Wall clock time and date at job start Mon Mar 30 2020 00:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47392 * 2 1 4 4 C 1.50701 * 109.47172 * 120.00012 * 2 1 3 5 5 O 1.20825 * 120.00404 * 119.99656 * 4 2 1 6 6 O 1.34228 * 119.99684 * 300.00201 * 4 2 1 7 7 C 1.45201 * 116.99781 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47559 * 59.99800 * 7 6 4 9 9 C 1.53002 * 109.46887 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47241 * 299.99454 * 7 6 4 11 11 N 1.46905 * 109.47318 * 239.99584 * 2 1 3 12 12 C 1.46900 * 110.99403 * 71.69497 * 11 2 1 13 13 C 1.50704 * 109.46741 * 156.48751 * 12 11 2 14 14 H 1.07996 * 120.00290 * 355.19283 * 13 12 11 15 15 C 1.37880 * 120.00093 * 175.19064 * 13 12 11 16 16 N 1.31513 * 120.00374 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99929 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47027 * 89.99619 * 17 15 13 19 19 H 1.48494 * 109.47023 * 210.00274 * 17 15 13 20 20 H 1.48504 * 109.46746 * 330.00210 * 17 15 13 21 21 C 1.46901 * 110.99983 * 307.74514 * 11 2 1 22 22 C 1.53002 * 117.49576 * 142.29604 * 21 11 2 23 23 C 1.53000 * 117.49958 * 73.67317 * 21 11 2 24 24 H 1.09001 * 109.47155 * 67.08100 * 1 2 3 25 25 H 1.09001 * 109.47296 * 187.07192 * 1 2 3 26 26 H 1.08993 * 109.47759 * 307.07692 * 1 2 3 27 27 H 1.09002 * 109.47153 * 59.99894 * 8 7 6 28 28 H 1.09000 * 109.47373 * 179.97438 * 8 7 6 29 29 H 1.09002 * 109.47227 * 300.00185 * 8 7 6 30 30 H 1.08999 * 109.47144 * 60.00050 * 9 7 6 31 31 H 1.09000 * 109.47045 * 179.97438 * 9 7 6 32 32 H 1.09002 * 109.46996 * 299.99598 * 9 7 6 33 33 H 1.09007 * 109.47049 * 60.00440 * 10 7 6 34 34 H 1.08991 * 109.47406 * 180.02562 * 10 7 6 35 35 H 1.08999 * 109.47516 * 300.00395 * 10 7 6 36 36 H 1.08998 * 109.47287 * 276.48425 * 12 11 2 37 37 H 1.08998 * 109.47349 * 36.49035 * 12 11 2 38 38 H 0.96993 * 120.00508 * 180.02562 * 16 15 13 39 39 H 1.08994 * 115.54595 * 287.99558 * 21 11 2 40 40 H 1.08999 * 117.50091 * 359.97438 * 22 21 11 41 41 H 1.09000 * 117.49461 * 145.01979 * 22 21 11 42 42 H 1.09002 * 117.49092 * 214.97724 * 23 21 11 43 43 H 1.08997 * 117.49925 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7269 -1.6928 1.1197 6 8 1.7080 -0.2518 2.4496 7 6 2.2276 -0.9857 3.5896 8 6 3.7569 -0.9841 3.5433 9 6 1.7564 -0.3184 4.8834 10 6 1.7174 -2.4274 3.5437 11 7 2.0197 -0.6926 -1.1994 12 6 1.7890 0.1151 -2.4046 13 6 2.7613 -0.2977 -3.4795 14 1 3.5287 -1.0261 -3.2628 15 6 2.6711 0.2544 -4.7397 16 7 3.5192 -0.1062 -5.6779 17 14 1.3441 1.5147 -5.1145 18 1 1.8594 2.8770 -4.8252 19 1 0.9646 1.4227 -6.5471 20 1 0.1533 1.2460 -4.2687 21 6 1.4037 -2.0199 -1.3293 22 6 1.0449 -2.4974 -2.7379 23 6 -0.0612 -2.0791 -1.7671 24 1 -0.3633 0.4002 -0.9465 25 1 -0.3634 -1.0198 0.1265 26 1 -0.3634 0.6195 0.8198 27 1 4.1203 0.0430 3.5760 28 1 4.1469 -1.5346 4.3994 29 1 4.0929 -1.4592 2.6216 30 1 0.6669 -0.3192 4.9167 31 1 2.1461 -0.8696 5.7392 32 1 2.1202 0.7086 4.9159 33 1 2.0535 -2.9025 2.6220 34 1 2.1071 -2.9781 4.3997 35 1 0.6279 -2.4285 3.5768 36 1 0.7696 -0.0414 -2.7572 37 1 1.9342 1.1693 -2.1688 38 1 3.4559 0.2825 -6.5643 39 1 1.7464 -2.7690 -0.6157 40 1 1.2656 -1.8265 -3.5682 41 1 1.1517 -3.5609 -2.9512 42 1 -0.6820 -2.8676 -1.3416 43 1 -0.5679 -1.1332 -1.9583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090815322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:12 Heat of formation + Delta-G solvation = -59.343289 kcal Electronic energy + Delta-G solvation = -22329.373096 eV Core-core repulsion = 19182.784620 eV Total energy + Delta-G solvation = -3146.588476 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.98028 -40.27082 -37.77798 -35.35091 -34.91337 -34.54266 -31.77003 -28.89373 -28.35183 -28.24826 -26.03464 -24.22285 -23.01721 -22.81170 -20.75824 -20.17599 -18.92213 -18.12706 -17.55647 -17.06406 -16.90471 -16.41150 -15.99510 -15.50005 -15.26593 -14.74526 -14.61985 -14.50963 -14.17841 -13.60421 -13.40548 -13.31281 -13.16212 -13.07575 -12.87698 -12.80995 -12.70557 -12.48904 -12.37527 -12.22932 -12.06662 -11.94334 -11.85040 -11.60988 -11.32520 -11.25569 -10.95035 -10.71239 -10.63110 -8.91906 -8.22760 -6.22768 1.32749 1.37419 1.38596 1.47907 1.64686 2.36912 2.93700 3.09098 3.18239 3.68925 3.80283 3.83104 3.99631 4.02110 4.07877 4.13420 4.21237 4.31996 4.55754 4.62188 4.63651 4.68514 4.78376 4.79584 4.84513 4.86846 4.91066 4.95580 4.99791 5.07435 5.14881 5.19708 5.27525 5.29548 5.35258 5.56345 5.60725 5.62607 5.97364 6.30887 6.61715 6.81863 6.99651 7.35778 8.94207 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029201 B = 0.005149 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.639033 B = 5436.776769 C = 5521.717907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 H 0.118 0.882 4 C 0.476 3.524 5 O -0.508 6.508 6 O -0.353 6.353 7 C 0.105 3.895 8 C -0.181 4.181 9 C -0.133 4.133 10 C -0.178 4.178 11 N -0.502 5.502 12 C 0.169 3.831 13 C -0.495 4.495 14 H 0.030 0.970 15 C 0.010 3.990 16 N -0.949 5.949 17 Si 0.939 3.061 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.242 1.242 21 C 0.029 3.971 22 C -0.197 4.197 23 C -0.201 4.201 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.016 0.984 37 H 0.030 0.970 38 H 0.265 0.735 39 H 0.111 0.889 40 H 0.103 0.897 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.640 0.409 20.388 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 H 0.135 0.865 4 C 0.318 3.682 5 O -0.395 6.395 6 O -0.271 6.271 7 C 0.070 3.930 8 C -0.239 4.239 9 C -0.190 4.190 10 C -0.235 4.235 11 N -0.225 5.225 12 C 0.043 3.957 13 C -0.534 4.534 14 H 0.048 0.952 15 C -0.187 4.187 16 N -0.590 5.590 17 Si 0.762 3.238 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.165 1.165 21 C -0.081 4.081 22 C -0.234 4.234 23 C -0.240 4.240 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.033 0.967 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.129 0.871 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -8.842 0.079 20.295 22.137 hybrid contribution -0.453 0.271 -0.997 1.128 sum -9.296 0.350 19.298 21.423 Atomic orbital electron populations 1.22524 0.92703 1.03926 1.03758 1.21457 0.96316 0.98191 0.86604 0.86460 1.23511 0.77108 0.82757 0.84814 1.90545 1.35313 1.26486 1.87179 1.86528 1.69826 1.56136 1.14587 1.22483 0.93891 0.92169 0.84480 1.22462 0.94567 1.02922 1.03906 1.21853 1.02728 1.01523 0.92900 1.22437 1.01888 0.95264 1.03956 1.61573 1.56817 1.02280 1.01835 1.20109 0.95444 0.92770 0.87417 1.21059 1.14206 1.23504 0.94585 0.95183 1.25759 0.98407 0.98753 0.95775 1.70055 1.39250 1.45672 1.04034 0.85846 0.80479 0.79626 0.77854 1.19153 1.21153 1.16516 1.22480 0.94301 0.92528 0.98753 1.23519 1.03107 1.01724 0.95017 1.23669 0.92320 1.03473 1.04557 0.91351 0.90946 0.89240 0.91969 0.89029 0.92805 0.90932 0.88301 0.91286 0.92617 0.89163 0.91479 0.96677 0.95222 0.92574 0.87090 0.87844 0.89173 0.87122 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.50 7.45 71.98 0.54 -3.96 16 2 C 0.08 2.78 2.80 44.17 0.12 2.90 16 3 H 0.12 3.69 7.76 -2.39 -0.02 3.67 16 4 C 0.48 15.51 6.35 71.24 0.45 15.97 16 5 O -0.51 -19.24 10.18 21.97 0.22 -19.01 16 6 O -0.35 -9.54 9.81 -51.40 -0.50 -10.04 16 7 C 0.11 2.30 1.13 -10.79 -0.01 2.29 16 8 C -0.18 -4.18 8.37 71.98 0.60 -3.57 16 9 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 10 C -0.18 -3.79 8.37 71.98 0.60 -3.19 16 11 N -0.50 -21.12 4.31 -854.78 -3.69 -24.81 16 12 C 0.17 7.75 2.70 85.56 0.23 7.99 16 13 C -0.50 -28.21 7.18 25.60 0.18 -28.02 16 14 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 15 C 0.01 0.57 5.47 84.66 0.46 1.04 16 16 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 17 Si 0.94 42.52 27.57 68.60 1.89 44.41 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.24 -9.88 6.41 99.48 0.64 -9.24 16 21 C 0.03 1.12 5.00 44.92 0.22 1.35 16 22 C -0.20 -8.05 9.23 30.60 0.28 -7.77 16 23 C -0.20 -6.57 7.20 30.60 0.22 -6.35 16 24 H 0.07 1.86 5.92 -2.39 -0.01 1.84 16 25 H 0.07 1.88 5.87 -2.39 -0.01 1.87 16 26 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.63 5.89 -2.39 -0.01 1.61 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.55 5.89 -2.38 -0.01 1.53 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.02 0.69 3.78 -2.39 -0.01 0.68 16 37 H 0.03 1.32 7.30 -2.39 -0.02 1.30 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.11 4.47 6.79 -2.39 -0.02 4.46 16 40 H 0.10 5.07 4.85 -2.39 -0.01 5.06 16 41 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 42 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 43 H 0.10 3.11 4.95 -2.39 -0.01 3.10 16 Total: -1.00 -68.47 323.35 3.69 -64.78 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 0.92 Total: 26.17 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.55 Total: -22.61 kcal Atomic # 7 Polarization: -80.30 SS G_CDS: -3.39 Total: -83.69 kcal Atomic # 8 Polarization: -28.77 SS G_CDS: -0.28 Total: -29.05 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.89 Total: 44.41 kcal Total: -68.47 3.69 -64.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090815322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.432 kcal (2) G-P(sol) polarization free energy of solvation -68.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds