83646 -25.61835 -24.14385 -22.89182 -22.19741 -20.95780 -20.09860 -18.62156 -18.08306 -17.95066 -17.23408 -16.73458 -16.56956 -16.07266 -15.50711 -15.05605 -14.84641 -14.37501 -14.29442 -13.97606 -13.68992 -13.53396 -13.45588 -13.22567 -13.02455 -12.90595 -12.62614 -12.46271 -12.40368 -12.28394 -12.20548 -11.94438 -11.91543 -11.59110 -11.42926 -11.12080 -11.08117 -10.50574 -10.31572 -9.71938 -9.02099 -8.24859 -6.01680 1.33972 1.36909 1.45755 1.55952 1.66651 2.43720 2.88916 3.09723 3.81281 3.86255 4.02056 4.04380 4.10612 4.14797 4.29947 4.31279 4.38665 4.43323 4.57544 4.65225 4.72761 4.74073 4.86948 4.91225 4.94220 4.95111 4.99367 5.13125 5.17210 5.19697 5.28555 5.36190 5.47058 5.63702 5.64863 5.69740 5.86030 6.11316 6.14673 6.27377 6.55958 6.96395 6.97461 7.46182 8.78760 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.028484 B = 0.004808 C = 0.004501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.783660 B = 5822.006330 C = 6219.875901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.055 3.945 3 O -0.367 6.367 4 C 0.458 3.542 5 O -0.508 6.508 6 C 0.052 3.948 7 N -0.529 5.529 8 C 0.110 3.890 9 C 0.024 3.976 10 C -0.542 4.542 11 H 0.057 0.943 12 C 0.051 3.949 13 N -0.858 5.858 14 Si 0.916 3.084 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.282 1.282 18 C -0.167 4.167 19 C -0.211 4.211 20 C 0.065 3.935 21 C -0.181 4.181 22 C -0.123 4.123 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 -3.929 10.316 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.284 6.284 4 C 0.301 3.699 5 O -0.395 6.395 6 C -0.077 4.077 7 N -0.253 5.253 8 C -0.016 4.016 9 C 0.023 3.977 10 C -0.578 4.578 11 H 0.076 0.924 12 C -0.154 4.154 13 N -0.492 5.492 14 Si 0.741 3.259 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.204 4.204 19 C -0.248 4.248 20 C -0.043 4.043 21 C -0.240 4.240 22 C -0.181 4.181 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.117 0.883 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.385 -4.740 9.854 18.070 hybrid contribution 1.029 0.581 -0.143 1.190 sum -13.356 -4.160 9.711 17.029 Atomic orbital electron populations 1.21804 0.90279 1.04254 1.03715 1.23206 0.97071 0.79535 1.02091 1.86486 1.24135 1.33433 1.84349 1.23914 0.80367 0.93228 0.72401 1.90682 1.60545 1.43849 1.44397 1.21876 0.89676 0.90242 1.05870 1.61592 1.05803 1.39444 1.18485 1.21527 0.94206 0.88639 0.97250 1.19031 0.92102 0.88531 0.98055 1.20514 1.29596 0.94870 1.12819 0.92438 1.25451 1.00284 0.95764 0.93930 1.70447 1.35486 1.37130 1.06145 0.86212 0.82631 0.79068 0.77952 1.18980 1.20921 1.20822 1.22944 1.01434 1.00742 0.95306 1.23338 0.96694 1.08873 0.95923 1.22048 1.00650 0.95756 0.85843 1.22437 1.00910 0.99524 1.01084 1.21910 1.00269 0.95752 1.00162 0.91008 0.91430 0.88332 0.92214 0.91520 0.86645 0.87467 0.92035 0.93466 0.92838 0.91813 0.90375 0.93511 0.89059 0.89884 0.91362 0.90526 0.92278 0.93138 0.92077 0.93893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 10.29 71.98 0.74 -1.21 16 2 C 0.05 1.14 6.19 71.98 0.45 1.59 16 3 O -0.37 -9.46 10.22 -51.46 -0.53 -9.98 16 4 C 0.46 13.97 6.27 71.23 0.45 14.42 16 5 O -0.51 -18.57 12.41 21.95 0.27 -18.30 16 6 C 0.05 1.50 5.34 85.55 0.46 1.95 16 7 N -0.53 -18.50 2.59 -875.50 -2.27 -20.77 16 8 C 0.11 4.43 5.15 86.30 0.44 4.88 16 9 C 0.02 1.19 2.62 -52.93 -0.14 1.06 16 10 C -0.54 -29.79 8.87 25.60 0.23 -29.56 16 11 H 0.06 3.13 8.05 -2.92 -0.02 3.11 16 12 C 0.05 2.80 4.91 84.66 0.42 3.21 16 13 N -0.86 -49.20 10.93 21.45 0.23 -48.96 16 14 Si 0.92 42.79 29.68 68.60 2.04 44.83 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 C -0.17 -8.75 8.85 30.62 0.27 -8.48 16 19 C -0.21 -10.10 9.31 30.62 0.28 -9.81 16 20 C 0.06 1.98 1.97 44.92 0.09 2.07 16 21 C -0.18 -4.27 8.42 71.98 0.61 -3.66 16 22 C -0.12 -3.70 7.56 71.98 0.54 -3.16 16 23 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 28 H 0.12 3.24 7.42 -2.39 -0.02 3.22 16 29 H 0.11 2.48 5.13 -2.39 -0.01 2.47 16 30 H 0.06 2.49 7.31 -2.39 -0.02 2.48 16 31 H 0.05 1.76 6.40 -2.38 -0.02 1.75 16 32 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 33 H 0.06 3.35 7.47 -2.39 -0.02 3.33 16 34 H 0.08 4.56 5.49 -2.39 -0.01 4.55 16 35 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 36 H 0.09 3.94 4.71 -2.39 -0.01 3.93 16 37 H 0.08 2.85 5.32 -2.38 -0.01 2.84 16 38 H 0.07 1.43 5.92 -2.38 -0.01 1.42 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.43 6.78 -2.38 -0.02 1.41 16 41 H 0.05 1.84 6.88 -2.39 -0.02 1.82 16 42 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.04 1.23 5.76 -2.39 -0.01 1.22 16 Total: -1.00 -63.83 328.96 5.57 -58.26 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.99 Total: 21.63 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: 4.83 Total: -26.70 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -2.03 Total: -69.73 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.25 Total: -28.28 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.04 Total: 44.83 kcal Total: -63.83 5.57 -58.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088256879.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.203 kcal (2) G-P(sol) polarization free energy of solvation -63.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds