Wall clock time and date at job start Mon Mar 30 2020 01:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46931 * 2 1 4 4 C 1.34231 * 116.99725 * 180.02562 * 3 2 1 5 5 O 1.20818 * 120.00193 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99708 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47190 * 179.97438 * 6 4 3 8 8 C 1.52998 * 109.47052 * 179.97438 * 7 6 4 9 9 C 1.52998 * 109.47303 * 60.00292 * 8 7 6 10 10 N 1.46501 * 109.47202 * 59.99197 * 9 8 7 11 11 C 1.36934 * 120.00249 * 3.92412 * 10 9 8 12 12 H 1.08006 * 119.99654 * 39.50486 * 11 10 9 13 13 C 1.38808 * 120.00147 * 219.50642 * 11 10 9 14 14 N 1.31623 * 120.00202 * 210.20730 * 13 11 10 15 15 Si 1.86805 * 119.99740 * 30.20666 * 13 11 10 16 16 H 1.48503 * 109.46966 * 85.99816 * 15 13 11 17 17 H 1.48500 * 109.47050 * 205.99281 * 15 13 11 18 18 H 1.48494 * 109.47042 * 325.99718 * 15 13 11 19 19 C 1.46501 * 119.99941 * 183.91466 * 10 9 8 20 20 C 1.53001 * 109.47396 * 275.17821 * 19 10 9 21 21 C 1.53006 * 109.46924 * 299.99884 * 9 8 7 22 22 C 1.52996 * 109.47228 * 59.99296 * 6 4 3 23 23 H 1.08998 * 109.47217 * 60.00512 * 1 2 3 24 24 H 1.08996 * 109.47232 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47610 * 300.00312 * 1 2 3 26 26 H 1.08997 * 109.47185 * 239.99657 * 2 1 3 27 27 H 1.08998 * 109.47217 * 119.99488 * 2 1 3 28 28 H 1.09003 * 109.47008 * 299.99596 * 6 4 3 29 29 H 1.08997 * 109.47109 * 59.99821 * 7 6 4 30 30 H 1.09003 * 109.47076 * 299.99874 * 7 6 4 31 31 H 1.08994 * 109.47162 * 299.99426 * 8 7 6 32 32 H 1.09008 * 109.46900 * 180.02562 * 8 7 6 33 33 H 1.08998 * 109.47258 * 179.97438 * 9 8 7 34 34 H 0.97001 * 119.99842 * 180.02562 * 14 13 11 35 35 H 1.08997 * 109.47118 * 155.17700 * 19 10 9 36 36 H 1.08998 * 109.46928 * 35.17989 * 19 10 9 37 37 H 1.08995 * 109.47015 * 295.12425 * 20 19 10 38 38 H 1.09002 * 109.46987 * 55.12531 * 20 19 10 39 39 H 1.09007 * 109.46952 * 175.12282 * 20 19 10 40 40 H 1.08997 * 109.47205 * 179.97438 * 21 9 8 41 41 H 1.09001 * 109.46482 * 299.99934 * 21 9 8 42 42 H 1.08998 * 109.47329 * 300.00117 * 22 6 4 43 43 H 1.08995 * 109.47111 * 60.00494 * 22 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4485 2.8575 -0.0010 8 6 6.0332 4.2714 -0.0023 9 6 5.5617 5.0194 1.2462 10 7 6.0131 4.3052 2.4431 11 6 6.8083 3.1973 2.3201 12 1 7.5914 3.1745 1.5766 13 6 6.6081 2.1035 3.1510 14 7 7.6234 1.3343 3.4827 15 14 4.8975 1.7232 3.7983 16 1 4.1651 0.8966 2.8056 17 1 5.0070 0.9782 5.0783 18 1 4.1609 2.9923 4.0256 19 6 5.6139 4.7765 3.7715 20 6 6.5773 5.8709 4.2353 21 6 4.0337 5.0994 1.2462 22 6 3.4494 3.6849 1.2479 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5137 0.8900 28 1 3.5844 3.4693 -0.8912 29 1 5.7845 2.3249 -0.8907 30 1 5.7844 2.3258 0.8892 31 1 5.6974 4.8026 -0.8928 32 1 7.1218 4.2143 -0.0027 33 1 5.9786 6.0265 1.2456 34 1 7.4833 0.5698 4.0630 35 1 5.6423 3.9451 4.4757 36 1 4.6020 5.1790 3.7253 37 1 7.5732 5.4472 4.3648 38 1 6.6140 6.6633 3.4878 39 1 6.2310 6.2817 5.1837 40 1 3.6977 5.6320 2.1358 41 1 3.6979 5.6308 0.3556 42 1 2.3609 3.7419 1.2482 43 1 3.7856 3.1531 2.1379 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092930806.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:22 Heat of formation + Delta-G solvation = -90.226638 kcal Electronic energy + Delta-G solvation = -22932.421066 eV Core-core repulsion = 19784.493387 eV Total energy + Delta-G solvation = -3147.927679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.81344 -40.04379 -37.75450 -36.19336 -33.93630 -32.92585 -32.04079 -31.44261 -29.86115 -26.33487 -24.96892 -23.84840 -23.48005 -22.87527 -21.42541 -20.20241 -18.76709 -18.28130 -17.65559 -17.57401 -17.16709 -16.12738 -15.97911 -15.35501 -15.22304 -14.71336 -14.59667 -14.51202 -14.00926 -13.77589 -13.58340 -13.53768 -13.16478 -13.07435 -12.92190 -12.89230 -12.72939 -12.54969 -12.32513 -12.22455 -11.87382 -11.82848 -11.60898 -11.54174 -11.38046 -11.10386 -10.93348 -10.71816 -10.36934 -8.49653 -8.19297 -5.39957 1.15599 1.27504 1.38000 1.41367 1.68601 2.44519 3.07655 3.45254 3.65235 3.83934 3.89665 3.98105 4.02639 4.22183 4.31187 4.40518 4.47970 4.49014 4.61028 4.66536 4.77377 4.80848 4.82671 4.85429 4.86302 4.95231 5.02982 5.07251 5.15154 5.19894 5.32301 5.36523 5.41952 5.45543 5.50209 5.57004 5.67579 5.95469 6.00863 6.31910 6.72831 7.12968 7.77983 8.20705 9.01131 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.019517 B = 0.008073 C = 0.007167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.297507 B = 3467.367147 C = 3905.763291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.047 3.953 3 O -0.358 6.358 4 C 0.457 3.543 5 O -0.543 6.543 6 C -0.065 4.065 7 C -0.126 4.126 8 C -0.092 4.092 9 C 0.161 3.839 10 N -0.609 5.609 11 C -0.209 4.209 12 H 0.048 0.952 13 C -0.010 4.010 14 N -0.941 5.941 15 Si 0.892 3.108 16 H -0.310 1.310 17 H -0.322 1.322 18 H -0.221 1.221 19 C 0.133 3.867 20 C -0.153 4.153 21 C -0.122 4.122 22 C -0.113 4.113 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.136 0.864 29 H 0.042 0.958 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.254 0.746 35 H 0.025 0.975 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.748 7.533 -7.439 18.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 O -0.276 6.276 4 C 0.302 3.698 5 O -0.433 6.433 6 C -0.084 4.084 7 C -0.164 4.164 8 C -0.130 4.130 9 C 0.056 3.944 10 N -0.334 5.334 11 C -0.339 4.339 12 H 0.066 0.934 13 C -0.206 4.206 14 N -0.585 5.585 15 Si 0.723 3.277 16 H -0.239 1.239 17 H -0.252 1.252 18 H -0.144 1.144 19 C 0.008 3.992 20 C -0.213 4.213 21 C -0.160 4.160 22 C -0.151 4.151 23 H 0.098 0.902 24 H 0.119 0.881 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.154 0.846 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.513 7.125 -7.369 17.768 hybrid contribution -0.090 -1.680 0.716 1.828 sum -14.603 5.446 -6.653 16.946 Atomic orbital electron populations 1.21798 0.89251 1.04521 1.04057 1.23289 0.97911 0.79846 1.01663 1.86494 1.24025 1.33137 1.83897 1.24653 0.80515 0.93836 0.70843 1.90650 1.61353 1.44764 1.46495 1.21186 0.96659 0.87631 1.02885 1.21854 0.91594 0.99325 1.03580 1.21406 0.99671 0.94246 0.97631 1.20784 0.92853 0.94649 0.86113 1.44373 1.58507 1.29483 1.00991 1.18281 1.06998 0.91514 1.17144 0.93429 1.25919 0.98175 0.97037 0.99473 1.70081 1.31099 1.19644 1.37704 0.86891 0.86650 0.79105 0.75082 1.23913 1.25170 1.14436 1.21237 0.96633 0.95079 0.86207 1.22117 0.99583 0.98973 1.00584 1.21984 0.96271 0.94439 1.03352 1.21617 1.00538 0.97534 0.95379 0.90169 0.88098 0.91453 0.91142 0.93648 0.84615 0.93956 0.89681 0.89132 0.93435 0.92685 0.93677 0.95706 0.92035 0.95390 0.92164 0.91880 0.91069 0.88357 0.90045 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 10.29 71.98 0.74 -1.78 16 2 C 0.05 1.31 6.19 71.98 0.45 1.76 16 3 O -0.36 -11.86 10.12 -51.43 -0.52 -12.38 16 4 C 0.46 17.90 7.26 71.24 0.52 18.42 16 5 O -0.54 -26.02 15.73 21.99 0.35 -25.67 16 6 C -0.06 -2.19 2.63 -11.54 -0.03 -2.22 16 7 C -0.13 -5.04 4.10 30.59 0.13 -4.91 16 8 C -0.09 -3.10 4.93 30.59 0.15 -2.95 16 9 C 0.16 5.37 3.34 44.99 0.15 5.52 16 10 N -0.61 -26.09 1.47 -678.03 -1.00 -27.09 16 11 C -0.21 -11.19 6.08 84.03 0.51 -10.68 16 12 H 0.05 2.83 6.66 -2.91 -0.02 2.81 16 13 C -0.01 -0.58 4.65 84.86 0.39 -0.19 16 14 N -0.94 -60.38 13.97 21.65 0.30 -60.08 16 15 Si 0.89 46.96 22.96 68.60 1.58 48.53 16 16 H -0.31 -17.42 7.11 99.48 0.71 -16.71 16 17 H -0.32 -17.76 7.11 99.48 0.71 -17.06 16 18 H -0.22 -10.12 4.91 99.48 0.49 -9.63 16 19 C 0.13 5.31 4.41 86.38 0.38 5.69 16 20 C -0.15 -5.31 10.24 71.98 0.74 -4.57 16 21 C -0.12 -3.31 5.19 30.61 0.16 -3.15 16 22 C -0.11 -3.71 4.98 30.61 0.15 -3.56 16 23 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.07 1.90 8.13 -2.39 -0.02 1.89 16 27 H 0.04 1.45 8.13 -2.39 -0.02 1.43 16 28 H 0.14 3.41 8.14 -2.39 -0.02 3.39 16 29 H 0.04 1.68 8.10 -2.39 -0.02 1.67 16 30 H 0.09 4.35 3.95 -2.39 -0.01 4.34 16 31 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 32 H 0.05 1.81 7.01 -2.38 -0.02 1.79 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.25 15.94 8.31 -92.71 -0.77 15.17 16 35 H 0.02 1.13 4.54 -2.39 -0.01 1.12 16 36 H 0.06 2.12 6.24 -2.39 -0.01 2.10 16 37 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.07 1.83 6.60 -2.39 -0.02 1.81 16 41 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 2.28 8.11 -2.39 -0.02 2.26 16 43 H 0.04 1.72 3.02 -2.39 -0.01 1.71 16 Total: -1.00 -72.79 317.87 5.90 -66.88 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.77 Total: 12.42 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 4.43 Total: -2.62 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -0.70 Total: -87.17 kcal Atomic # 8 Polarization: -37.88 SS G_CDS: -0.17 Total: -38.05 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.58 Total: 48.53 kcal Total: -72.79 5.90 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092930806.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.343 kcal (2) G-P(sol) polarization free energy of solvation -72.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds