Wall clock time and date at job start Mon Mar 30 2020 00:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46818 * 2 1 4 4 C 1.50701 * 109.47068 * 239.99824 * 2 1 3 5 5 O 1.20828 * 119.99774 * 239.99608 * 4 2 1 6 6 O 1.34222 * 120.00008 * 60.00172 * 4 2 1 7 7 C 1.45201 * 116.99661 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.47644 * 59.99958 * 7 6 4 9 9 C 1.53001 * 109.47013 * 179.97438 * 7 6 4 10 10 C 1.53003 * 109.47059 * 299.99251 * 7 6 4 11 11 N 1.46897 * 109.47026 * 119.99575 * 2 1 3 12 12 C 1.46905 * 111.00160 * 290.23376 * 11 2 1 13 13 C 1.50697 * 109.47052 * 201.36676 * 12 11 2 14 14 H 1.08001 * 120.00408 * 4.81127 * 13 12 11 15 15 C 1.37880 * 120.00066 * 184.81036 * 13 12 11 16 16 N 1.31518 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00251 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46724 * 89.99933 * 17 15 13 19 19 H 1.48493 * 109.47099 * 209.99734 * 17 15 13 20 20 H 1.48498 * 109.47170 * 330.00100 * 17 15 13 21 21 C 1.46901 * 111.00195 * 54.19170 * 11 2 1 22 22 C 1.52998 * 117.49821 * 287.23679 * 21 11 2 23 23 C 1.53002 * 60.00172 * 252.51027 * 22 21 11 24 24 H 1.09001 * 109.46658 * 171.82972 * 1 2 3 25 25 H 1.08997 * 109.46764 * 291.82546 * 1 2 3 26 26 H 1.08996 * 109.46731 * 51.83200 * 1 2 3 27 27 H 1.08996 * 109.47215 * 59.99451 * 8 7 6 28 28 H 1.09003 * 109.47513 * 180.02562 * 8 7 6 29 29 H 1.09001 * 109.46827 * 299.99797 * 8 7 6 30 30 H 1.09008 * 109.47075 * 59.99866 * 9 7 6 31 31 H 1.08999 * 109.47386 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.47159 * 300.00204 * 9 7 6 33 33 H 1.09001 * 109.46890 * 60.00523 * 10 7 6 34 34 H 1.08999 * 109.46979 * 180.02562 * 10 7 6 35 35 H 1.08999 * 109.47277 * 300.00266 * 10 7 6 36 36 H 1.09000 * 109.46862 * 321.37055 * 12 11 2 37 37 H 1.08999 * 109.46960 * 81.37020 * 12 11 2 38 38 H 0.97007 * 119.99281 * 180.02562 * 16 15 13 39 39 H 1.08997 * 115.56379 * 72.92185 * 21 11 2 40 40 H 1.08993 * 117.50596 * 145.01830 * 22 21 11 41 41 H 1.09004 * 117.50010 * 359.97438 * 22 21 11 42 42 H 1.08998 * 117.50000 * 107.48350 * 23 22 21 43 43 H 1.09000 * 117.49557 * 252.51591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7271 -1.6928 -1.1195 6 8 1.7082 -0.2519 -2.4495 7 6 2.2269 -0.9865 -3.5895 8 6 1.7156 -2.4278 -3.5431 9 6 1.7549 -0.3200 -4.8833 10 6 3.7562 -0.9860 -3.5436 11 7 2.0197 -0.6924 1.1995 12 6 1.7480 0.0949 2.4096 13 6 2.6794 -0.3402 3.5115 14 1 3.4520 -1.0674 3.3099 15 6 2.5452 0.1901 4.7772 16 7 1.6046 1.0760 5.0225 17 14 3.7001 -0.3486 6.1430 18 1 4.8888 0.5413 6.1657 19 1 2.9958 -0.2672 7.4477 20 1 4.1340 -1.7481 5.9011 21 6 1.4387 -2.0375 1.3050 22 6 -0.0364 -2.1410 1.6976 23 6 1.0513 -2.5323 2.7000 24 1 -0.3633 -1.0173 -0.1461 25 1 -0.3633 0.3821 0.9540 26 1 -0.3632 0.6351 -0.8079 27 1 0.6262 -2.4281 -3.5758 28 1 2.1054 -2.9794 -4.3986 29 1 2.0515 -2.9029 -2.6214 30 1 2.1188 0.7070 -4.9167 31 1 2.1446 -0.8712 -5.7392 32 1 0.6654 -0.3206 -4.9159 33 1 4.0921 -1.4611 -2.6218 34 1 4.1456 -1.5371 -4.3996 35 1 4.1204 0.0408 -3.5767 36 1 1.9047 1.1525 2.1978 37 1 0.7160 -0.0640 2.7223 38 1 1.5105 1.4494 5.9129 39 1 1.8244 -2.7731 0.5992 40 1 -0.6212 -2.9447 1.2503 41 1 -0.5757 -1.2111 1.8781 42 1 1.2276 -1.8597 3.5394 43 1 1.1822 -3.5934 2.9119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090815323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:14 Heat of formation + Delta-G solvation = -45.560649 kcal Electronic energy + Delta-G solvation = -22286.475268 eV Core-core repulsion = 19140.484452 eV Total energy + Delta-G solvation = -3145.990816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66928 -38.67311 -36.47745 -34.10415 -33.24209 -32.78123 -29.72149 -27.45505 -27.39216 -26.64844 -24.62829 -22.64484 -21.52770 -21.37957 -19.46653 -18.67011 -16.90881 -16.42397 -16.02559 -15.72217 -15.39153 -14.78981 -14.34690 -14.23114 -14.00642 -13.54610 -13.20518 -12.79043 -12.53357 -12.31458 -12.15111 -12.00207 -11.89666 -11.84930 -11.72347 -11.40489 -11.28006 -11.02664 -10.85100 -10.65064 -10.61102 -10.31242 -10.22503 -9.94766 -9.85372 -9.44869 -9.28676 -9.07040 -8.43870 -7.21694 -6.05203 -4.03269 2.66994 2.87982 3.32687 3.39057 3.44113 4.39782 4.58274 4.70776 4.74173 4.86610 4.90812 4.96906 5.27658 5.40690 5.46746 5.48624 5.52674 5.63125 5.68652 5.77149 5.81230 5.82779 5.85730 5.89429 5.93005 6.03240 6.13436 6.25408 6.32473 6.34971 6.49283 6.65792 6.79608 6.81782 7.10754 7.25389 7.46143 7.80485 8.02677 8.11812 8.28851 8.48123 9.04255 9.57158 11.04430 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.004903 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.620965 B = 5709.140322 C = 5850.002858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.093 3.907 3 H 0.110 0.890 4 C 0.471 3.529 5 O -0.486 6.486 6 O -0.356 6.356 7 C 0.116 3.884 8 C -0.182 4.182 9 C -0.139 4.139 10 C -0.183 4.183 11 N -0.487 5.487 12 C 0.186 3.814 13 C -0.495 4.495 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.898 5.898 17 Si 0.896 3.104 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.272 1.272 21 C 0.034 3.966 22 C -0.238 4.238 23 C -0.177 4.177 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.026 0.974 37 H 0.013 0.987 38 H 0.262 0.738 39 H 0.114 0.886 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.144 0.856 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.465 -3.305 -16.113 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.017 4.017 3 H 0.128 0.872 4 C 0.313 3.687 5 O -0.371 6.371 6 O -0.274 6.274 7 C 0.080 3.920 8 C -0.239 4.239 9 C -0.196 4.196 10 C -0.240 4.240 11 N -0.210 5.210 12 C 0.062 3.938 13 C -0.534 4.534 14 H 0.085 0.915 15 C -0.147 4.147 16 N -0.538 5.538 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.197 1.197 21 C -0.075 4.075 22 C -0.277 4.277 23 C -0.214 4.214 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.044 0.956 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.131 0.869 40 H 0.095 0.905 41 H 0.113 0.887 42 H 0.161 0.839 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.776 -3.542 -16.018 16.501 hybrid contribution -0.225 -0.212 0.759 0.820 sum -2.001 -3.755 -15.259 15.841 Atomic orbital electron populations 1.22608 0.95210 1.02932 1.03067 1.21332 0.94332 0.98347 0.87655 0.87191 1.23798 0.77470 0.83234 0.84157 1.90508 1.34478 1.25452 1.86697 1.86561 1.70084 1.55904 1.14856 1.22069 0.93999 0.91617 0.84338 1.22474 1.01423 0.95539 1.04446 1.21832 1.02192 1.01331 0.94270 1.22484 0.94152 1.02832 1.04517 1.62022 1.55602 1.01475 1.01874 1.19933 0.96563 0.92286 0.85011 1.21106 1.15377 1.23964 0.92911 0.91474 1.24966 0.95760 0.95275 0.98677 1.69956 1.32655 1.29296 1.21891 0.86511 0.80781 0.79246 0.81046 1.20684 1.21378 1.19678 1.22586 0.92336 0.93004 0.99618 1.23619 0.93801 1.02815 1.07458 1.23733 1.00407 1.01417 0.95840 0.91339 0.90615 0.92190 0.92231 0.91502 0.89643 0.91585 0.90739 0.91653 0.89460 0.91540 0.92116 0.95635 0.96972 0.92887 0.86859 0.90531 0.88663 0.83856 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 7.43 37.16 0.28 -2.59 16 2 C 0.09 1.70 2.81 -68.86 -0.19 1.51 16 3 H 0.11 1.95 7.82 -51.93 -0.41 1.55 16 4 C 0.47 8.14 6.33 36.01 0.23 8.37 16 5 O -0.49 -9.20 10.03 -18.75 -0.19 -9.39 16 6 O -0.36 -5.35 9.81 -39.24 -0.39 -5.73 16 7 C 0.12 1.43 1.13 -90.62 -0.10 1.33 16 8 C -0.18 -2.17 8.37 37.15 0.31 -1.86 16 9 C -0.14 -1.29 8.85 37.16 0.33 -0.97 16 10 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 11 N -0.49 -10.53 4.36 -221.52 -0.97 -11.50 16 12 C 0.19 4.60 3.59 -4.97 -0.02 4.58 16 13 C -0.49 -13.39 6.43 -34.44 -0.22 -13.61 16 14 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 15 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 16 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 17 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.03 0.69 5.01 -67.71 -0.34 0.35 16 22 C -0.24 -4.38 7.24 -26.73 -0.19 -4.57 16 23 C -0.18 -3.67 9.18 -26.73 -0.25 -3.91 16 24 H 0.07 1.08 5.86 -51.93 -0.30 0.78 16 25 H 0.08 1.30 5.83 -51.93 -0.30 1.00 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.23 5.89 -51.93 -0.31 0.93 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.31 5.89 -51.93 -0.31 1.01 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.67 7.71 -51.93 -0.40 0.27 16 37 H 0.01 0.32 5.07 -51.93 -0.26 0.06 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.11 2.31 6.67 -51.93 -0.35 1.97 16 40 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.10 1.82 4.93 -51.93 -0.26 1.56 16 42 H 0.14 3.48 4.76 -51.93 -0.25 3.23 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 326.51 15.07 4.92 4.92 Total: -1.00 -28.79 326.51 -7.77 -36.56 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.91 Total: 5.62 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.04 Total: -11.92 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.23 Total: -36.37 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.57 Total: -15.12 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.79 -7.77 -36.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090815323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.001 kcal (2) G-P(sol) polarization free energy of solvation -28.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds