Wall clock time and date at job start Mon Mar 30 2020 00:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47392 * 2 1 4 4 C 1.50701 * 109.47172 * 120.00012 * 2 1 3 5 5 O 1.20825 * 120.00404 * 119.99656 * 4 2 1 6 6 O 1.34228 * 119.99684 * 300.00201 * 4 2 1 7 7 C 1.45201 * 116.99781 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47559 * 59.99800 * 7 6 4 9 9 C 1.53002 * 109.46887 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47241 * 299.99454 * 7 6 4 11 11 N 1.46905 * 109.47318 * 239.99584 * 2 1 3 12 12 C 1.46900 * 110.99403 * 71.69497 * 11 2 1 13 13 C 1.50704 * 109.46741 * 156.48751 * 12 11 2 14 14 H 1.07996 * 120.00290 * 355.19283 * 13 12 11 15 15 C 1.37880 * 120.00093 * 175.19064 * 13 12 11 16 16 N 1.31513 * 120.00374 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99929 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47027 * 89.99619 * 17 15 13 19 19 H 1.48494 * 109.47023 * 210.00274 * 17 15 13 20 20 H 1.48504 * 109.46746 * 330.00210 * 17 15 13 21 21 C 1.46901 * 110.99983 * 307.74514 * 11 2 1 22 22 C 1.53002 * 117.49576 * 142.29604 * 21 11 2 23 23 C 1.53000 * 117.49958 * 73.67317 * 21 11 2 24 24 H 1.09001 * 109.47155 * 67.08100 * 1 2 3 25 25 H 1.09001 * 109.47296 * 187.07192 * 1 2 3 26 26 H 1.08993 * 109.47759 * 307.07692 * 1 2 3 27 27 H 1.09002 * 109.47153 * 59.99894 * 8 7 6 28 28 H 1.09000 * 109.47373 * 179.97438 * 8 7 6 29 29 H 1.09002 * 109.47227 * 300.00185 * 8 7 6 30 30 H 1.08999 * 109.47144 * 60.00050 * 9 7 6 31 31 H 1.09000 * 109.47045 * 179.97438 * 9 7 6 32 32 H 1.09002 * 109.46996 * 299.99598 * 9 7 6 33 33 H 1.09007 * 109.47049 * 60.00440 * 10 7 6 34 34 H 1.08991 * 109.47406 * 180.02562 * 10 7 6 35 35 H 1.08999 * 109.47516 * 300.00395 * 10 7 6 36 36 H 1.08998 * 109.47287 * 276.48425 * 12 11 2 37 37 H 1.08998 * 109.47349 * 36.49035 * 12 11 2 38 38 H 0.96993 * 120.00508 * 180.02562 * 16 15 13 39 39 H 1.08994 * 115.54595 * 287.99558 * 21 11 2 40 40 H 1.08999 * 117.50091 * 359.97438 * 22 21 11 41 41 H 1.09000 * 117.49461 * 145.01979 * 22 21 11 42 42 H 1.09002 * 117.49092 * 214.97724 * 23 21 11 43 43 H 1.08997 * 117.49925 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.2276 -0.9857 3.5896 8 6 3.7569 -0.9841 3.5433 9 6 1.7564 -0.3184 4.8834 10 6 1.7174 -2.4274 3.5437 11 7 2.0197 -0.6926 -1.1994 12 6 1.7890 0.1151 -2.4046 13 6 2.7613 -0.2977 -3.4795 14 1 3.5287 -1.0261 -3.2628 15 6 2.6711 0.2544 -4.7397 16 7 3.5192 -0.1062 -5.6779 17 14 1.3441 1.5147 -5.1145 18 1 1.8594 2.8770 -4.8252 19 1 0.9646 1.4227 -6.5471 20 1 0.1533 1.2460 -4.2687 21 6 1.4037 -2.0199 -1.3293 22 6 1.0449 -2.4974 -2.7379 23 6 -0.0612 -2.0791 -1.7671 24 1 -0.3633 0.4002 -0.9465 25 1 -0.3634 -1.0198 0.1265 26 1 -0.3634 0.6195 0.8198 27 1 4.1203 0.0430 3.5760 28 1 4.1469 -1.5346 4.3994 29 1 4.0929 -1.4592 2.6216 30 1 0.6669 -0.3192 4.9167 31 1 2.1461 -0.8696 5.7392 32 1 2.1202 0.7086 4.9159 33 1 2.0535 -2.9025 2.6220 34 1 2.1071 -2.9781 4.3997 35 1 0.6279 -2.4285 3.5768 36 1 0.7696 -0.0414 -2.7572 37 1 1.9342 1.1693 -2.1688 38 1 3.4559 0.2825 -6.5643 39 1 1.7464 -2.7690 -0.6157 40 1 1.2656 -1.8265 -3.5682 41 1 1.1517 -3.5609 -2.9512 42 1 -0.6820 -2.8676 -1.3416 43 1 -0.5679 -1.1332 -1.9583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090815322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:12 Heat of formation + Delta-G solvation = -40.789795 kcal Electronic energy + Delta-G solvation = -22328.568556 eV Core-core repulsion = 19182.784620 eV Total energy + Delta-G solvation = -3145.783936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73472 -38.81715 -36.54687 -34.16488 -33.35224 -32.71874 -30.10438 -27.49470 -27.41662 -27.12749 -24.69393 -22.39611 -21.60686 -21.46601 -19.46506 -18.69664 -17.02177 -16.70191 -16.31167 -15.79511 -15.54603 -14.77781 -14.43919 -14.27060 -13.91168 -13.60092 -13.32546 -12.90342 -12.69761 -12.56075 -12.19512 -12.05470 -11.95878 -11.91565 -11.83081 -11.61010 -11.42363 -11.10165 -10.94302 -10.63812 -10.62976 -10.40574 -10.25685 -10.17274 -9.78913 -9.55819 -9.31477 -9.21136 -8.57703 -7.34219 -6.06723 -4.01757 2.60509 2.80580 3.24940 3.32116 3.33731 4.37780 4.42624 4.67370 4.70145 4.71725 4.83663 4.89979 5.20142 5.32388 5.37721 5.38251 5.46133 5.60263 5.64214 5.66620 5.71779 5.75524 5.77944 5.80202 5.89488 5.90027 6.00056 6.21570 6.22284 6.30190 6.34271 6.49780 6.65877 6.73004 6.80970 6.84026 7.31888 7.56361 7.78844 7.91198 8.24552 8.63094 9.08743 9.52976 11.06009 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029201 B = 0.005149 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.639033 B = 5436.776769 C = 5521.717907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.112 0.888 4 C 0.471 3.529 5 O -0.482 6.482 6 O -0.357 6.357 7 C 0.116 3.884 8 C -0.183 4.183 9 C -0.139 4.139 10 C -0.182 4.182 11 N -0.476 5.476 12 C 0.154 3.846 13 C -0.497 4.497 14 H 0.085 0.915 15 C 0.069 3.931 16 N -0.896 5.896 17 Si 0.867 3.133 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.267 1.267 21 C 0.035 3.965 22 C -0.172 4.172 23 C -0.241 4.241 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.007 0.993 37 H 0.022 0.978 38 H 0.264 0.736 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.904 -0.754 17.852 19.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.020 4.020 3 H 0.129 0.871 4 C 0.313 3.687 5 O -0.367 6.367 6 O -0.275 6.275 7 C 0.080 3.920 8 C -0.240 4.240 9 C -0.196 4.196 10 C -0.239 4.239 11 N -0.198 5.198 12 C 0.029 3.971 13 C -0.536 4.536 14 H 0.103 0.897 15 C -0.133 4.133 16 N -0.535 5.535 17 Si 0.694 3.306 18 H -0.201 1.201 19 H -0.211 1.211 20 H -0.192 1.192 21 C -0.074 4.074 22 C -0.208 4.208 23 C -0.280 4.280 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.024 0.976 37 H 0.040 0.960 38 H 0.074 0.926 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.090 -1.087 17.714 18.764 hybrid contribution -1.425 0.732 -0.317 1.633 sum -7.515 -0.355 17.397 18.955 Atomic orbital electron populations 1.22611 0.95188 1.03265 1.02824 1.21363 0.94303 0.98402 0.87893 0.87075 1.23666 0.77624 0.83292 0.84133 1.90530 1.34208 1.25301 1.86673 1.86549 1.70067 1.56003 1.14837 1.22081 0.94048 0.91619 0.84229 1.22488 0.94075 1.02872 1.04599 1.21833 1.02171 1.01339 0.94281 1.22476 1.01400 0.95507 1.04513 1.61829 1.54926 1.01757 1.01299 1.20407 0.96645 0.92387 0.87647 1.20964 1.14760 1.25035 0.92825 0.89671 1.24871 0.95826 0.96359 0.96206 1.69880 1.36627 1.43568 1.03392 0.86995 0.83039 0.82683 0.77889 1.20139 1.21108 1.19175 1.22568 0.92173 0.93072 0.99590 1.23676 0.99737 1.01864 0.95567 1.23652 0.93613 1.02695 1.08049 0.91065 0.91061 0.91939 0.92099 0.91472 0.89419 0.91679 0.90683 0.91576 0.89610 0.91438 0.92251 0.97558 0.96016 0.92601 0.86588 0.84222 0.90068 0.90163 0.88989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 7.45 37.15 0.28 -2.38 16 2 C 0.09 1.56 2.80 -68.86 -0.19 1.37 16 3 H 0.11 1.83 7.76 -51.93 -0.40 1.43 16 4 C 0.47 7.88 6.35 36.01 0.23 8.11 16 5 O -0.48 -8.99 10.18 -18.75 -0.19 -9.18 16 6 O -0.36 -5.15 9.81 -39.25 -0.39 -5.54 16 7 C 0.12 1.40 1.13 -90.62 -0.10 1.30 16 8 C -0.18 -2.22 8.37 37.16 0.31 -1.91 16 9 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 10 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 11 N -0.48 -9.98 4.31 -221.53 -0.96 -10.94 16 12 C 0.15 3.57 2.70 -4.97 -0.01 3.56 16 13 C -0.50 -13.64 7.18 -34.44 -0.25 -13.89 16 14 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 15 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 16 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 17 Si 0.87 20.65 27.57 -169.99 -4.69 15.97 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.04 6.41 56.52 0.36 -5.68 16 21 C 0.04 0.70 5.00 -67.71 -0.34 0.36 16 22 C -0.17 -3.48 9.23 -26.73 -0.25 -3.72 16 23 C -0.24 -4.20 7.20 -26.73 -0.19 -4.39 16 24 H 0.07 1.10 5.92 -51.93 -0.31 0.79 16 25 H 0.07 1.05 5.87 -51.93 -0.30 0.74 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.31 5.89 -51.93 -0.31 1.00 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.21 5.89 -51.93 -0.31 0.91 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.01 0.16 3.78 -51.93 -0.20 -0.04 16 37 H 0.02 0.50 7.30 -51.93 -0.38 0.12 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.12 2.31 6.79 -51.93 -0.35 1.95 16 40 H 0.14 3.32 4.85 -51.93 -0.25 3.06 16 41 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.62 4.95 -51.93 -0.26 1.36 16 LS Contribution 323.35 15.07 4.87 4.87 Total: -1.00 -29.85 323.35 -7.43 -37.29 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -6.89 Total: 6.05 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 0.03 Total: -12.48 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.18 Total: -36.97 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.58 Total: -14.72 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.69 Total: 15.97 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.85 -7.43 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090815322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.502 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds