Wall clock time and date at job start Mon Mar 30 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47225 * 239.99766 * 2 1 3 5 5 O 1.45202 * 109.46839 * 119.99639 * 2 1 3 6 6 C 1.34635 * 117.00045 * 60.00339 * 5 2 1 7 7 O 1.21511 * 119.99672 * 359.97438 * 6 5 2 8 8 N 1.34770 * 120.00011 * 179.97438 * 6 5 2 9 9 C 1.46505 * 120.00124 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47088 * 180.02562 * 9 8 6 11 11 H 1.08997 * 109.35906 * 304.81746 * 10 9 8 12 12 C 1.52958 * 109.42851 * 64.63837 * 10 9 8 13 13 C 1.53234 * 109.41872 * 183.69184 * 12 10 9 14 14 C 1.51269 * 108.53255 * 305.37533 * 13 12 10 15 15 C 1.37874 * 120.85062 * 231.32452 * 14 13 12 16 16 N 1.31520 * 119.99667 * 348.88098 * 15 14 13 17 17 Si 1.86794 * 120.00308 * 168.88327 * 15 14 13 18 18 H 1.48504 * 109.46976 * 354.66105 * 17 15 14 19 19 H 1.48503 * 109.47296 * 114.65839 * 17 15 14 20 20 H 1.48498 * 109.47242 * 234.65983 * 17 15 14 21 21 C 1.51267 * 118.29982 * 51.35306 * 14 13 12 22 22 C 1.52961 * 109.41394 * 184.99763 * 10 9 8 23 23 H 1.09002 * 109.47370 * 300.00461 * 1 2 3 24 24 H 1.09001 * 109.47459 * 59.99996 * 1 2 3 25 25 H 1.08996 * 109.47358 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47482 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46673 * 299.99932 * 3 2 1 28 28 H 1.09002 * 109.47381 * 59.99545 * 3 2 1 29 29 H 1.08996 * 109.46871 * 300.00199 * 4 2 1 30 30 H 1.09001 * 109.46708 * 59.99778 * 4 2 1 31 31 H 1.09000 * 109.47204 * 179.97438 * 4 2 1 32 32 H 0.97001 * 120.00367 * 359.97438 * 8 6 5 33 33 H 1.08995 * 109.47149 * 59.99791 * 9 8 6 34 34 H 1.09005 * 109.46295 * 299.99622 * 9 8 6 35 35 H 1.08993 * 109.47372 * 63.70745 * 12 10 9 36 36 H 1.09005 * 109.48770 * 303.68341 * 12 10 9 37 37 H 1.08997 * 109.62328 * 185.66079 * 13 12 10 38 38 H 1.08997 * 109.62116 * 65.08906 * 13 12 10 39 39 H 0.97005 * 119.99781 * 179.97438 * 16 15 14 40 40 H 1.09003 * 109.62690 * 188.93951 * 21 14 13 41 41 H 1.08996 * 109.78990 * 68.45352 * 21 14 13 42 42 H 1.09006 * 109.47988 * 56.31177 * 22 10 9 43 43 H 1.08997 * 109.48040 * 296.28739 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5094 0.5041 8 7 2.0679 -2.6656 2.4168 9 6 1.6748 -4.0671 2.5828 10 6 2.2747 -4.6149 3.8792 11 1 3.3544 -4.4662 3.8688 12 6 1.6711 -3.8725 5.0726 13 6 2.3386 -4.3565 6.3642 14 6 2.2101 -5.8620 6.4369 15 6 1.7082 -6.4751 7.5652 16 7 1.5392 -5.7820 8.6701 17 14 1.2681 -8.2900 7.5246 18 1 1.4269 -8.8070 6.1415 19 1 2.1679 -9.0381 8.4390 20 1 -0.1401 -8.4678 7.9609 21 6 2.6471 -6.6776 5.2402 22 6 1.9684 -6.1094 3.9894 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 1.6767 -1.7489 -1.2491 30 1 1.6766 -0.2075 -2.1392 31 1 3.1300 -0.7209 -1.2494 32 1 2.6281 -2.2369 3.0827 33 1 2.0413 -4.6498 1.7377 34 1 0.5879 -4.1365 2.6280 35 1 0.6005 -4.0710 5.1203 36 1 1.8375 -2.8015 4.9567 37 1 1.8433 -3.9049 7.2237 38 1 3.3926 -4.0789 6.3578 39 1 1.1857 -6.2133 9.4639 40 1 2.3499 -7.7173 5.3776 41 1 3.7297 -6.6180 5.1284 42 1 2.3457 -6.6240 3.1056 43 1 0.8907 -6.2552 4.0626 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000100006486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:20 Heat of formation + Delta-G solvation = -128.559712 kcal Electronic energy + Delta-G solvation = -21303.445166 eV Core-core repulsion = 18153.855240 eV Total energy + Delta-G solvation = -3149.589926 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.76767 -39.41477 -38.02365 -35.89879 -34.96850 -33.91098 -31.38687 -30.68376 -28.32804 -28.26087 -26.64117 -23.62478 -23.48811 -22.34661 -21.25052 -20.63687 -19.12643 -18.04113 -17.58687 -17.22111 -16.41003 -16.14543 -15.71143 -15.56439 -15.12857 -14.90178 -14.63951 -14.41259 -14.17556 -13.88839 -13.46866 -13.31850 -13.05229 -12.96821 -12.85971 -12.82811 -12.67030 -12.49140 -12.46027 -12.25143 -12.07424 -11.79267 -11.45988 -11.35112 -11.19161 -11.07204 -10.63481 -10.52434 -10.35412 -10.11632 -8.14676 -6.05695 1.23973 1.39437 1.44746 1.52486 1.80401 2.44338 3.12129 3.24101 3.79340 3.83753 3.95391 3.98644 4.06055 4.20346 4.55137 4.64532 4.64828 4.69010 4.74696 4.79785 4.83421 4.85815 4.91085 4.91775 5.05167 5.10114 5.10981 5.20573 5.28294 5.31938 5.34736 5.39440 5.42934 5.53681 5.61786 5.67726 5.69853 5.84003 5.94300 6.41425 6.46239 7.01266 7.37969 7.51473 8.96571 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.042640 B = 0.003600 C = 0.003474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.498818 B = 7776.848214 C = 8058.891929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.122 3.878 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.645 3.355 7 O -0.595 6.595 8 N -0.700 5.700 9 C 0.152 3.848 10 C -0.074 4.074 11 H 0.074 0.926 12 C -0.094 4.094 13 C 0.006 3.994 14 C -0.496 4.496 15 C 0.016 3.984 16 N -0.934 5.934 17 Si 0.931 3.069 18 H -0.232 1.232 19 H -0.286 1.286 20 H -0.292 1.292 21 C -0.027 4.027 22 C -0.098 4.098 23 H 0.058 0.942 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.413 0.587 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.036 0.964 36 H 0.051 0.949 37 H 0.015 0.985 38 H 0.000 1.000 39 H 0.260 0.740 40 H 0.040 0.960 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.069 10.791 -18.158 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.086 3.914 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.486 6.486 8 N -0.360 5.360 9 C 0.029 3.971 10 C -0.093 4.093 11 H 0.093 0.907 12 C -0.132 4.132 13 C -0.031 4.031 14 C -0.515 4.515 15 C -0.182 4.182 16 N -0.574 5.574 17 Si 0.757 3.243 18 H -0.156 1.156 19 H -0.213 1.213 20 H -0.219 1.219 21 C -0.065 4.065 22 C -0.136 4.136 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.250 0.750 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.018 0.982 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.040 0.960 42 H 0.084 0.916 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.661 10.584 -18.446 21.277 hybrid contribution -0.218 -0.734 1.126 1.362 sum 0.443 9.850 -17.320 19.930 Atomic orbital electron populations 1.22480 0.94153 1.03604 1.03528 1.22443 0.94551 0.92822 0.81607 1.21886 1.02449 0.90595 1.04293 1.22465 1.01637 1.02198 0.97285 1.86321 1.71655 1.23059 1.47559 1.18232 0.78780 0.80838 0.82311 1.90870 1.42340 1.71094 1.44324 1.44858 1.54954 1.12944 1.23220 1.21401 0.99531 0.78271 0.97867 1.21111 1.00089 0.96008 0.92051 0.90729 1.21524 0.98826 0.97319 0.95516 1.19344 0.94580 0.95167 0.94015 1.20722 1.39483 0.92805 0.98474 1.25664 0.96098 1.01707 0.94699 1.70052 1.47101 1.38394 1.01898 0.85910 0.77263 0.81619 0.79468 1.15568 1.21260 1.21854 1.19963 0.96388 0.96667 0.93470 1.21471 1.00206 0.93931 0.97986 0.92249 0.88848 0.92124 0.91162 0.87765 0.91422 0.92056 0.88916 0.91915 0.75040 0.90856 0.92277 0.94503 0.93084 0.96581 0.98164 0.93099 0.94158 0.95995 0.91602 0.93363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 8.37 71.98 0.60 -3.09 16 2 C 0.12 2.49 1.13 -10.79 -0.01 2.48 16 3 C -0.14 -1.84 8.85 71.98 0.64 -1.20 16 4 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 5 O -0.37 -9.68 9.94 -55.45 -0.55 -10.23 16 6 C 0.65 19.14 8.06 129.79 1.05 20.18 16 7 O -0.59 -20.02 11.88 19.81 0.24 -19.78 16 8 N -0.70 -19.43 5.25 -590.86 -3.10 -22.53 16 9 C 0.15 4.43 5.06 86.38 0.44 4.87 16 10 C -0.07 -2.44 2.12 -10.82 -0.02 -2.46 16 11 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.09 -3.66 5.13 30.66 0.16 -3.50 16 13 C 0.01 0.31 5.93 30.11 0.18 0.49 16 14 C -0.50 -25.51 5.48 -16.17 -0.09 -25.60 16 15 C 0.02 0.87 5.44 84.65 0.46 1.33 16 16 N -0.93 -55.36 12.82 21.45 0.28 -55.08 16 17 Si 0.93 42.37 27.95 68.60 1.92 44.29 16 18 H -0.23 -9.57 5.58 99.48 0.56 -9.02 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 21 C -0.03 -1.18 5.65 30.11 0.17 -1.01 16 22 C -0.10 -3.49 5.21 30.66 0.16 -3.33 16 23 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.41 10.34 7.74 -92.71 -0.72 9.62 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.05 1.75 7.07 -2.38 -0.02 1.73 16 37 H 0.02 0.87 7.19 -2.39 -0.02 0.85 16 38 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.26 14.69 8.31 -92.70 -0.77 13.92 16 40 H 0.04 1.72 4.36 -2.39 -0.01 1.71 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -63.37 331.01 3.22 -60.15 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.12 Total: 16.93 kcal Atomic # 6 Polarization: -18.07 SS G_CDS: 4.33 Total: -13.74 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.83 Total: -77.62 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.32 Total: -30.01 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.92 Total: 44.29 kcal Total: -63.37 3.22 -60.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000100006486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.409 kcal (2) G-P(sol) polarization free energy of solvation -63.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds