Wall clock time and date at job start Mon Mar 30 2020 00:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46818 * 2 1 4 4 C 1.50701 * 109.47068 * 239.99824 * 2 1 3 5 5 O 1.20828 * 119.99774 * 239.99608 * 4 2 1 6 6 O 1.34222 * 120.00008 * 60.00172 * 4 2 1 7 7 C 1.45201 * 116.99661 * 180.02562 * 6 4 2 8 8 C 1.52994 * 109.47644 * 59.99958 * 7 6 4 9 9 C 1.53001 * 109.47013 * 179.97438 * 7 6 4 10 10 C 1.53003 * 109.47059 * 299.99251 * 7 6 4 11 11 N 1.46897 * 109.47026 * 119.99575 * 2 1 3 12 12 C 1.46905 * 111.00160 * 290.23376 * 11 2 1 13 13 C 1.50697 * 109.47052 * 201.36676 * 12 11 2 14 14 H 1.08001 * 120.00408 * 4.81127 * 13 12 11 15 15 C 1.37880 * 120.00066 * 184.81036 * 13 12 11 16 16 N 1.31518 * 119.99535 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00251 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.46724 * 89.99933 * 17 15 13 19 19 H 1.48493 * 109.47099 * 209.99734 * 17 15 13 20 20 H 1.48498 * 109.47170 * 330.00100 * 17 15 13 21 21 C 1.46901 * 111.00195 * 54.19170 * 11 2 1 22 22 C 1.52998 * 117.49821 * 287.23679 * 21 11 2 23 23 C 1.53002 * 60.00172 * 252.51027 * 22 21 11 24 24 H 1.09001 * 109.46658 * 171.82972 * 1 2 3 25 25 H 1.08997 * 109.46764 * 291.82546 * 1 2 3 26 26 H 1.08996 * 109.46731 * 51.83200 * 1 2 3 27 27 H 1.08996 * 109.47215 * 59.99451 * 8 7 6 28 28 H 1.09003 * 109.47513 * 180.02562 * 8 7 6 29 29 H 1.09001 * 109.46827 * 299.99797 * 8 7 6 30 30 H 1.09008 * 109.47075 * 59.99866 * 9 7 6 31 31 H 1.08999 * 109.47386 * 179.97438 * 9 7 6 32 32 H 1.09003 * 109.47159 * 300.00204 * 9 7 6 33 33 H 1.09001 * 109.46890 * 60.00523 * 10 7 6 34 34 H 1.08999 * 109.46979 * 180.02562 * 10 7 6 35 35 H 1.08999 * 109.47277 * 300.00266 * 10 7 6 36 36 H 1.09000 * 109.46862 * 321.37055 * 12 11 2 37 37 H 1.08999 * 109.46960 * 81.37020 * 12 11 2 38 38 H 0.97007 * 119.99281 * 180.02562 * 16 15 13 39 39 H 1.08997 * 115.56379 * 72.92185 * 21 11 2 40 40 H 1.08993 * 117.50596 * 145.01830 * 22 21 11 41 41 H 1.09004 * 117.50010 * 359.97438 * 22 21 11 42 42 H 1.08998 * 117.50000 * 107.48350 * 23 22 21 43 43 H 1.09000 * 117.49557 * 252.51591 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 8 2.7271 -1.6928 -1.1195 6 8 1.7082 -0.2519 -2.4495 7 6 2.2269 -0.9865 -3.5895 8 6 1.7156 -2.4278 -3.5431 9 6 1.7549 -0.3200 -4.8833 10 6 3.7562 -0.9860 -3.5436 11 7 2.0197 -0.6924 1.1995 12 6 1.7480 0.0949 2.4096 13 6 2.6794 -0.3402 3.5115 14 1 3.4520 -1.0674 3.3099 15 6 2.5452 0.1901 4.7772 16 7 1.6046 1.0760 5.0225 17 14 3.7001 -0.3486 6.1430 18 1 4.8888 0.5413 6.1657 19 1 2.9958 -0.2672 7.4477 20 1 4.1340 -1.7481 5.9011 21 6 1.4387 -2.0375 1.3050 22 6 -0.0364 -2.1410 1.6976 23 6 1.0513 -2.5323 2.7000 24 1 -0.3633 -1.0173 -0.1461 25 1 -0.3633 0.3821 0.9540 26 1 -0.3632 0.6351 -0.8079 27 1 0.6262 -2.4281 -3.5758 28 1 2.1054 -2.9794 -4.3986 29 1 2.0515 -2.9029 -2.6214 30 1 2.1188 0.7070 -4.9167 31 1 2.1446 -0.8712 -5.7392 32 1 0.6654 -0.3206 -4.9159 33 1 4.0921 -1.4611 -2.6218 34 1 4.1456 -1.5371 -4.3996 35 1 4.1204 0.0408 -3.5767 36 1 1.9047 1.1525 2.1978 37 1 0.7160 -0.0640 2.7223 38 1 1.5105 1.4494 5.9129 39 1 1.8244 -2.7731 0.5992 40 1 -0.6212 -2.9447 1.2503 41 1 -0.5757 -1.2111 1.8781 42 1 1.2276 -1.8597 3.5394 43 1 1.1822 -3.5934 2.9119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090815323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:14 Heat of formation + Delta-G solvation = -61.999611 kcal Electronic energy + Delta-G solvation = -22287.188115 eV Core-core repulsion = 19140.484452 eV Total energy + Delta-G solvation = -3146.703663 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.97272 -40.20156 -37.75903 -35.33092 -34.95084 -34.51926 -31.42388 -28.52582 -28.34121 -28.23649 -26.09714 -24.50687 -22.98419 -22.81651 -20.81035 -20.18248 -18.55441 -17.96604 -17.49170 -17.03165 -16.86943 -16.58310 -15.86051 -15.60512 -15.25552 -14.68107 -14.52467 -14.25193 -14.14647 -13.61677 -13.30791 -13.20073 -13.14358 -13.06018 -12.86910 -12.80612 -12.71330 -12.52099 -12.49894 -12.25572 -12.05333 -11.91721 -11.80243 -11.55842 -11.31939 -11.20120 -10.92043 -10.58747 -10.54350 -8.91723 -8.15631 -6.20152 1.32085 1.42500 1.43323 1.54120 1.66191 2.43137 2.98673 3.15720 3.28050 3.70418 3.81163 3.83818 4.00343 4.04412 4.11049 4.17570 4.26250 4.34819 4.57894 4.63225 4.65732 4.73049 4.79154 4.84846 4.87326 4.91319 4.95581 5.01591 5.09490 5.15153 5.18864 5.25946 5.30428 5.35357 5.35983 5.59902 5.69194 5.72407 6.08818 6.33774 6.53598 6.90225 6.99899 7.43874 8.93338 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.029984 B = 0.004903 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.620965 B = 5709.140322 C = 5850.002858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.086 3.914 3 H 0.108 0.892 4 C 0.479 3.521 5 O -0.505 6.505 6 O -0.355 6.355 7 C 0.104 3.896 8 C -0.178 4.178 9 C -0.134 4.134 10 C -0.181 4.181 11 N -0.503 5.503 12 C 0.206 3.794 13 C -0.502 4.502 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.956 3.044 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.269 1.269 21 C 0.030 3.970 22 C -0.209 4.209 23 C -0.193 4.193 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.003 0.997 37 H -0.001 1.001 38 H 0.264 0.736 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.107 0.893 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.839 -4.028 -17.953 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 H 0.126 0.874 4 C 0.322 3.678 5 O -0.393 6.393 6 O -0.272 6.272 7 C 0.069 3.931 8 C -0.235 4.235 9 C -0.191 4.191 10 C -0.238 4.238 11 N -0.227 5.227 12 C 0.081 3.919 13 C -0.540 4.540 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.569 5.569 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.207 1.207 20 H -0.194 1.194 21 C -0.079 4.079 22 C -0.248 4.248 23 C -0.230 4.230 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.104 0.896 27 H 0.083 0.917 28 H 0.110 0.890 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.080 0.920 36 H 0.021 0.979 37 H 0.017 0.983 38 H 0.073 0.927 39 H 0.133 0.867 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.125 0.875 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.155 -4.264 -17.884 18.511 hybrid contribution -0.095 0.005 1.218 1.222 sum -2.250 -4.258 -16.666 17.348 Atomic orbital electron populations 1.22475 0.93288 1.03646 1.03173 1.21384 0.95936 0.98047 0.87048 0.87384 1.23409 0.77067 0.82699 0.84664 1.90517 1.35292 1.26301 1.87153 1.86536 1.69901 1.56156 1.14650 1.22507 0.94059 0.92183 0.84392 1.22438 1.01811 0.95223 1.04064 1.21859 1.02662 1.01537 0.92996 1.22457 0.94367 1.02923 1.04021 1.61833 1.56935 1.01992 1.01891 1.19528 0.95190 0.91254 0.85918 1.21248 1.15275 1.23500 0.94025 0.92900 1.25662 0.97107 0.95278 1.00737 1.70049 1.34074 1.30335 1.22464 0.85570 0.78913 0.78868 0.78440 1.20295 1.20725 1.19355 1.22529 0.93887 0.92245 0.99237 1.23597 0.92843 1.03193 1.05185 1.23592 1.02700 1.01758 0.94984 0.90925 0.92202 0.89604 0.91650 0.89022 0.92479 0.91364 0.88157 0.91071 0.92612 0.88917 0.92042 0.97869 0.98342 0.92746 0.86697 0.87440 0.89425 0.87467 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.20 7.43 71.98 0.53 -4.67 16 2 C 0.09 3.12 2.81 44.17 0.12 3.24 16 3 H 0.11 3.92 7.82 -2.39 -0.02 3.90 16 4 C 0.48 16.34 6.33 71.24 0.45 16.79 16 5 O -0.51 -19.20 10.03 21.96 0.22 -18.98 16 6 O -0.35 -10.15 9.81 -51.34 -0.50 -10.65 16 7 C 0.10 2.35 1.13 -10.79 -0.01 2.34 16 8 C -0.18 -3.87 8.37 71.98 0.60 -3.27 16 9 C -0.13 -2.04 8.85 71.98 0.64 -1.40 16 10 C -0.18 -4.17 8.37 71.98 0.60 -3.57 16 11 N -0.50 -22.22 4.36 -854.77 -3.73 -25.95 16 12 C 0.21 10.54 3.59 85.56 0.31 10.84 16 13 C -0.50 -27.92 6.43 25.60 0.16 -27.76 16 14 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 15 C 0.01 0.58 5.46 84.65 0.46 1.04 16 16 N -0.93 -53.98 13.29 21.45 0.28 -53.69 16 17 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C 0.03 1.23 5.01 44.92 0.22 1.45 16 22 C -0.21 -7.49 7.24 30.59 0.22 -7.27 16 23 C -0.19 -8.03 9.18 30.60 0.28 -7.74 16 24 H 0.07 2.18 5.86 -2.39 -0.01 2.16 16 25 H 0.06 2.06 5.83 -2.39 -0.01 2.05 16 26 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.59 5.89 -2.39 -0.01 1.58 16 30 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 1.66 5.89 -2.39 -0.01 1.65 16 34 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.00 0.18 7.71 -2.39 -0.02 0.16 16 37 H 0.00 -0.06 5.07 -2.39 -0.01 -0.07 16 38 H 0.26 14.53 8.31 -92.70 -0.77 13.76 16 39 H 0.12 4.66 6.67 -2.39 -0.02 4.65 16 40 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.09 3.31 4.93 -2.38 -0.01 3.30 16 42 H 0.11 5.34 4.76 -2.39 -0.01 5.33 16 43 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 Total: -1.00 -63.10 326.51 3.89 -59.21 By element: Atomic # 1 Polarization: 22.71 SS G_CDS: 0.99 Total: 23.69 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 4.60 Total: -19.97 kcal Atomic # 7 Polarization: -76.20 SS G_CDS: -3.44 Total: -79.64 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.28 Total: -29.63 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -63.10 3.89 -59.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090815323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.788 kcal (2) G-P(sol) polarization free energy of solvation -63.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds