Wall clock time and date at job start Mon Mar 30 2020 01:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47225 * 239.99766 * 2 1 3 5 5 O 1.45202 * 109.46839 * 119.99639 * 2 1 3 6 6 C 1.34635 * 117.00045 * 60.00339 * 5 2 1 7 7 O 1.21511 * 119.99672 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00011 * 179.97438 * 6 5 2 9 9 C 1.46505 * 120.00124 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47088 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.35906 * 304.81746 * 10 9 8 12 12 C 1.52958 * 109.42851 * 64.63837 * 10 9 8 13 13 C 1.53234 * 109.41872 * 183.69184 * 12 10 9 14 14 C 1.51269 * 108.53255 * 305.37533 * 13 12 10 15 15 C 1.37874 * 120.85062 * 231.32452 * 14 13 12 16 16 N 1.31520 * 119.99667 * 348.88098 * 15 14 13 17 17 Si 1.86794 * 120.00308 * 168.88327 * 15 14 13 18 18 H 1.48504 * 109.46976 * 354.66105 * 17 15 14 19 19 H 1.48503 * 109.47296 * 114.65839 * 17 15 14 20 20 H 1.48498 * 109.47242 * 234.65983 * 17 15 14 21 21 C 1.51267 * 118.29982 * 51.35306 * 14 13 12 22 22 C 1.52961 * 109.41394 * 184.99763 * 10 9 8 23 23 H 1.09002 * 109.47370 * 300.00461 * 1 2 3 24 24 H 1.09001 * 109.47459 * 59.99996 * 1 2 3 25 25 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47482 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46673 * 299.99932 * 3 2 1 28 28 H 1.09002 * 109.47381 * 59.99545 * 3 2 1 29 29 H 1.08996 * 109.46871 * 300.00199 * 4 2 1 30 30 H 1.09001 * 109.46708 * 59.99778 * 4 2 1 31 31 H 1.09000 * 109.47204 * 179.97438 * 4 2 1 32 32 H 0.97001 * 120.00367 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47149 * 59.99791 * 9 8 6 34 34 H 1.09005 * 109.46295 * 299.99622 * 9 8 6 35 35 H 1.08993 * 109.47372 * 63.70745 * 12 10 9 36 36 H 1.09005 * 109.48770 * 303.68341 * 12 10 9 37 37 H 1.08997 * 109.62328 * 185.66079 * 13 12 10 38 38 H 1.08997 * 109.62116 * 65.08906 * 13 12 10 39 39 H 0.97005 * 119.99781 * 179.97438 * 16 15 14 40 40 H 1.09003 * 109.62690 * 188.93951 * 21 14 13 41 41 H 1.08996 * 109.78990 * 68.45352 * 21 14 13 42 42 H 1.09006 * 109.47988 * 56.31177 * 22 10 9 43 43 H 1.08997 * 109.48040 * 296.28739 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0679 -2.6656 2.4168 9 6 1.6748 -4.0671 2.5828 10 6 2.2747 -4.6149 3.8792 11 1 3.3544 -4.4662 3.8688 12 6 1.6711 -3.8725 5.0726 13 6 2.3386 -4.3565 6.3642 14 6 2.2101 -5.8620 6.4369 15 6 1.7082 -6.4751 7.5652 16 7 1.5392 -5.7820 8.6701 17 14 1.2681 -8.2900 7.5246 18 1 1.4269 -8.8070 6.1415 19 1 2.1679 -9.0381 8.4390 20 1 -0.1401 -8.4678 7.9609 21 6 2.6471 -6.6776 5.2402 22 6 1.9684 -6.1094 3.9894 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7489 -1.2491 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2494 32 1 2.6281 -2.2369 3.0827 33 1 2.0413 -4.6498 1.7377 34 1 0.5879 -4.1365 2.6280 35 1 0.6005 -4.0710 5.1203 36 1 1.8375 -2.8015 4.9567 37 1 1.8433 -3.9049 7.2237 38 1 3.3926 -4.0789 6.3578 39 1 1.1857 -6.2133 9.4639 40 1 2.3499 -7.7173 5.3776 41 1 3.7297 -6.6180 5.1284 42 1 2.3457 -6.6240 3.1056 43 1 0.8907 -6.2552 4.0626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000100006486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:21 Heat of formation + Delta-G solvation = -111.255245 kcal Electronic energy + Delta-G solvation = -21302.694788 eV Core-core repulsion = 18153.855240 eV Total energy + Delta-G solvation = -3148.839548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.66517 -38.03578 -36.72914 -34.53604 -33.87707 -32.18248 -29.65549 -28.98622 -27.54878 -27.48766 -25.10577 -22.31030 -21.74463 -20.82107 -20.03187 -19.18704 -17.97697 -16.58331 -16.26830 -15.99866 -15.04215 -14.59169 -14.53925 -14.44068 -13.70688 -13.55832 -13.28831 -12.84736 -12.64305 -12.61930 -12.28899 -12.05398 -12.01310 -11.99497 -11.81636 -11.45794 -11.40491 -11.20715 -10.91340 -10.72495 -10.43779 -10.34309 -10.03352 -9.98593 -9.85500 -9.35380 -8.94678 -8.84445 -8.58408 -8.38217 -6.10833 -3.99121 2.30858 2.98502 3.26386 3.36397 3.36979 4.28973 4.39038 4.59911 4.63806 4.78200 5.10769 5.30874 5.35788 5.39112 5.48113 5.53599 5.54568 5.63775 5.69449 5.73508 5.83314 6.03480 6.09508 6.17815 6.20397 6.30476 6.47129 6.53550 6.63874 6.69097 6.73636 6.92363 7.02513 7.11905 7.20795 7.43413 7.61666 7.66454 7.76776 7.83652 8.40463 8.53237 8.97862 9.55677 10.98852 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042640 B = 0.003600 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.498818 B = 7776.848214 C = 8058.891929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.646 3.354 7 O -0.575 6.575 8 N -0.703 5.703 9 C 0.138 3.862 10 C -0.085 4.085 11 H 0.066 0.934 12 C -0.105 4.105 13 C 0.011 3.989 14 C -0.487 4.487 15 C 0.075 3.925 16 N -0.888 5.888 17 Si 0.877 3.123 18 H -0.255 1.255 19 H -0.284 1.284 20 H -0.286 1.286 21 C -0.024 4.024 22 C -0.099 4.099 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.407 0.593 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.029 0.971 37 H 0.052 0.948 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.040 0.960 41 H 0.016 0.984 42 H 0.034 0.966 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.628 10.355 -15.572 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.240 4.240 5 O -0.282 6.282 6 C 0.399 3.601 7 O -0.465 6.465 8 N -0.361 5.361 9 C 0.016 3.984 10 C -0.104 4.104 11 H 0.085 0.915 12 C -0.143 4.143 13 C -0.026 4.026 14 C -0.506 4.506 15 C -0.128 4.128 16 N -0.525 5.525 17 Si 0.705 3.295 18 H -0.180 1.180 19 H -0.210 1.210 20 H -0.213 1.213 21 C -0.062 4.062 22 C -0.138 4.138 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.242 0.758 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.022 0.978 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.035 0.965 42 H 0.053 0.947 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.204 10.139 -15.836 18.805 hybrid contribution -0.119 -0.703 0.346 0.793 sum 0.084 9.436 -15.490 18.138 Atomic orbital electron populations 1.22516 0.94108 1.05168 1.02285 1.22006 0.94334 0.91453 0.82314 1.21855 1.02196 0.92719 1.02989 1.22512 1.01468 1.03619 0.96413 1.86305 1.71696 1.24032 1.46212 1.18147 0.79063 0.80312 0.82559 1.90869 1.41524 1.70502 1.43633 1.44952 1.54914 1.13215 1.23047 1.21665 1.00200 0.77626 0.98861 1.21282 0.99768 0.97057 0.92299 0.91521 1.21708 1.00149 0.95696 0.96724 1.19357 0.94855 0.95420 0.93019 1.20032 1.41204 0.91669 0.97671 1.24857 0.95315 0.97792 0.94788 1.69909 1.44829 1.36651 1.01123 0.86771 0.78152 0.86052 0.78478 1.18028 1.21018 1.21270 1.19940 0.95870 0.97043 0.93318 1.21536 1.00800 0.92945 0.98476 0.92175 0.91371 0.89277 0.91528 0.90330 0.91460 0.89300 0.91367 0.92267 0.75797 0.91911 0.91498 0.93081 0.95237 0.92949 0.97837 0.92730 0.94157 0.96542 0.94722 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16 2 C 0.14 1.53 1.13 -90.62 -0.10 1.42 16 3 C -0.14 -1.16 8.85 37.16 0.33 -0.83 16 4 C -0.18 -1.97 8.37 37.16 0.31 -1.65 16 5 O -0.37 -5.08 9.94 -40.31 -0.40 -5.48 16 6 C 0.65 10.02 8.06 54.05 0.44 10.46 16 7 O -0.58 -9.93 11.88 -19.28 -0.23 -10.16 16 8 N -0.70 -10.40 5.25 -65.28 -0.34 -10.75 16 9 C 0.14 2.18 5.06 -4.04 -0.02 2.16 16 10 C -0.09 -1.50 2.12 -90.67 -0.19 -1.70 16 11 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 12 C -0.10 -2.08 5.13 -26.63 -0.14 -2.22 16 13 C 0.01 0.26 5.93 -27.48 -0.16 0.10 16 14 C -0.49 -12.52 5.48 -98.92 -0.54 -13.06 16 15 C 0.07 2.03 5.44 -17.82 -0.10 1.93 16 16 N -0.89 -25.41 12.82 55.43 0.71 -24.70 16 17 Si 0.88 20.56 27.95 -169.99 -4.75 15.81 16 18 H -0.26 -5.68 5.58 56.52 0.32 -5.37 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.02 -0.55 5.65 -27.49 -0.16 -0.70 16 22 C -0.10 -1.90 5.21 -26.63 -0.14 -2.04 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.41 5.51 7.74 -40.82 -0.32 5.19 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.03 0.52 7.07 -51.93 -0.37 0.15 16 37 H 0.05 1.40 7.19 -51.93 -0.37 1.03 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.04 0.91 4.36 -51.93 -0.23 0.68 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 331.01 15.07 4.99 4.99 Total: -1.00 -28.82 331.01 -7.64 -36.46 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.46 Total: 1.69 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.16 Total: -7.86 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.37 Total: -35.44 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.63 Total: -15.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.75 Total: 15.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.82 -7.64 -36.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100006486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.794 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds